Геном прокариот/Материалы:NC 007333

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007333            3642249 bp    DNA     circular BCT 16-AUG-2007
   DEFINITION  Thermobifida fusca YX, complete genome.
   ACCESSION   NC_007333
   VERSION     NC_007333.1  GI:72160406
   KEYWORDS    .
   SOURCE      Thermobifida fusca YX
     ORGANISM  Thermobifida fusca YX
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Streptosporangineae; Nocardiopsaceae; Thermobifida.
   REFERENCE   1  (bases 1 to 3642249)
     AUTHORS   Lykidis,A., Mavromatis,K., Ivanova,N., Anderson,I., Land,M.,
               DiBartolo,G., Martinez,M., Lapidus,A., Lucas,S., Copeland,A.,
               Richardson,P., Wilson,D.B. and Kyrpides,N.
     TITLE     Genome sequence and analysis of the soil cellulolytic actinomycete
               Thermobifida fusca YX
     JOURNAL   J. Bacteriol. 189 (6), 2477-2486 (2007)
      PUBMED   17209016
   REFERENCE   2  (bases 1 to 3642249)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-AUG-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3642249)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
               Chain,P., Schmutz,J., Larimer,F., Land,M., Lykidis,A. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUL-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000088.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from David Wilson
               (dbw3@cornell.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-PGF
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
12591	12664	+	74	72160406	Tfu_R0001	-	^{14 Ile tRNA}
32306	32393	+	88	72160406	Tfu_R0002	-	^{08 Ser tRNA}
57392	57483	-	92	72160406	Tfu_R0003	-	SRP RNA; RNA component of signal recognitionparticle
57613	57697	+	85	72160406	Tfu_R0004	-	^{08 Ser tRNA}
106706	106795	-	90	72160406	Tfu_R0005	-	^{08 Ser tRNA}
128270	128346	-	77	72160406	Tfu_R0006	-	^{03 Pro tRNA}
243307	243382	+	76	72160406	Tfu_R0007	-	^{12 Thr tRNA}
413892	413967	-	76	72160406	Tfu_R0008	-	^{11 Arg tRNA}
423371	423444	+	74	72160406	Tfu_R0009	-	^{02 Ala tRNA}
465582	465653	+	72	72160406	Tfu_R0010	-	^{05 Gln tRNA}
489279	489352	+	74	72160406	Tfu_R0011	-	^{15 Leu tRNA}
616275	616351	+	77	72160406	Tfu_R0012	-	^{16 Met tRNA}
616612	616688	+	77	72160406	Tfu_R0013	-	^{16 Met tRNA}
726244	726315	+	72	72160406	Tfu_R0014	-	^{05 Gln tRNA}
726378	726450	+	73	72160406	Tfu_R0015	-	^{04 Glu tRNA}
726571	726646	+	76	72160406	Tfu_R0016	-	^{04 Glu tRNA}
1027508	1027583	+	76	72160406	Tfu_R0017	-	^{07 Asn tRNA}
1037549	1037625	+	77	72160406	Tfu_R0018	-	^{16 Met tRNA}
1377115	1377201	-	87	72160406	Tfu_R0019	-	^{15 Leu tRNA}
1443042	1443115	-	74	72160406	Tfu_R0020	-	^{03 Pro tRNA}
2284041	2284368	-	328	72160406	Tfu_R0021	-	RNA component of RNaseP
