Геном прокариот/Материалы:NC 007205

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007205            1308759 bp    DNA     circular BCT 27-JAN-2007
   DEFINITION  Candidatus Pelagibacter ubique HTCC1062, complete genome.
   ACCESSION   NC_007205
   VERSION     NC_007205.1  GI:71082709
   KEYWORDS    .
   SOURCE      Candidatus Pelagibacter ubique HTCC1062
     ORGANISM  Candidatus Pelagibacter ubique HTCC1062
               Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; SAR11
               cluster; Candidatus Pelagibacter.
   REFERENCE   1  (bases 1 to 1308759)
     AUTHORS   Giovannoni,S.J., Bibbs,L., Cho,J.C., Stapels,M.D., Desiderio,R.,
               Vergin,K.L., Rappe,M.S., Laney,S., Wilhelm,L.J., Tripp,H.J.,
               Mathur,E.J. and Barofsky,D.F.
     TITLE     Proteorhodopsin in the ubiquitous marine bacterium SAR11
     JOURNAL   Nature 438 (7064), 82-85 (2005)
      PUBMED   16267553
   REFERENCE   2  (bases 1 to 1308759)
     AUTHORS   Giovannoni,S.J., Tripp,H.J., Givan,S., Podar,M., Vergin,K.L.,
               Baptista,D., Bibbs,L., Eads,J., Richardson,T.H., Noordewier,M.,
               Rappe,M.S., Short,J.M., Carrington,J.C. and Mathur,E.J.
     TITLE     Genome streamlining in a cosmopolitan oceanic bacterium
     JOURNAL   Science 309 (5738), 1242-1245 (2005)
      PUBMED   16109880
   REFERENCE   3  (bases 1 to 1308759)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUL-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 1308759)
     AUTHORS   Giovannoni,S.J., Tripp,H.J., Givan,S.A., Podar,M., Vergin,K.L.,
               Baptista,D., Bibbs,L., Eads,J., Richardson,T.H., Noordweir,M.,
               Rappe,M.S., Short,J., Carrington,J.C. and Mathur,E.J.
     TITLE     Direct Submission
     JOURNAL   Submitted (07-JUL-2005) Microbiology, Oregon State University,
               Corvallis, OR 97331, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000084.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
41674	41750	+	77	71082709	SAR11_tRNA_r_31	-	^{16 Met tRNA}
41817	41891	+	75	71082709	SAR11_tRNA_r_30	-	^{13 Val tRNA}
116151	116224	+	74	71082709	SAR11_tRNA_r_29	-	^{05 Gln tRNA}
319571	319645	+	75	71082709	SAR11_tRNA_r_28	-	^{01 Gly tRNA}
408517	408601	+	85	71082709	SAR11_tRNA_f_0	-	^{15 Leu tRNA}
415434	415510	+	77	71082709	SAR11_tRNA_r_27	-	^{11 Arg tRNA}
440216	440305	+	90	71082709	SAR11_tRNA_f_1	-	^{08 Ser tRNA}
462365	462438	+	74	71082709	SAR11_tRNA_r_26	-	^{12 Thr tRNA}
466556	466631	+	76	71082709	SAR11_tRNA_f_2	-	^{17 Phe tRNA}
467168	467242	+	75	71082709	SAR11_tRNA_f_3	-	^{09 His tRNA}
511358	512831	+	1474	71082709	SAR11_16S_rRNA	-	16S ribosomal RNA
512931	513007	+	77	71082709	SAR11_tRNA_f_4	-	^{14 Ile tRNA}
513017	513092	+	76	71082709	SAR11_tRNA_f_5	-	^{02 Ala tRNA}
513101	515997	+	2897	71082709	SAR11_23S_rRNA	-	23S ribosomal RNA
564530	564648	+	119	71082709	SAR11_5S_rRNA	-	5S ribosomal RNA
568432	568508	+	77	71082709	SAR11_tRNA_r_25	-	^{16 Met tRNA}
594400	594476	+	77	71082709	SAR11_tRNA_f_6	-	^{11 Arg tRNA}
843125	843209	+	85	71082709	SAR11_tRNA_f_7	-	^{15 Leu tRNA}
849156	849231	+	76	71082709	SAR11_tRNA_f_8	-	^{13 Val tRNA}
849245	849321	+	77	71082709	SAR11_tRNA_f_9	-	^{06 Asp tRNA}
936095	936171	+	77	71082709	SAR11_tRNA_f_10	-	^{11 Arg tRNA}
942409	942484	+	76	71082709	SAR11_tRNA_r_24	-	^{07 Asn tRNA}
942537	942610	+	74	71082709	SAR11_tRNA_r_23	-	^{19 Cys tRNA}
971328	971403	+	76	71082709	SAR11_tRNA_f_11	-	^{10 Lys tRNA}
975329	975418	+	90	71082709	SAR11_tRNA_r_22	-	^{08 Ser tRNA}
986221	986297	+	77	71082709	SAR11_tRNA_f_12	-	^{03 Pro tRNA}
990267	990341	+	75	71082709	SAR11_tRNA_f_13	-	^{04 Glu tRNA}
1031753	1031844	+	92	71082709	SAR11_tRNA_r_21	-	^{08 Ser tRNA}
1085433	1085508	+	76	71082709	SAR11_tRNA_r_20	-	^{20 Trp tRNA}
1086754	1086827	+	74	71082709	SAR11_tRNA_r_19	-	^{01 Gly tRNA}
1086874	1086959	+	86	71082709	SAR11_tRNA_r_18	-	^{18 Tyr tRNA}
1087868	1087943	+	76	71082709	SAR11_tRNA_f_14	-	^{12 Thr tRNA}
1088732	1088816	+	85	71082709	SAR11_tRNA_r_17	-	^{15 Leu tRNA}
1163196	1163277	+	82	71082709	SAR11_tRNA_r_16	-	^{16 Met tRNA}
1166596	1166672	+	77	71082709	SAR11_tRNA_r_15	-	^{16 Met tRNA}