Материалы:NC 009831

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009831            5517674 bp    DNA     circular BCT 20-SEP-2007
   DEFINITION  Shewanella sediminis HAW-EB3, complete genome.
   ACCESSION   NC_009831
   VERSION     NC_009831.1  GI:157373141
   KEYWORDS    .
   SOURCE      Shewanella sediminis HAW-EB3
     ORGANISM  Shewanella sediminis HAW-EB3
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 5517674)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Zhao,J.-S. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella sediminis HAW-EB3
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5517674)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (19-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5517674)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (29-AUG-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000821.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002758
               Source DNA and bacteria available from Jian-Shen Zhao
               (Jian-Shen.Zhao@cnrc-nrc.gc.ca)
               Contacts: Jian-Shen Zhao (Jian-Shen.Zhao@cnrc-nrc.gc.ca)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
51967	53501	+	1535	157373141	Ssed_R0001	-	16S ribosomal RNA
53841	56736	+	2896	157373141	Ssed_R0002	-	23S ribosomal RNA
56874	56989	+	116	157373141	Ssed_R0003	-	5S ribosomal RNA
318985	320519	+	1535	157373141	Ssed_R0004	-	16S ribosomal RNA
320850	323745	+	2896	157373141	Ssed_R0005	-	23S ribosomal RNA
323884	323999	+	116	157373141	Ssed_R0006	-	5S ribosomal RNA
325699	327233	+	1535	157373141	Ssed_R0007	-	16S ribosomal RNA
327564	330459	+	2896	157373141	Ssed_R0008	-	23S ribosomal RNA
330598	330713	+	116	157373141	Ssed_R0009	-	5S ribosomal RNA
491508	493042	+	1535	157373141	Ssed_R0010	-	16S ribosomal RNA
493117	493193	+	77	157373141	Ssed_R0011	-	^{14 Ile tRNA}
493264	493339	+	76	157373141	Ssed_R0012	-	^{02 Ala tRNA}
493682	496577	+	2896	157373141	Ssed_R0013	-	23S ribosomal RNA
496718	496833	+	116	157373141	Ssed_R0014	-	5S ribosomal RNA
498850	500384	+	1535	157373141	Ssed_R0015	-	16S ribosomal RNA
500734	503629	+	2896	157373141	Ssed_R0016	-	23S ribosomal RNA
503768	503883	+	116	157373141	Ssed_R0017	-	5S ribosomal RNA
503973	504048	+	76	157373141	Ssed_R0018	-	^{12 Thr tRNA}
504068	504183	+	116	157373141	Ssed_R0019	-	5S ribosomal RNA
505889	507423	+	1535	157373141	Ssed_R0020	-	16S ribosomal RNA
507763	510658	+	2896	157373141	Ssed_R0021	-	23S ribosomal RNA
510797	510912	+	116	157373141	Ssed_R0022	-	5S ribosomal RNA
628361	628451	+	91	157373141	Ssed_R0023	-	^{08 Ser tRNA}
937820	937895	+	76	157373141	Ssed_R0024	-	^{01 Gly tRNA}
937947	938022	+	76	157373141	Ssed_R0025	-	^{01 Gly tRNA}
938037	938112	+	76	157373141	Ssed_R0026	-	^{01 Gly tRNA}
938127	938202	+	76	157373141	Ssed_R0027	-	^{01 Gly tRNA}
