Геном прокариот/Материалы:NC 003155
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Базовый уровень статей |
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LOCUS NC_003155 9025608 bp DNA linear BCT 13-APR-2006
DEFINITION Streptomyces avermitilis MA-4680, complete genome.
ACCESSION NC_003155
VERSION NC_003155.3 GI:57833846
KEYWORDS .
SOURCE Streptomyces avermitilis MA-4680
ORGANISM Streptomyces avermitilis MA-4680
Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
Streptomycineae; Streptomycetaceae; Streptomyces.
REFERENCE 1
AUTHORS Ikeda,H., Ishikawa,J., Hanamoto,A., Shinose,M., Kikuchi,H.,
Shiba,T., Sakaki,Y., Hattori,M. and Omura,S.
TITLE Complete genome sequence and comparative analysis of the industrial
microorganism Streptomyces avermitilis
JOURNAL Nat. Biotechnol. 21 (5), 526-531 (2003)
PUBMED 12692562
REFERENCE 2
AUTHORS Omura,S., Ikeda,H., Ishikawa,J., Hanamoto,A., Takahashi,C.,
Shinose,M., Takahashi,Y., Horikawa,H., Nakazawa,H., Osonoe,T.,
Kikuchi,H., Shiba,T., Sakaki,Y. and Hattori,M.
TITLE Genome sequence of an industrial microorganism Streptomyces
avermitilis: deducing the ability of producing secondary
metabolites
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 98 (21), 12215-12220 (2001)
PUBMED 11572948
REFERENCE 3 (bases 1 to 9025608)
AUTHORS .
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 4 (bases 1 to 9025608)
AUTHORS Omura,S., Ikeda,H., Ishikawa,J., Hanamoto,A., Takahashi,C.,
Shinose,M., Takahashi,Y., Horikawa,H., Nakazawa,H., Osonoe,T.,
Kushida,N., Shiba,T., Sakaki,Y. and Hattori,M.
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2002) Kitasato University, Kitasato Institute for
Life Sciences, 1-15-1 Kitasato, Sagamihara, Kanagawa 228-8555,
Japan
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from BA000030.
On Jan 14, 2005 this sequence version replaced gi:29826540.
Расположение РНК
править| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 357776 | 357847 | + | 72 | 57833846 | SAVt01 | - | Anticodon: CAC |
| 1675869 | 1675942 | + | 74 | 57833846 | SAVt02 | - | Anticodon: CAT |
| 1965347 | 1965423 | - | 77 | 57833846 | SAVt03 | - | Anticodon: GGG |
| 1992012 | 1992088 | - | 77 | 57833846 | SAVt04 | - | Anticodon: GGG |
| 2222599 | 2222686 | - | 88 | 57833846 | SAVt05 | - | Anticodon: GAG |
| 3072632 | 3072707 | - | 76 | 57833846 | SAVt06 | - | Anticodon: GGT |
| 3073559 | 3073684 | - | 126 | 57833846 | SAVr01 | - | 5S ribosomal RNA |
| 3073772 | 3076895 | - | 3124 | 57833846 | SAVr02 | - | 23S ribosomal RNA |
| 3077206 | 3078735 | - | 1530 | 57833846 | SAVr03 | - | 16S ribosomal RNA |
| 3295252 | 3295324 | - | 73 | 57833846 | SAVt07 | - | Anticodon: CTC |
| 3295345 | 3295416 | - | 72 | 57833846 | SAVt08 | - | Anticodon: CTG |
| 3295438 | 3295510 | - | 73 | 57833846 | SAVt09 | - | Anticodon: CTC |
