Геном прокариот/Материалы:NC 005957

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_005957            5237682 bp    DNA     circular BCT 22-JUN-2007
   DEFINITION  Bacillus thuringiensis serovar konkukian str. 97-27, complete
               genome.
   ACCESSION   NC_005957
   VERSION     NC_005957.1  GI:49476684
   KEYWORDS    .
   SOURCE      Bacillus thuringiensis serovar konkukian str. 97-27
     ORGANISM  Bacillus thuringiensis serovar konkukian str. 97-27
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus
               cereus group.
   REFERENCE   1  (bases 1 to 5237682)
     AUTHORS   Han,C.S., Xie,G., Challacombe,J.F., Altherr,M.R., Bhotika,S.S.,
               Brown,N., Bruce,D., Campbell,C.S., Campbell,M.L., Chen,J.,
               Chertkov,O., Cleland,C., Dimitrijevic,M., Doggett,N.A.,
               Fawcett,J.J., Glavina,T., Goodwin,L.A., Green,L.D., Hill,K.K.,
               Hitchcock,P., Jackson,P.J., Keim,P., Kewalramani,A.R., Longmire,J.,
               Lucas,S., Malfatti,S., McMurry,K., Meincke,L.J., Misra,M.,
               Moseman,B.L., Mundt,M., Munk,A.C., Okinaka,R.T.,
               Parson-Quintana,B., Reilly,L.P., Richardson,P., Robinson,D.L.,
               Rubin,E., Saunders,E., Tapia,R., Tesmer,J.G., Thayer,N.,
               Thompson,L.S., Tice,H., Ticknor,L.O., Wills,P.L., Brettin,T.S. and
               Gilna,P.
     TITLE     Pathogenomic sequence analysis of Bacillus cereus and Bacillus
               thuringiensis isolates closely related to Bacillus anthracis
     JOURNAL   J. Bacteriol. 188 (9), 3382-3390 (2006)
      PUBMED   16621833
     REMARK    Erratum:[J Bacteriol. 2006 Nov;188(21):7711. Brown, Nancy [added];
               Green, Lance D [added]]
   REFERENCE   2  (bases 1 to 5237682)
     AUTHORS   Brettin,T.S., Bruce,D., Challacombe,J.F., Gilna,P., Han,C.,
               Hill,K., Hitchcock,P., Jackson,P., Keim,P., Longmire,J., Lucas,S.,
               Okinaka,R., Richardson,P., Rubin,E. and Tice,H.
     TITLE     Complete genome sequence of Bacillus thuringiensis 97-27
     JOURNAL   Unpublished
   REFERENCE   3  (bases 1 to 5237682)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 5237682)
     AUTHORS   Brettin,T.S., Bruce,D., Challacombe,J.F., Gilna,P., Han,C.,
               Hill,K., Hitchcock,P., Jackson,P., Keim,P., Longmire,J., Lucas,S.,
               Okinaka,R., Richardson,P., Rubin,E. and Tice,H.
     TITLE     Direct Submission
     JOURNAL   Submitted (07-JUN-2004) Joint Genome Institute, Department of
               Energy, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE017355.
               Bacillus thuringiensis 97-27 (subsp. konkukian (serotype H34)) was
               originally isolated from a case of severe human tissue necrosis
               (Bacillus thuringiensis subsp. konkukian (serotype H34)
               superinfection: Case report and experimental evidence of
               pathogenicity in immunosupporessed mice. Hernandez, E, Ramisse, F,
               Ducoureau, J-P, Cruel, T, and Cavallo, J-D. J Clin Microbiol 1998
               36(7):2138-2139). B. thuringiensis is indigenous to many habitats
               worldwide; these include soil, insects, deciduous and coniferous
               leaves (Prediction of insecticidal activity of Bacillus
               thuringiensis strains by polymerase chain reaction product
               profiles. Carozzi, NB, Kramer, VC, Warren, GW, Evola, S, and
               Koziel, MG. Appl Environ Microbiol. 1991 57(11):3057-61). B.
               thuringiensis is an insect pathogen that is widely used as a
               biopesticide in commercial agriculture. Infection of humans is
               unusual. The apparent pathogenic properties of B. thuringiensis
               97-27 are very unusual for B. thuringiensis; unlike most B.
