Геном прокариот/Материалы:NC 007519

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007519            3730232 bp    DNA     circular BCT 04-APR-2006
   DEFINITION  Desulfovibrio desulfuricans G20, complete genome.
   ACCESSION   NC_007519
   VERSION     NC_007519.1  GI:78355047
   KEYWORDS    .
   SOURCE      Desulfovibrio desulfuricans G20
     ORGANISM  Desulfovibrio desulfuricans G20
               Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales;
               Desulfovibrionaceae; Desulfovibrio.
   REFERENCE   1  (bases 1 to 3730232)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A.,
               Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Desulfovibrio desulfuricans G20
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3730232)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (31-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3730232)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A.,
               Schmutz,J., Larimer,F., Land,M., Ivanova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (01-AUG-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000112.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Judy Wall
               (wallj@missouri.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-PGF
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
69874	71392	+	1519	78355047	Dde_R0001	-	16S ribosomal RNA
71460	71536	+	77	78355047	Dde_R0002	-	^{14 Ile tRNA}
71551	71626	+	76	78355047	Dde_R0003	-	^{02 Ala tRNA}
71835	74651	+	2817	78355047	Dde_R0004	-	23S ribosomal RNA
74916	74979	+	64	78355047	Dde_R0005	-	5S ribosomal RNA
137031	137107	-	77	78355047	Dde_R0006	-	^{11 Arg tRNA}
179761	179836	-	76	78355047	Dde_R0007	-	^{10 Lys tRNA}
560298	560373	-	76	78355047	Dde_R0008	-	^{09 His tRNA}
640645	640722	-	78	78355047	Dde_R0009	-	^{04 Glu tRNA}
640737	640811	-	75	78355047	Dde_R0010	-	^{05 Gln tRNA}
677828	677903	+	76	78355047	Dde_R0011	-	^{13 Val tRNA}
703376	703453	+	78	78355047	Dde_R0012	-	^{04 Glu tRNA}
903897	903983	-	87	78355047	Dde_R0013	-	^{15 Leu tRNA}
917593	917678	-	86	78355047	Dde_R0014	-	^{15 Leu tRNA}
1028167	1028258	-	92	78355047	Dde_R0015	-	^{08 Ser tRNA}
1028399	1028487	-	89	78355047	Dde_R0016	-	SRP RNA; RNA component of signal recognition particle
1028529	1028620	-	92	78355047	Dde_R0017	-	^{08 Ser tRNA}
1109628	1109721	-	94	78355047	Dde_R0018	-	^{08 Ser tRNA}
1248668	1248743	+	76	78355047	Dde_R0019	-	^{12 Thr tRNA}
1309461	1310964	+	1504	78355047	Dde_R0020	-	16S ribosomal RNA
1311051	1311127	+	77	78355047	Dde_R0021	-	^{14 Ile tRNA}
1311142	1311217	+	76	78355047	Dde_R0022	-	^{02 Ala tRNA}
1311426	1314241	+	2816	78355047	Dde_R0023	-	23S ribosomal RNA
1314473	1314586	+	114	78355047	Dde_R0024	-	5S ribosomal RNA
1319605	1319680	-	76	78355047	Dde_R0025	-	^{10 Lys tRNA}
1321766	1321841	+	76	78355047	Dde_R0026	-	^{10 Lys tRNA}
1382523	1382598	-	76	78355047	Dde_R0027	-	^{07 Asn tRNA}
1383134	1383209	-	76	78355047	Dde_R0028	-	^{07 Asn tRNA}
1531715	1531804	-	90	78355047	Dde_R0029	-	Sec tRNA