1272823	1272899	-	77	157373141	Ssed_R0028	-	^{16 Met tRNA}
1449742	1449817	-	76	157373141	Ssed_R0029	-	^{12 Thr tRNA}
1449858	1449933	-	76	157373141	Ssed_R0030	-	^{17 Phe tRNA}
1450602	1450677	-	76	157373141	Ssed_R0031	-	^{12 Thr tRNA}
1450718	1450793	-	76	157373141	Ssed_R0032	-	^{17 Phe tRNA}
1569189	1569280	+	92	157373141	Ssed_R0033	-	^{08 Ser tRNA}
1569303	1569379	+	77	157373141	Ssed_R0034	-	^{11 Arg tRNA}
1569415	1569491	+	77	157373141	Ssed_R0035	-	^{11 Arg tRNA}
1569526	1569602	+	77	157373141	Ssed_R0036	-	^{11 Arg tRNA}
1569678	1569754	+	77	157373141	Ssed_R0037	-	^{11 Arg tRNA}
1569777	1569868	+	92	157373141	Ssed_R0038	-	^{08 Ser tRNA}
1569993	1570069	+	77	157373141	Ssed_R0039	-	^{11 Arg tRNA}
1570115	1570191	+	77	157373141	Ssed_R0040	-	^{11 Arg tRNA}
1570281	1570357	+	77	157373141	Ssed_R0041	-	^{11 Arg tRNA}
1570404	1570480	+	77	157373141	Ssed_R0042	-	^{11 Arg tRNA}
1570569	1570645	+	77	157373141	Ssed_R0043	-	^{11 Arg tRNA}
1570667	1570758	+	92	157373141	Ssed_R0044	-	^{08 Ser tRNA}
1669017	1669370	-	354	157373141	Ssed_R0045	-	tmRNA
1838054	1838130	+	77	157373141	Ssed_R0046	-	^{03 Pro tRNA}
1838221	1838297	+	77	157373141	Ssed_R0047	-	^{11 Arg tRNA}
1838306	1838381	+	76	157373141	Ssed_R0048	-	^{09 His tRNA}
1863525	1863639	+	115	157373141	Ssed_R0049	-	SRP RNA; RNA component of signal recognition particle
2146027	2147561	+	1535	157373141	Ssed_R0050	-	16S ribosomal RNA
2147817	2147893	+	77	157373141	Ssed_R0051	-	^{14 Ile tRNA}
2148047	2148122	+	76	157373141	Ssed_R0052	-	^{02 Ala tRNA}
2148648	2151543	+	2896	157373141	Ssed_R0053	-	23S ribosomal RNA
2151655	2151770	+	116	157373141	Ssed_R0054	-	5S ribosomal RNA
2179302	2179378	-	77	157373141	Ssed_R0055	-	^{03 Pro tRNA}
2236549	2236624	+	76	157373141	Ssed_R0056	-	^{10 Lys tRNA}
2236695	2236770	+	76	157373141	Ssed_R0057	-	^{10 Lys tRNA}
2236886	2236961	+	76	157373141	Ssed_R0058	-	^{10 Lys tRNA}
2237027	2237102	+	76	157373141	Ssed_R0059	-	^{10 Lys tRNA}
2237218	2237293	+	76	157373141	Ssed_R0060	-	^{10 Lys tRNA}
2237354	2237429	+	76	157373141	Ssed_R0061	-	^{10 Lys tRNA}
2237624	2237699	+	76	157373141	Ssed_R0062	-	^{10 Lys tRNA}
2237751	2237826	+	76	157373141	Ssed_R0063	-	^{10 Lys tRNA}
2238021	2238096	+	76	157373141	Ssed_R0064	-	^{10 Lys tRNA}
2238149	2238224	+	76	157373141	Ssed_R0065	-	^{10 Lys tRNA}
2411914	2411990	+	77	157373141	Ssed_R0066	-	^{06 Asp tRNA}
2412060	2412136	+	77	157373141	Ssed_R0067	-	^{06 Asp tRNA}
2477261	2477336	-	76	157373141	Ssed_R0068	-	^{07 Asn tRNA}
2477372	2477447	-	76	157373141	Ssed_R0069	-	^{07 Asn tRNA}
2477476	2477551	-	76	157373141	Ssed_R0070	-	^{07 Asn tRNA}
2477576	2477651	-	76	157373141	Ssed_R0071	-	^{07 Asn tRNA}
2477689	2477764	-	76	157373141	Ssed_R0072	-	^{07 Asn tRNA}
2477805	2477880	-	76	157373141	Ssed_R0073	-	^{07 Asn tRNA}