               thuringiensis isolates, this isolate is very closely related to B.
               anthracis based on phylogenetic analysis (Fluorescent amplified
               fragment length polymorphism analysis of Bacillus anthracis,
               Bacillus cereus, and Bacillus thuringiensis isolates. Hill, KK,
               Ticknor, LO, Okinaka, RT, Asay, M, Blair, H, Bliss, KA, Laker, M,
               Pardington, PE, Richardson, AP, Tonks, M, Beecher, DJ, Kemp, JD,
               Kolsto, A-B, Wong, ACL, Keim, P, and Jackson, PJ. Appl Environ
               Microbiol 70(2):1068-1080. Plasmid and fosmid libraries were
               prepared at the Joint Genome Institute in Los Alamos (JGI-LANL),
               NM. Shotgun sequencing was performed at the JGI Production Genomics
               Facility (JGI-PGF) in Walnut Creek, CA to a coverage of 24x.
               Finishing was performed at JGI-LANL starting with 83 contigs and 16
               scaffolds. Repetitive regions were identified, assembled and
               finished by manually checking paired reads close to each repeat in
               the assembly with consed and then making a subassembly for each
               repetitive region. Fifty five gaps were closed with primer walks
               and 16 by PCR.Gene predictions were obtained using Glimmer and
               tRNAs were identified using tRNAScan-SE. Basic analysis of the gene
               predictions was performed by comparing coding sequences against the
               PFam, BLOCKS and Prodom databases. Gene definitions and functional
               classes were added manually by a team of annotators at JGI-LANL,
               using BLAST results in addition to information from the basic
               analysis. A total of 5540 features have been annotated on the
               sequence record.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
9337	10846	+	1510	49476684	rRNA-16SrRNA_1	-	16S ribosomal RNA
10994	11073	+	80	49476684	tRNA-Ile-2	-	^{14 Ile tRNA}
11079	11157	+	79	49476684	tRNA-Ala-5	-	^{02 Ala tRNA}
11249	14160	+	2912	49476684	rRNA-23SrRNA_1	-	23S ribosomal RNA
14209	14326	+	118	49476684	rRNA-5SrRNA_1	-	5S ribosomal RNA
21776	21871	+	96	49476684	tRNA-Ser-5	-	^{08 Ser tRNA}
29138	30647	+	1510	49476684	rRNA-16SrRNA_2	-	16S ribosomal RNA
30795	30874	+	80	49476684	tRNA-Ile-4	-	^{14 Ile tRNA}
30880	30958	+	79	49476684	tRNA-Ala-1	-	^{02 Ala tRNA}
31050	33960	+	2911	49476684	rRNA-23SrRNA_2	-	23S ribosomal RNA
34009	34126	+	118	49476684	rRNA-5SrRNA_2	-	5S ribosomal RNA
64440	64516	+	77	49476684	tRNA-Met-1	-	^{16 Met tRNA}