1594575	1594652	-	78	78355047	Dde_R0030	-	^{03 Pro tRNA}
1626556	1626632	+	77	78355047	Dde_R0031	-	^{16 Met tRNA}
1722132	1722208	-	77	78355047	Dde_R0032	-	^{03 Pro tRNA}
1785177	1785480	-	304	78355047	Dde_R0033	-	RNA component of RNaseP
1787650	1787745	+	96	78355047	Dde_R0034	-	^{08 Ser tRNA}
1840105	1840181	-	77	78355047	Dde_R0035	-	^{11 Arg tRNA}
1840209	1840285	-	77	78355047	Dde_R0036	-	^{11 Arg tRNA}
1840308	1840384	-	77	78355047	Dde_R0037	-	^{11 Arg tRNA}
1988131	1988490	-	360	78355047	Dde_R0038	-	tmRNA
1997002	1997078	-	77	78355047	Dde_R0039	-	^{16 Met tRNA}
1997218	1997294	-	77	78355047	Dde_R0040	-	^{16 Met tRNA}
2031899	2031984	-	86	78355047	Dde_R0041	-	^{15 Leu tRNA}
2047102	2047178	+	77	78355047	Dde_R0042	-	^{11 Arg tRNA}
2175143	2175218	+	76	78355047	Dde_R0043	-	^{05 Gln tRNA}
2197430	2197505	+	76	78355047	Dde_R0044	-	^{16 Met tRNA}
2265062	2265146	-	85	78355047	Dde_R0045	-	^{15 Leu tRNA}
2365963	2366037	+	75	78355047	Dde_R0046	-	^{01 Gly tRNA}
2366060	2366134	+	75	78355047	Dde_R0047	-	^{19 Cys tRNA}
2366142	2366216	+	75	78355047	Dde_R0048	-	^{01 Gly tRNA}
2366288	2366363	+	76	78355047	Dde_R0049	-	^{01 Gly tRNA}
2366407	2366481	+	75	78355047	Dde_R0050	-	^{01 Gly tRNA}
2509400	2509486	+	87	78355047	Dde_R0051	-	^{15 Leu tRNA}
2604046	2604159	-	114	78355047	Dde_R0052	-	5S ribosomal RNA
2604393	2607206	-	2814	78355047	Dde_R0053	-	23S ribosomal RNA
2607415	2607490	-	76	78355047	Dde_R0054	-	^{02 Ala tRNA}
2607505	2607581	-	77	78355047	Dde_R0055	-	^{14 Ile tRNA}
2607679	2609167	-	1489	78355047	Dde_R0056	-	16S ribosomal RNA
2657235	2657309	-	75	78355047	Dde_R0057	-	^{13 Val tRNA}
2908395	2908486	-	92	78355047	Dde_R0058	-	^{08 Ser tRNA}
2969133	2969208	+	76	78355047	Dde_R0059	-	^{12 Thr tRNA}
2969214	2969299	+	86	78355047	Dde_R0060	-	^{18 Tyr tRNA}
2969352	2969428	+	77	78355047	Dde_R0061	-	^{01 Gly tRNA}
2969465	2969540	+	76	78355047	Dde_R0062	-	^{12 Thr tRNA}
2970953	2971029	+	77	78355047	Dde_R0063	-	^{20 Trp tRNA}
3012121	3012197	-	77	78355047	Dde_R0064	-	^{06 Asp tRNA}
3012203	3012278	-	76	78355047	Dde_R0065	-	^{13 Val tRNA}
3025302	3025378	-	77	78355047	Dde_R0066	-	^{06 Asp tRNA}
3048400	3048476	-	77	78355047	Dde_R0067	-	^{11 Arg tRNA}
3128059	3128136	+	78	78355047	Dde_R0068	-	^{04 Glu tRNA}
3247201	3247277	+	77	78355047	Dde_R0069	-	^{03 Pro tRNA}
3247482	3247557	+	76	78355047	Dde_R0070	-	^{12 Thr tRNA}
3405199	3405274	-	76	78355047	Dde_R0071	-	^{02 Ala tRNA}
3465584	3465670	+	87	78355047	Dde_R0072	-	^{15 Leu tRNA}
3514674	3514749	+	76	78355047	Dde_R0073	-	^{17 Phe tRNA}
3531911	3531997	-	87	78355047	Dde_R0074	-	^{15 Leu tRNA}
3533634	3533731	-	98	78355047	Dde_R0075	-	5S ribosomal RNA
3533981	3536778	-	2798	78355047	Dde_R0076	-	23S ribosomal RNA
3536987	3537062	-	76	78355047	Dde_R0077	-	^{02 Ala tRNA}
3537077	3537153	-	77	78355047	Dde_R0078	-	^{14 Ile tRNA}
3537239	3538739	-	1501	78355047	Dde_R0079	-	16S ribosomal RNA
3575981	3576057	-	77	78355047	Dde_R0080	-	^{16 Met tRNA}
3713040	3713115	-	76	78355047	Dde_R0081	-	^{02 Ala tRNA}