| 3295573 | 3295645 | - | 73 | 57833846 | SAVt10 | - | Anticodon: CTC |
| 3295688 | 3295759 | - | 72 | 57833846 | SAVt11 | - | Anticodon: CTG |
| 3655871 | 3655942 | + | 72 | 57833846 | SAVt12 | - | Anticodon: CCG |
| 3813093 | 3813166 | - | 74 | 57833846 | SAVt13 | - | Anticodon: CAT |
| 3815456 | 3815530 | - | 75 | 57833846 | SAVt14 | - | Anticodon: CAT |
| 4362610 | 4362695 | - | 86 | 57833846 | SAVt15 | - | Anticodon: TAA |
| 4410534 | 4410608 | + | 75 | 57833846 | SAVt16 | - | Anticodon: TTG |
| 4542466 | 4542542 | - | 77 | 57833846 | SAVt17 | - | Anticodon: CGC |
| 4589760 | 4589835 | + | 76 | 57833846 | SAVt18 | - | Anticodon: CCT |
| 4886830 | 4886906 | - | 77 | 57833846 | SAVt19 | - | Anticodon: TGT |
| 5024100 | 5024225 | - | 126 | 57833846 | SAVr04 | - | 5S ribosomal RNA |
| 5024313 | 5027435 | - | 3123 | 57833846 | SAVr05 | - | 23S ribosomal RNA |
| 5027746 | 5029275 | - | 1530 | 57833846 | SAVr06 | - | 16S ribosomal RNA |
| 5051970 | 5052043 | - | 74 | 57833846 | SAVt20 | - | Anticodon: CAT |
| 5055486 | 5055561 | - | 76 | 57833846 | SAVt21 | - | Anticodon: TTT |
| 5063087 | 5063159 | + | 73 | 57833846 | SAVt22 | - | Anticodon: TTC |
| 5063207 | 5063281 | + | 75 | 57833846 | SAVt23 | - | Anticodon: GTC |
| 5063306 | 5063382 | + | 77 | 57833846 | SAVt24 | - | Anticodon: GAA |
| 5068123 | 5068197 | + | 75 | 57833846 | SAVt25 | - | Anticodon: GTC |
| 5081791 | 5081866 | + | 76 | 57833846 | SAVt26 | - | Anticodon: GCC |
| 5085779 | 5085854 | + | 76 | 57833846 | SAVt27 | - | Anticodon: GCC |
| 5095065 | 5095146 | - | 82 | 57833846 | SAVs01 | - | small cytoplasmic, RNA (4.5S RNA) |
| 5095224 | 5095311 | + | 88 | 57833846 | SAVt28 | - | Anticodon: GGA |
| 5129698 | 5129782 | + | 85 | 57833846 | SAVt29 | - | Anticodon: CGA |
| 5154937 | 5155009 | - | 73 | 57833846 | SAVt30 | - | Anticodon: ACG |
| 5155215 | 5155305 | - | 91 | 57833846 | SAVt31 | - | Anticodon: GCT |
| 5177691 | 5177777 | - | 87 | 57833846 | SAVt32 | - | Anticodon: TGA |
| 5206939 | 5207028 | - | 90 | 57833846 | SAVt33 | - | Anticodon: GCT |
| 5299302 | 5299378 | + | 77 | 57833846 | SAVt34 | - | Anticodon: GAT |
| 5304905 | 5304977 | + | 73 | 57833846 | SAVt35 | - | Anticodon: TGC |
| 5322106 | 5322192 | + | 87 | 57833846 | SAVt36 | - | Anticodon: CAG |
| 5452769 | 5452842 | - | 74 | 57833846 | SAVt37 | - | Anticodon: CCC |
| 5594481 | 5594554 | - | 74 | 57833846 | SAVt38 | - | Anticodon: CGG |
| 5650316 | 5650389 | + | 74 | 57833846 | SAVt39 | - | Anticodon: CGT |
| 5759344 | 5760873 | + | 1530 | 57833846 | SAVr07 | - | 16S ribosomal RNA |
| 5761184 | 5764306 | + | 3123 | 57833846 | SAVr08 | - | 23S ribosomal RNA |
| 5764394 | 5764519 | + | 126 | 57833846 | SAVr09 | - | 5S ribosomal RNA |
| 5950170 | 5950251 | + | 82 | 57833846 | SAVt40 | - | Anticodon: GTA |
