Материалы:NC 009439

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009439            5072807 bp    DNA     circular BCT 25-JUN-2007
   DEFINITION  Pseudomonas mendocina ymp, complete genome.
   ACCESSION   NC_009439
   VERSION     NC_009439.1  GI:146305042
   KEYWORDS    .
   SOURCE      Pseudomonas mendocina ymp
     ORGANISM  Pseudomonas mendocina ymp
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Pseudomonadaceae; Pseudomonas.
   REFERENCE   1  (bases 1 to 5072807)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Detter,J.C.,
               Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Hersman,L., Dubois,J., Maurice,P. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Pseudomonas mendocina ymp
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5072807)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (08-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5072807)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Detter,J.C.,
               Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Hersman,L., Dubois,J., Maurice,P. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (17-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000680.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002766
               Source DNA and bacteria available from Larry Hersman
               (hersman@lanl.gov)
               Contacts: Larry Hersman (hersman@lanl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
237323	237399	-	77	146305042	Pmen_R0001	-	^{11 Arg tRNA}
711349	711435	-	87	146305042	Pmen_R0002	-	^{15 Leu tRNA}
711518	711604	-	87	146305042	Pmen_R0003	-	^{15 Leu tRNA}
863123	863198	+	76	146305042	Pmen_R0004	-	^{07 Asn tRNA}
863208	863284	+	77	146305042	Pmen_R0005	-	^{03 Pro tRNA}
863291	863366	+	76	146305042	Pmen_R0006	-	^{10 Lys tRNA}
1031264	1031557	+	294	146305042	Pmen_R0007	-	bacterial RNase P
1141980	1143527	+	1548	146305042	Pmen_R0008	-	16S ribosomal RNA
1143601	1143677	+	77	146305042	Pmen_R0009	-	^{14 Ile tRNA}
1143700	1143775	+	76	146305042	Pmen_R0010	-	^{02 Ala tRNA}
1144029	1146931	+	2903	146305042	Pmen_R0011	-	23S ribosomal RNA
1147079	1147198	+	120	146305042	Pmen_R0012	-	5S ribosomal RNA
1180764	1180840	+	77	146305042	Pmen_R0013	-	^{16 Met tRNA}
1193458	1193532	-	75	146305042	Pmen_R0014	-	^{05 Gln tRNA}
1193589	1193663	-	75	146305042	Pmen_R0015	-	^{05 Gln tRNA}
1340826	1341179	-	354	146305042	Pmen_R0016	-	tmRNA
1349585	1349657	-	73	146305042	Pmen_R0017	-	Xaa tRNA
1349656	1349728	-	73	146305042	Pmen_R0018	-	Xaa tRNA
1440964	1441039	+	76	146305042	Pmen_R0019	-	^{10 Lys tRNA}
1474256	1474331	+	76	146305042	Pmen_R0020	-	^{13 Val tRNA}
1474347	1474423	+	77	146305042	Pmen_R0021	-	^{06 Asp tRNA}
1515345	1515418	-	74	146305042	Pmen_R0022	-	^{01 Gly tRNA}
1827719	1827808	+	90	146305042	Pmen_R0023	-	^{08 Ser tRNA}
1887040	1887116	-	77	146305042	Pmen_R0024	-	^{16 Met tRNA}
1887232	1887308	-	77	146305042	Pmen_R0025	-	^{16 Met tRNA}
1919791	1919867	-	77	146305042	Pmen_R0026	-	^{03 Pro tRNA}
2072254	2072329	-	76	146305042	Pmen_R0027	-	^{07 Asn tRNA}
2107158	2107233	+	76	146305042	Pmen_R0028	-	^{04 Glu tRNA}
2107249	2107324	+	76	146305042	Pmen_R0029	-	^{01 Gly tRNA}