2296780	2296853	-	74	72160406	Tfu_R0022	-	^{13 Val tRNA}
2386815	2386930	-	116	72160406	Tfu_R0023	-	5S ribosomal RNA
2387032	2390133	-	3102	72160406	Tfu_R0024	-	23S ribosomal RNA
2390559	2392029	-	1471	72160406	Tfu_R0025	-	16S ribosomal RNA
2471210	2471286	-	77	72160406	Tfu_R0026	-	^{13 Val tRNA}
2474102	2474177	+	76	72160406	Tfu_R0027	-	^{01 Gly tRNA}
2474212	2474284	+	73	72160406	Tfu_R0028	-	^{01 Gly tRNA}
2474311	2474385	+	75	72160406	Tfu_R0029	-	^{13 Val tRNA}
2476556	2476628	+	73	72160406	Tfu_R0030	-	^{01 Gly tRNA}
2476669	2476739	+	71	72160406	Tfu_R0031	-	^{19 Cys tRNA}
2476757	2476831	+	75	72160406	Tfu_R0032	-	^{13 Val tRNA}
2544226	2544298	-	73	72160406	Tfu_R0033	-	^{02 Ala tRNA}
2544721	2544793	-	73	72160406	Tfu_R0034	-	^{02 Ala tRNA}
2579506	2579583	-	78	72160406	Tfu_R0035	-	^{03 Pro tRNA}
2579691	2579761	+	71	72160406	Tfu_R0036	-	^{01 Gly tRNA}
2620594	2620669	-	76	72160406	Tfu_R0037	-	^{11 Arg tRNA}
2673862	2673934	+	73	72160406	Tfu_R0038	-	^{09 His tRNA}
2729672	2729747	-	76	72160406	Tfu_R0039	-	^{10 Lys tRNA}
2731568	2731643	-	76	72160406	Tfu_R0040	-	^{10 Lys tRNA}
2776923	2776998	+	76	72160406	Tfu_R0041	-	^{15 Leu tRNA}
2781709	2781824	-	116	72160406	Tfu_R0042	-	5S ribosomal RNA
2781926	2785027	-	3102	72160406	Tfu_R0043	-	23S ribosomal RNA
2785453	2786923	-	1471	72160406	Tfu_R0044	-	16S ribosomal RNA
2849594	2849668	+	75	72160406	Tfu_R0045	-	^{11 Arg tRNA}
2911968	2912337	-	370	72160406	Tfu_R0046	-	tmRNA
3039071	3039186	-	116	72160406	Tfu_R0047	-	5S ribosomal RNA
3039288	3042389	-	3102	72160406	Tfu_R0048	-	23S ribosomal RNA
3042912	3044382	-	1471	72160406	Tfu_R0049	-	16S ribosomal RNA
3129045	3129120	-	76	72160406	Tfu_R0050	-	^{20 Trp tRNA}
3135409	3135484	-	76	72160406	Tfu_R0051	-	^{16 Met tRNA}
3135588	3135663	-	76	72160406	Tfu_R0052	-	^{12 Thr tRNA}
3144854	3144936	-	83	72160406	Tfu_R0053	-	^{18 Tyr tRNA}
3259061	3259134	-	74	72160406	Tfu_R0054	-	^{12 Thr tRNA}
3272883	3272968	+	86	72160406	Tfu_R0055	-	^{15 Leu tRNA}
3355836	3355908	-	73	72160406	Tfu_R0056	-	^{17 Phe tRNA}
3355937	3356011	-	75	72160406	Tfu_R0057	-	^{06 Asp tRNA}
3356132	3356204	-	73	72160406	Tfu_R0058	-	^{04 Glu tRNA}
3372207	3372282	-	76	72160406	Tfu_R0059	-	^{10 Lys tRNA}
3447314	3447387	+	74	72160406	Tfu_R0060	-	^{01 Gly tRNA}
3458625	3458697	-	73	72160406	Tfu_R0061	-	^{11 Arg tRNA}
3539236	3539327	+	92	72160406	Tfu_R0062	-	^{08 Ser tRNA}
3574916	3575001	-	86	72160406	Tfu_R0063	-	^{15 Leu tRNA}
3588493	3588565	-	73	72160406	Tfu_R0064	-	^{02 Ala tRNA}
3590712	3590827	-	116	72160406	Tfu_R0065	-	5S ribosomal RNA
3590929	3594030	-	3102	72160406	Tfu_R0066	-	23S ribosomal RNA
3594580	3596050	-	1471	72160406	Tfu_R0067	-	16S ribosomal RNA