2477933	2478008	-	76	157373141	Ssed_R0074	-	^{07 Asn tRNA}
2485108	2485192	-	85	157373141	Ssed_R0075	-	^{18 Tyr tRNA}
2485260	2485344	-	85	157373141	Ssed_R0076	-	^{18 Tyr tRNA}
2485415	2485499	-	85	157373141	Ssed_R0077	-	^{18 Tyr tRNA}
2485560	2485644	-	85	157373141	Ssed_R0078	-	^{18 Tyr tRNA}
2563331	2563407	-	77	157373141	Ssed_R0079	-	^{13 Val tRNA}
2563410	2563486	-	77	157373141	Ssed_R0080	-	^{16 Met tRNA}
2563681	2563757	-	77	157373141	Ssed_R0081	-	^{13 Val tRNA}
2563902	2563978	-	77	157373141	Ssed_R0082	-	^{16 Met tRNA}
2564024	2564100	-	77	157373141	Ssed_R0083	-	^{16 Met tRNA}
2564150	2564226	-	77	157373141	Ssed_R0084	-	^{13 Val tRNA}
2585839	2585929	+	91	157373141	Ssed_R0085	-	^{08 Ser tRNA}
2683689	2683774	-	86	157373141	Ssed_R0086	-	^{15 Leu tRNA}
2683861	2683934	-	74	157373141	Ssed_R0087	-	^{19 Cys tRNA}
2684202	2684277	-	76	157373141	Ssed_R0088	-	^{01 Gly tRNA}
2684729	2684814	-	86	157373141	Ssed_R0089	-	^{15 Leu tRNA}
2684901	2684974	-	74	157373141	Ssed_R0090	-	^{19 Cys tRNA}
2685016	2685091	-	76	157373141	Ssed_R0091	-	^{01 Gly tRNA}
2814787	2814876	+	90	157373141	Ssed_R0092	-	^{08 Ser tRNA}
2977712	2977797	-	86	157373141	Ssed_R0093	-	^{15 Leu tRNA}
2977882	2977955	-	74	157373141	Ssed_R0094	-	^{19 Cys tRNA}
2977986	2978061	-	76	157373141	Ssed_R0095	-	^{01 Gly tRNA}
2981892	2981982	-	91	157373141	Ssed_R0096	-	^{08 Ser tRNA}
2993210	2993300	-	91	157373141	Ssed_R0097	-	^{08 Ser tRNA}
3002743	3002819	+	77	157373141	Ssed_R0098	-	^{16 Met tRNA}
3002880	3002956	+	77	157373141	Ssed_R0099	-	^{16 Met tRNA}
3003172	3003248	+	77	157373141	Ssed_R0100	-	^{16 Met tRNA}
3003305	3003381	+	77	157373141	Ssed_R0101	-	^{16 Met tRNA}
3003496	3003572	+	77	157373141	Ssed_R0102	-	^{16 Met tRNA}
3511597	3511672	-	76	157373141	Ssed_R0103	-	^{02 Ala tRNA}
3511712	3511787	-	76	157373141	Ssed_R0104	-	^{04 Glu tRNA}
3511928	3512003	-	76	157373141	Ssed_R0105	-	^{04 Glu tRNA}
3512144	3512219	-	76	157373141	Ssed_R0106	-	^{04 Glu tRNA}
3512360	3512435	-	76	157373141	Ssed_R0107	-	^{04 Glu tRNA}
3512576	3512651	-	76	157373141	Ssed_R0108	-	^{04 Glu tRNA}
3512754	3512829	-	76	157373141	Ssed_R0109	-	^{04 Glu tRNA}
3512932	3513007	-	76	157373141	Ssed_R0110	-	^{04 Glu tRNA}
3513110	3513185	-	76	157373141	Ssed_R0111	-	^{04 Glu tRNA}
3513288	3513363	-	76	157373141	Ssed_R0112	-	^{04 Glu tRNA}
3513466	3513541	-	76	157373141	Ssed_R0113	-	^{04 Glu tRNA}
3513688	3513763	-	76	157373141	Ssed_R0114	-	^{02 Ala tRNA}
3515598	3515673	+	76	157373141	Ssed_R0115	-	^{13 Val tRNA}
3515721	3515796	+	76	157373141	Ssed_R0116	-	^{13 Val tRNA}
3515834	3515909	+	76	157373141	Ssed_R0117	-	^{13 Val tRNA}
3515947	3516022	+	76	157373141	Ssed_R0118	-	^{13 Val tRNA}
3516060	3516135	+	76	157373141	Ssed_R0119	-	^{13 Val tRNA}