2107370	2107445	+	76	146305042	Pmen_R0030	-	^{04 Glu tRNA}
2107460	2107535	+	76	146305042	Pmen_R0031	-	^{01 Gly tRNA}
2175065	2175141	+	77	146305042	Pmen_R0032	-	^{13 Val tRNA}
2182775	2182851	+	77	146305042	Pmen_R0033	-	^{03 Pro tRNA}
2193257	2194804	+	1548	146305042	Pmen_R0034	-	16S ribosomal RNA
2194878	2194954	+	77	146305042	Pmen_R0035	-	^{14 Ile tRNA}
2194977	2195052	+	76	146305042	Pmen_R0036	-	^{02 Ala tRNA}
2195306	2198208	+	2903	146305042	Pmen_R0037	-	23S ribosomal RNA
2198356	2198475	+	120	146305042	Pmen_R0038	-	5S ribosomal RNA
2264335	2264411	+	77	146305042	Pmen_R0039	-	^{11 Arg tRNA}
2264450	2264525	+	76	146305042	Pmen_R0040	-	^{09 His tRNA}
2264581	2264665	+	85	146305042	Pmen_R0041	-	^{15 Leu tRNA}
2338212	2338301	+	90	146305042	Pmen_R0042	-	^{08 Ser tRNA}
2620607	2620693	-	87	146305042	Pmen_R0043	-	^{15 Leu tRNA}
2620814	2620887	-	74	146305042	Pmen_R0044	-	^{19 Cys tRNA}
2620926	2621001	-	76	146305042	Pmen_R0045	-	^{01 Gly tRNA}
2624297	2624384	-	88	146305042	Pmen_R0046	-	^{08 Ser tRNA}
2905983	2906100	-	118	146305042	Pmen_R0047	-	SRP RNA; RNA component of signal recognition particle
2998829	2998904	-	76	146305042	Pmen_R0048	-	^{04 Glu tRNA}
2998953	2999028	-	76	146305042	Pmen_R0049	-	^{02 Ala tRNA}
2999076	2999151	-	76	146305042	Pmen_R0050	-	^{04 Glu tRNA}
2999200	2999275	-	76	146305042	Pmen_R0051	-	^{02 Ala tRNA}
2999325	2999400	-	76	146305042	Pmen_R0052	-	^{04 Glu tRNA}
2999461	2999536	-	76	146305042	Pmen_R0053	-	^{02 Ala tRNA}
3182441	3182515	-	75	146305042	Pmen_R0054	-	^{11 Arg tRNA}
3209444	3209520	-	77	146305042	Pmen_R0055	-	^{11 Arg tRNA}
3209591	3209667	-	77	146305042	Pmen_R0056	-	^{11 Arg tRNA}
3209712	3209788	-	77	146305042	Pmen_R0057	-	^{11 Arg tRNA}
3209860	3209950	-	91	146305042	Pmen_R0058	-	^{08 Ser tRNA}
3276658	3276734	-	77	146305042	Pmen_R0059	-	^{06 Asp tRNA}
3276835	3276911	-	77	146305042	Pmen_R0060	-	^{06 Asp tRNA}
3276944	3277019	-	76	146305042	Pmen_R0061	-	^{13 Val tRNA}
3523269	3523344	-	76	146305042	Pmen_R0062	-	^{12 Thr tRNA}
3882267	3882351	+	85	146305042	Pmen_R0063	-	^{15 Leu tRNA}
3984674	3984750	-	77	146305042	Pmen_R0064	-	^{16 Met tRNA}
3984848	3984933	-	86	146305042	Pmen_R0065	-	^{15 Leu tRNA}
4303533	4303608	-	76	146305042	Pmen_R0066	-	^{20 Trp tRNA}
4304940	4305015	-	76	146305042	Pmen_R0067	-	^{12 Thr tRNA}
4305042	4305115	-	74	146305042	Pmen_R0068	-	^{01 Gly tRNA}
4305140	4305224	-	85	146305042	Pmen_R0069	-	^{18 Tyr tRNA}
4308086	4308200	-	115	146305042	Pmen_R0070	-	5S ribosomal RNA
4308352	4311256	-	2905	146305042	Pmen_R0071	-	23S ribosomal RNA
4311508	4311583	-	76	146305042	Pmen_R0072	-	^{02 Ala tRNA}
4311606	4311682	-	77	146305042	Pmen_R0073	-	^{14 Ile tRNA}
4311767	4313303	-	1537	146305042	Pmen_R0074	-	16S ribosomal RNA
4410691	4410767	+	77	146305042	Pmen_R0075	-	^{16 Met tRNA}
4664813	4664888	+	76	146305042	Pmen_R0076	-	^{17 Phe tRNA}
4677750	4677825	+	76	146305042	Pmen_R0077	-	^{12 Thr tRNA}
4849314	4849428	-	115	146305042	Pmen_R0078	-	5S ribosomal RNA
4849579	4852483	-	2905	146305042	Pmen_R0079	-	23S ribosomal RNA
4852735	4852810	-	76	146305042	Pmen_R0080	-	^{02 Ala tRNA}
4852833	4852909	-	77	146305042	Pmen_R0081	-	^{14 Ile tRNA}
4852994	4854530	-	1537	146305042	Pmen_R0082	-	16S ribosomal RNA