64527	64601	+	75	49476684	tRNA-Glu-7	-	^{04 Glu tRNA}
82466	83975	+	1510	49476684	rRNA-16SrRNA_3	-	16S ribosomal RNA
84151	87061	+	2911	49476684	rRNA-23SrRNA_3	-	23S ribosomal RNA
87162	87275	+	114	49476684	rRNA-5SrRNA_3	-	5S ribosomal RNA
87281	87359	+	79	49476684	tRNA-Val-5	-	^{13 Val tRNA}
87361	87439	+	79	49476684	tRNA-Thr-1	-	^{12 Thr tRNA}
87450	87528	+	79	49476684	tRNA-Lys-4	-	^{10 Lys tRNA}
87541	87624	+	84	49476684	tRNA-Leu-8	-	^{15 Leu tRNA}
87651	87728	+	78	49476684	tRNA-Gly-2	-	^{01 Gly tRNA}
87742	87833	+	92	49476684	tRNA-Leu-6	-	^{15 Leu tRNA}
87834	87910	+	77	49476684	tRNA-Arg-5	-	^{11 Arg tRNA}
87916	87992	+	77	49476684	tRNA-Pro-2	-	^{03 Pro tRNA}
87999	88077	+	79	49476684	tRNA-Ala-3	-	^{02 Ala tRNA}
88179	89688	+	1510	49476684	rRNA-16SrRNA_4	-	16S ribosomal RNA
89864	92774	+	2911	49476684	rRNA-23SrRNA_4	-	23S ribosomal RNA
92822	92939	+	118	49476684	rRNA-5SrRNA_4	-	5S ribosomal RNA
151247	152755	+	1509	49476684	rRNA-16SrRNA_5	-	16S ribosomal RNA
152931	155841	+	2911	49476684	rRNA-23SrRNA_5	-	23S ribosomal RNA
155927	156040	+	114	49476684	rRNA-5SrRNA_5	-	5S ribosomal RNA
156050	156127	+	78	49476684	tRNA-Asn-3	-	^{07 Asn tRNA}
156129	156204	+	76	49476684	tRNA-Thr-3	-	^{12 Thr tRNA}
156226	156303	+	78	49476684	tRNA-Glu-4	-	^{04 Glu tRNA}
156306	156384	+	79	49476684	tRNA-Val-6	-	^{13 Val tRNA}
156399	156485	+	87	49476684	tRNA-Tyr-2	-	^{18 Tyr tRNA}
156548	156625	+	78	49476684	tRNA-Gln-4	-	^{05 Gln tRNA}
156628	156706	+	79	49476684	tRNA-Lys-1	-	^{10 Lys tRNA}
156709	156783	+	75	49476684	tRNA-Gly-6	-	^{01 Gly tRNA}
156791	156866	+	76	49476684	tRNA-Ala-2	-	^{02 Ala tRNA}
251006	251083	+	78	49476684	tRNA-Asn-1	-	^{07 Asn tRNA}
251084	251177	+	94	49476684	tRNA-Ser-2	-	^{08 Ser tRNA}
251183	251260	+	78	49476684	tRNA-Glu-1	-	^{04 Glu tRNA}
251262	251340	+	79	49476684	tRNA-Val-3	-	^{13 Val tRNA}
251384	251462	+	79	49476684	tRNA-Asp-4	-	^{06 Asp tRNA}
251547	251624	+	78	49476684	tRNA-Gln-3	-	^{05 Gln tRNA}
251627	251702	+	76	49476684	tRNA-Lys-5	-	^{10 Lys tRNA}
251716	251804	+	89	49476684	tRNA-Leu-5	-	^{15 Leu tRNA}
251897	251976	+	80	49476684	tRNA-Arg-3	-	^{11 Arg tRNA}
251978	252057	+	80	49476684	tRNA-Pro-4	-	^{03 Pro tRNA}
252056	252129	+	74	49476684	tRNA-Gly-3	-	^{01 Gly tRNA}
252230	253739	+	1510	49476684	rRNA-16SrRNA_6	-	16S ribosomal RNA
253915	256825	+	2911	49476684	rRNA-23SrRNA_6	-	23S ribosomal RNA
256874	256991	+	118	49476684	rRNA-5SrRNA_6	-	5S ribosomal RNA
257001	257080	+	80	49476684	tRNA-Met-4	-	^{16 Met tRNA}
257081	257159	+	79	49476684	tRNA-Asp-1	-	^{06 Asp tRNA}
272749	274258	+	1510	49476684	rRNA-16SrRNA_7	-	16S ribosomal RNA