3516173	3516248	+	76	157373141	Ssed_R0120	-	^{13 Val tRNA}
3516286	3516361	+	76	157373141	Ssed_R0121	-	^{13 Val tRNA}
3516399	3516474	+	76	157373141	Ssed_R0122	-	^{13 Val tRNA}
3516512	3516587	+	76	157373141	Ssed_R0123	-	^{13 Val tRNA}
3733990	3734065	+	76	157373141	Ssed_R0124	-	^{11 Arg tRNA}
4134579	4134655	-	77	157373141	Ssed_R0125	-	^{16 Met tRNA}
4134759	4134845	-	87	157373141	Ssed_R0126	-	^{15 Leu tRNA}
4220684	4220758	-	75	157373141	Ssed_R0127	-	^{05 Gln tRNA}
4220782	4220866	-	85	157373141	Ssed_R0128	-	^{15 Leu tRNA}
4220973	4221047	-	75	157373141	Ssed_R0129	-	^{05 Gln tRNA}
4221098	4221182	-	85	157373141	Ssed_R0130	-	^{15 Leu tRNA}
4221276	4221352	-	77	157373141	Ssed_R0131	-	^{16 Met tRNA}
4221370	4221444	-	75	157373141	Ssed_R0132	-	^{05 Gln tRNA}
4221495	4221579	-	85	157373141	Ssed_R0133	-	^{15 Leu tRNA}
4221701	4221777	-	77	157373141	Ssed_R0134	-	^{16 Met tRNA}
4252089	4252165	-	77	157373141	Ssed_R0135	-	^{20 Trp tRNA}
4253454	4253569	-	116	157373141	Ssed_R0136	-	5S ribosomal RNA
4253708	4256603	-	2896	157373141	Ssed_R0137	-	23S ribosomal RNA
4256952	4258488	-	1537	157373141	Ssed_R0138	-	16S ribosomal RNA
4266677	4266752	+	76	157373141	Ssed_R0139	-	^{17 Phe tRNA}
4536925	4537011	+	87	157373141	Ssed_R0140	-	^{15 Leu tRNA}
4901077	4901161	-	85	157373141	Ssed_R0141	-	^{15 Leu tRNA}
5093479	5093555	-	77	157373141	Ssed_R0142	-	^{03 Pro tRNA}
5093605	5093681	-	77	157373141	Ssed_R0143	-	^{03 Pro tRNA}
5093730	5093805	-	76	157373141	Ssed_R0144	-	^{09 His tRNA}
5093851	5093927	-	77	157373141	Ssed_R0145	-	^{11 Arg tRNA}
5221263	5221560	-	298	157373141	Ssed_R0146	-	RNA component of RNaseP
5255523	5255638	-	116	157373141	Ssed_R0147	-	5S ribosomal RNA
5255750	5258645	-	2896	157373141	Ssed_R0148	-	23S ribosomal RNA
5258985	5260519	-	1535	157373141	Ssed_R0149	-	16S ribosomal RNA
5303338	5303411	-	74	157373141	Ssed_R0150	-	^{01 Gly tRNA}
5303447	5303531	-	85	157373141	Ssed_R0151	-	^{18 Tyr tRNA}
5303539	5303614	-	76	157373141	Ssed_R0152	-	^{12 Thr tRNA}
5307324	5307400	-	77	157373141	Ssed_R0153	-	^{06 Asp tRNA}
5307505	5307620	-	116	157373141	Ssed_R0154	-	5S ribosomal RNA
5307759	5310654	-	2896	157373141	Ssed_R0155	-	23S ribosomal RNA
5310997	5311072	-	76	157373141	Ssed_R0156	-	^{02 Ala tRNA}
5311143	5311219	-	77	157373141	Ssed_R0157	-	^{14 Ile tRNA}
5311294	5312828	-	1535	157373141	Ssed_R0158	-	16S ribosomal RNA
5465541	5465617	-	77	157373141	Ssed_R0159	-	^{06 Asp tRNA}
5465730	5465845	-	116	157373141	Ssed_R0160	-	5S ribosomal RNA
5465984	5468879	-	2896	157373141	Ssed_R0161	-	23S ribosomal RNA
5469219	5470753	-	1535	157373141	Ssed_R0162	-	16S ribosomal RNA
5472481	5472596	-	116	157373141	Ssed_R0163	-	5S ribosomal RNA
5472742	5475640	-	2899	157373141	Ssed_R0164	-	23S ribosomal RNA
5476002	5477536	-	1535	157373141	Ssed_R0165	-	16S ribosomal RNA