Геном прокариот/Материалы:NC 007517

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007517            3997420 bp    DNA     circular BCT 30-MAR-2007
   DEFINITION  Geobacter metallireducens GS-15, complete genome.
   ACCESSION   NC_007517
   VERSION     NC_007517.1  GI:78221228
   KEYWORDS    .
   SOURCE      Geobacter metallireducens GS-15
     ORGANISM  Geobacter metallireducens GS-15
               Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales;
               Geobacteraceae; Geobacter.
   REFERENCE   1  (bases 1 to 3997420)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
               Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Geobacter metallireducens GS-15
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3997420)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3997420)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
               Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (11-OCT-2005) US DOE Joint Genome Institute, 2400
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000148.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Derek Lovley
               (dlovley@bio.umass.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-PGF
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
123486	123561	+	76	78221228	Gmet_R0001	-	^{17 Phe tRNA}
441608	441684	+	77	78221228	Gmet_R0002	-	^{16 Met tRNA}
443850	444176	+	327	78221228	Gmet_R0003	-	RNA component of RNaseP
681964	682039	+	76	78221228	Gmet_R0004	-	^{12 Thr tRNA}
682062	682147	+	86	78221228	Gmet_R0005	-	^{18 Tyr tRNA}
682256	682332	+	77	78221228	Gmet_R0006	-	^{01 Gly tRNA}
682346	682421	+	76	78221228	Gmet_R0007	-	^{12 Thr tRNA}
683935	684011	+	77	78221228	Gmet_R0008	-	^{20 Trp tRNA}
958656	958743	+	88	78221228	Gmet_R0009	-	^{15 Leu tRNA}
1145263	1145339	-	77	78221228	Gmet_R0010	-	^{11 Arg tRNA}
1276464	1276561	-	98	78221228	Gmet_R0059	-	Sec tRNA
1310143	1311690	+	1548	78221228	Gmet_R0011	-	16S ribosomal RNA
1311744	1311820	+	77	78221228	Gmet_R0012	-	^{14 Ile tRNA}
1311828	1311903	+	76	78221228	Gmet_R0013	-	^{02 Ala tRNA}
1312120	1315102	+	2983	78221228	Gmet_R0014	-	23S ribosomal RNA
1315202	1315318	+	117	78221228	Gmet_R0015	-	5S ribosomal RNA
1376436	1376522	-	87	78221228	Gmet_R0016	-	^{15 Leu tRNA}
1471254	1471328	+	75	78221228	Gmet_R0017	-	^{05 Gln tRNA}
1471390	1471464	+	75	78221228	Gmet_R0018	-	^{04 Glu tRNA}
1518769	1518855	-	87	78221228	Gmet_R0019	-	^{15 Leu tRNA}
1518981	1519056	+	76	78221228	Gmet_R0020	-	^{02 Ala tRNA}
1579288	1579362	+	75	78221228	Gmet_R0021	-	^{13 Val tRNA}
1586938	1587014	+	77	78221228	Gmet_R0022	-	^{03 Pro tRNA}
1590261	1590337	+	77	78221228	Gmet_R0023	-	^{11 Arg tRNA}
1605845	1605921	+	77	78221228	Gmet_R0024	-	^{16 Met tRNA}
1773332	1773406	-	75	78221228	Gmet_R0025	-	^{13 Val tRNA}
1848673	1849028	+	356	78221228	Gmet_R0026	-	tmRNA
1850860	1850936	-	77	78221228	Gmet_R0027	-	^{11 Arg tRNA}
1999409	1999483	+	75	78221228	Gmet_R0028	-	^{01 Gly tRNA}
2084012	2084088	-	77	78221228	Gmet_R0029	-	^{06 Asp tRNA}
2084150	2084225	-	76	78221228	Gmet_R0030	-	^{13 Val tRNA}
2084233	2084309	-	77	78221228	Gmet_R0031	-	^{06 Asp tRNA}
2090156	2090238	-	83	78221228	Gmet_R0032	-	^{15 Leu tRNA}
2090298	2090374	-	77	78221228	Gmet_R0033	-	^{09 His tRNA}
2090388	2090464	-	77	78221228	Gmet_R0034	-	^{11 Arg tRNA}
2090470	2090547	-	78	78221228	Gmet_R0035	-	^{03 Pro tRNA}
2107482	2107558	-	77	78221228	Gmet_R0036	-	^{16 Met tRNA}
2177911	2177997	+	87	78221228	Gmet_R0037	-	^{15 Leu tRNA}
2178634	2178708	-	75	78221228	Gmet_R0038	-	^{19 Cys tRNA}
2582988	2583058	-	71	78221228	Gmet_R0039	-
2589986	2590060	-	75	78221228	Gmet_R0040	-	^{01 Gly tRNA}
3226815	3226889	-	75	78221228	Gmet_R0041	-	^{05 Gln tRNA}
3240983	3241100	-	118	78221228	Gmet_R0042	-	5S ribosomal RNA
3241199	3244181	-	2983	78221228	Gmet_R0043	-	16S ribosomal RNA
3244200	3244275	-	76	78221228	Gmet_R0044	-	^{02 Ala tRNA}
3244283	3244359	-	77	78221228	Gmet_R0045	-	^{14 Ile tRNA}
3244611	3246158	-	1548	78221228	Gmet_R0046	-	16S ribosomal RNA
3296070	3296144	+	75	78221228	Gmet_R0047	-	^{12 Thr tRNA}
3670283	3670358	+	76	78221228	Gmet_R0048	-	^{10 Lys tRNA}
3670409	3670486	+	78	78221228	Gmet_R0049	-	^{04 Glu tRNA}
3690064	3690139	+	76	78221228	Gmet_R0050	-	^{02 Ala tRNA}
3811323	3811399	-	77	78221228	Gmet_R0051	-	^{03 Pro tRNA}
3840934	3841043	-	110	78221228	Gmet_R0052	-	SRP RNA; RNA component of signal recognition particle
3841036	3841123	-	88	78221228	Gmet_R0053	-	^{08 Ser tRNA}
3861510	3861599	+	90	78221228	Gmet_R0054	-	^{08 Ser tRNA}
3910770	3910845	+	76	78221228	Gmet_R0055	-	^{07 Asn tRNA}
3958841	3958917	-	77	78221228	Gmet_R0056	-	^{11 Arg tRNA}
3959466	3959558	-	93	78221228	Gmet_R0057	-	^{08 Ser tRNA}
3959579	3959664	-	86	78221228	Gmet_R0058	-	^{08 Ser tRNA}