274434	277344	+	2911	49476684	rRNA-23SrRNA_7	-	23S ribosomal RNA
277392	277509	+	118	49476684	rRNA-5SrRNA_7	-	5S ribosomal RNA
279760	281269	+	1510	49476684	rRNA-16SrRNA_8	-	16S ribosomal RNA
281445	284355	+	2911	49476684	rRNA-23SrRNA_8	-	23S ribosomal RNA
284402	284519	+	118	49476684	rRNA-5SrRNA_8	-	5S ribosomal RNA
287106	288614	+	1509	49476684	rRNA-16SrRNA_9	-	16S ribosomal RNA
291748	291865	+	118	49476684	rRNA-5SrRNA_9	-	5S ribosomal RNA
297075	298584	+	1510	49476684	rRNA-16SrRNA_10	-	16S ribosomal RNA
298760	301671	+	2912	49476684	rRNA-23SrRNA_9	-	23S ribosomal RNA
301718	301836	+	119	49476684	BT9727_r02	-	5S ribosomal RNA
304222	305776	+	1555	49476684	BT9727_r01	-	16S ribosomal RNA
305935	308846	+	2912	49476684	rRNA-23SrRNA_10	-	23S ribosomal RNA
308895	309012	+	118	49476684	rRNA-5SrRNA_10	-	5S ribosomal RNA
521476	522985	+	1510	49476684	rRNA-16SrRNA_11	-	16S ribosomal RNA
523160	526070	+	2911	49476684	rRNA-23SrRNA_11	-	23S ribosomal RNA
526171	526284	+	114	49476684	rRNA-5SrRNA_11	-	5S ribosomal RNA
526293	526370	+	78	49476684	tRNA-Asn-4	-	^{07 Asn tRNA}
526370	526464	+	95	49476684	tRNA-Ser-3	-	^{08 Ser tRNA}
526479	526556	+	78	49476684	tRNA-Glu-3	-	^{04 Glu tRNA}
526559	526637	+	79	49476684	tRNA-Val-4	-	^{13 Val tRNA}
526659	526738	+	80	49476684	tRNA-Met-3	-	^{16 Met tRNA}
526739	526817	+	79	49476684	tRNA-Asp-5	-	^{06 Asp tRNA}
526824	526902	+	79	49476684	tRNA-Phe-2	-	^{17 Phe tRNA}
526918	526996	+	79	49476684	tRNA-Thr-5	-	^{12 Thr tRNA}
527004	527090	+	87	49476684	tRNA-Tyr-1	-	^{18 Tyr tRNA}
527095	527171	+	77	49476684	tRNA-Trp-2	-	^{20 Trp tRNA}
527188	527266	+	79	49476684	tRNA-His-1	-	^{09 His tRNA}
527327	527404	+	78	49476684	tRNA-Gln-2	-	^{05 Gln tRNA}
527407	527484	+	78	49476684	tRNA-Gly-9	-	^{01 Gly tRNA}
527496	527569	+	74	49476684	tRNA-Cys-1	-	^{19 Cys tRNA}
527577	527664	+	88	49476684	tRNA-Leu-2	-	^{15 Leu tRNA}
532092	532168	+	77	49476684	tRNA-Gly-8	-	^{01 Gly tRNA}
732426	733935	+	1510	49476684	rRNA-16SrRNA_12	-	16S ribosomal RNA
734110	737020	+	2911	49476684	rRNA-23SrRNA_12	-	23S ribosomal RNA
737121	737234	+	114	49476684	rRNA-5SrRNA_12	-	5S ribosomal RNA
737240	737318	+	79	49476684	tRNA-Val-7	-	^{13 Val tRNA}
737324	737410	+	87	49476684	tRNA-Tyr-3	-	^{18 Tyr tRNA}
737419	737496	+	78	49476684	tRNA-Gln-1	-	^{05 Gln tRNA}
737498	737576	+	79	49476684	tRNA-Lys-6	-	^{10 Lys tRNA}
737588	737671	+	84	49476684	tRNA-Leu-1	-	^{15 Leu tRNA}
737698	737775	+	78	49476684	tRNA-Gly-4	-	^{01 Gly tRNA}
737789	737880	+	92	49476684	tRNA-Leu-7	-	^{15 Leu tRNA}
737881	737957	+	77	49476684	tRNA-Arg-1	-	^{11 Arg tRNA}
737965	738041	+	77	49476684	tRNA-Pro-3	-	^{03 Pro tRNA}