| 5956602 | 5956674 | + | 73 | 57833846 | SAVt41 | - | Anticodon: GGT |
| 5956721 | 5956793 | + | 73 | 57833846 | SAVt42 | - | Anticodon: CAT |
| 5964532 | 5964607 | + | 76 | 57833846 | SAVt43 | - | Anticodon: CCA |
| 6124388 | 6125917 | + | 1530 | 57833846 | SAVr10 | - | 16S ribosomal RNA |
| 6126228 | 6129350 | + | 3123 | 57833846 | SAVr11 | - | 23S ribosomal RNA |
| 6129438 | 6129563 | + | 126 | 57833846 | SAVr12 | - | 5S ribosomal RNA |
| 6202758 | 6203146 | + | 389 | 57833846 | SAVs02 | - | stable RNA |
| 6242261 | 6242335 | - | 75 | 57833846 | SAVt44 | - | Anticodon: GCA |
| 6279029 | 6279112 | - | 84 | 57833846 | SAVt45 | - | Anticodon: TAG |
| 6329202 | 6329278 | - | 77 | 57833846 | SAVt46 | - | Anticodon: CTT |
| 6335068 | 6335141 | - | 74 | 57833846 | SAVt47 | - | Anticodon: CTT |
| 6349312 | 6349385 | - | 74 | 57833846 | SAVt48 | - | Anticodon: CTT |
| 6372705 | 6372777 | - | 73 | 57833846 | SAVt49 | - | Anticodon: GTG |
| 6501509 | 6501584 | - | 76 | 57833846 | SAVt50 | - | Anticodon: TCT |
| 6604435 | 6604508 | - | 74 | 57833846 | SAVt51 | - | Anticodon: TCC |
| 6604662 | 6604738 | + | 77 | 57833846 | SAVt52 | - | Anticodon: TGG |
| 6653846 | 6653918 | + | 73 | 57833846 | SAVt53 | - | Anticodon: GGC |
| 6658303 | 6658375 | + | 73 | 57833846 | SAVt54 | - | Anticodon: GGC |
| 6875603 | 6875675 | + | 73 | 57833846 | SAVt55 | - | Anticodon: GTT |
| 6875681 | 6875753 | + | 73 | 57833846 | SAVt56 | - | Anticodon: GTT |
| 6875920 | 6875996 | + | 77 | 57833846 | SAVt57 | - | Anticodon: CAT |
| 7021984 | 7022058 | + | 75 | 57833846 | SAVt58 | - | Anticodon: TAC |
| 7471270 | 7471342 | - | 73 | 57833846 | SAVt59 | - | Anticodon: CAA |
| 7765515 | 7767044 | + | 1530 | 57833846 | SAVr13 | - | 16S ribosomal RNA |
| 7767351 | 7770474 | + | 3124 | 57833846 | SAVr14 | - | 23S ribosomal RNA |
| 7770611 | 7770736 | + | 126 | 57833846 | SAVr15 | - | 5S ribosomal RNA |
| 7937463 | 7937550 | - | 88 | 57833846 | SAVt60 | - | Anticodon: GAG |
| 8122352 | 8122426 | - | 75 | 57833846 | SAVt61 | - | Anticodon: GAC |
| 8122467 | 8122538 | - | 72 | 57833846 | SAVt62 | - | Anticodon: GAC |
| 8122558 | 8122629 | - | 72 | 57833846 | SAVt63 | - | Anticodon: GAC |
| 8122631 | 8122704 | - | 74 | 57833846 | SAVt64 | - | Anticodon: GCA |
| 8122743 | 8122815 | - | 73 | 57833846 | SAVt65 | - | Anticodon: GCC |
| 8129564 | 8129635 | + | 72 | 57833846 | SAVt66 | - | Anticodon: CAC |
| 8139938 | 8140012 | + | 75 | 57833846 | SAVt67 | - | Anticodon: CAC |
| 8328598 | 8330127 | + | 1530 | 57833846 | SAVr16 | - | 16S ribosomal RNA |
| 8330438 | 8333560 | + | 3123 | 57833846 | SAVr17 | - | 23S ribosomal RNA |
| 8333648 | 8333773 | + | 126 | 57833846 | SAVr18 | - | 5S ribosomal RNA |
| 8576989 | 8577062 | + | 74 | 57833846 | SAVt68 | - | Anticodon: GGG |