738055	738130	+	76	49476684	tRNA-Ala-6	-	^{02 Ala tRNA}
738148	738243	+	96	49476684	tRNA-Ser-6	-	^{08 Ser tRNA}
738296	738391	+	96	49476684	tRNA-Ser-1	-	^{08 Ser tRNA}
738409	738488	+	80	49476684	tRNA-Met-6	-	^{16 Met tRNA}
738490	738568	+	79	49476684	tRNA-Asp-3	-	^{06 Asp tRNA}
738574	738652	+	79	49476684	tRNA-Phe-1	-	^{17 Phe tRNA}
738659	738734	+	76	49476684	tRNA-Thr-6	-	^{12 Thr tRNA}
738738	738811	+	74	49476684	tRNA-Trp-1	-	^{20 Trp tRNA}
738822	738901	+	80	49476684	tRNA-Ile-3	-	^{14 Ile tRNA}
738907	738984	+	78	49476684	tRNA-Asn-5	-	^{07 Asn tRNA}
738983	739057	+	75	49476684	tRNA-Glu-5	-	^{04 Glu tRNA}
969811	969884	+	74	49476684	tRNA-Cys-2	-	^{19 Cys tRNA}
1255195	1255270	-	76	49476684	tRNA-Val-2	-	^{13 Val tRNA}
4082558	4082634	-	77	49476684	tRNA-Met-7	-	^{16 Met tRNA}
4280195	4280271	-	77	49476684	tRNA-Gly-7	-	^{01 Gly tRNA}
4655315	4655389	-	75	49476684	tRNA-Glu-2	-	^{04 Glu tRNA}
4655393	4655486	-	94	49476684	tRNA-Ser-7	-	^{08 Ser tRNA}
4655491	4655568	-	78	49476684	tRNA-Asn-2	-	^{07 Asn tRNA}
4655573	4655652	-	80	49476684	tRNA-Ile-1	-	^{14 Ile tRNA}
4655660	4655733	-	74	49476684	tRNA-Gly-1	-	^{01 Gly tRNA}
4655744	4655822	-	79	49476684	tRNA-Lys-3	-	^{10 Lys tRNA}
4655830	4655908	-	79	49476684	tRNA-Thr-2	-	^{12 Thr tRNA}
4655920	4655998	-	79	49476684	tRNA-Phe-3	-	^{17 Phe tRNA}
4656008	4656086	-	79	49476684	tRNA-Asp-2	-	^{06 Asp tRNA}
4656085	4656164	-	80	49476684	tRNA-Met-5	-	^{16 Met tRNA}
4656189	4656284	-	96	49476684	tRNA-Ser-4	-	^{08 Ser tRNA}
4656299	4656378	-	80	49476684	tRNA-Met-8	-	^{16 Met tRNA}
4656380	4656459	-	80	49476684	tRNA-Met-2	-	^{16 Met tRNA}
4656477	4656552	-	76	49476684	tRNA-Ala-4	-	^{02 Ala tRNA}
4656565	4656641	-	77	49476684	tRNA-Pro-1	-	^{03 Pro tRNA}
4656649	4656725	-	77	49476684	tRNA-Arg-4	-	^{11 Arg tRNA}
4656726	4656817	-	92	49476684	tRNA-Leu-4	-	^{15 Leu tRNA}
4656831	4656908	-	78	49476684	tRNA-Gly-5	-	^{01 Gly tRNA}
4656935	4657018	-	84	49476684	tRNA-Leu-3	-	^{15 Leu tRNA}
4657038	4657116	-	79	49476684	tRNA-His-2	-	^{09 His tRNA}
4657123	4657201	-	79	49476684	tRNA-Thr-4	-	^{12 Thr tRNA}
4657203	4657281	-	79	49476684	tRNA-Val-1	-	^{13 Val tRNA}
4657286	4657399	-	114	49476684	rRNA-5SrRNA_13	-	5S ribosomal RNA
4657500	4660410	-	2911	49476684	rRNA-23SrRNA_13	-	23S ribosomal RNA
4660586	4662095	-	1510	49476684	rRNA-16SrRNA_13	-	16S ribosomal RNA
4873207	4873285	-	79	49476684	tRNA-Arg-2	-	^{11 Arg tRNA}
5217059	5217134	-	76	49476684	tRNA-Phe-4	-	^{17 Phe tRNA}
5217173	5217251	-	79	49476684	tRNA-Asp-6	-	^{06 Asp tRNA}
5217271	5217345	-	75	49476684	tRNA-Glu-6	-	^{04 Glu tRNA}
5217356	5217434	-	79	49476684	tRNA-Lys-2	-	^{10 Lys tRNA}