Геном прокариот/Материалы:NC 007576
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Базовый уровень статей |
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LOCUS NC_007576 1884661 bp DNA circular BCT 16-AUG-2007
DEFINITION Lactobacillus sakei subsp. sakei 23K, complete genome.
ACCESSION NC_007576
VERSION NC_007576.1 GI:81427616
KEYWORDS complete genome.
SOURCE Lactobacillus sakei subsp. sakei 23K
ORGANISM Lactobacillus sakei subsp. sakei 23K
Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
Lactobacillus.
REFERENCE 1 (bases 1 to 1884661)
AUTHORS Chaillou,S., Champomier-Verges,M.C., Cornet,M., Crutz-Le Coq,A.M.,
Dudez,A.M., Martin,V., Beaufils,S., Darbon-Rongere,E., Bossy,R.,
Loux,V. and Zagorec,M.
TITLE The complete genome sequence of the meat-borne lactic acid
bacterium Lactobacillus sakei 23K
JOURNAL Nat. Biotechnol. 23 (12), 1527-1533 (2005)
PUBMED 16273110
REFERENCE 2 (bases 1 to 1884661)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-NOV-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CR936503.
Clone requests: stephane.chaillou@jouy.inra.fr.
COMPLETENESS: full length.
Расположение РНК
править| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 72122 | 72197 | - | 76 | 81427616 | LSAt01 | - | Anticodon: CTT |
| 285387 | 285458 | + | 72 | 81427616 | LSAt02 | - | Anticodon: TTG |
| 306178 | 307748 | + | 1571 | 81427616 | LSAr01 | - | 16S ribosomal RNA |
| 307972 | 310890 | + | 2919 | 81427616 | LSAr02 | - | 23S ribosomal RNA |
| 310982 | 311098 | + | 117 | 81427616 | LSAr03 | - | 5S ribosomal RNA |
| 328601 | 328673 | + | 73 | 81427616 | LSAt03 | - | Anticodon: GGT |
| 445757 | 447106 | + | 1350 | 81427616 | LSAr04 | - | 16S ribosomal RNA |
| 447330 | 450248 | + | 2919 | 81427616 | LSAr05 | - | 23S ribosomal RNA |
| 450340 | 450456 | + | 117 | 81427616 | LSAr06 | - | 5S ribosomal RNA |
| 450467 | 450539 | + | 73 | 81427616 | LSAt04 | - | Anticodon: TAC |
| 450542 | 450614 | + | 73 | 81427616 | LSAt05 | - | Anticodon: TTT |
| 450637 | 450720 | + | 84 | 81427616 | LSAt06 | - | Anticodon: TAG |
| 450756 | 450828 | + | 73 | 81427616 | LSAt07 | - | Anticodon: TGT |
| 450836 | 450907 | + | 72 | 81427616 | LSAt08 | - | Anticodon: GCC |
| 450922 | 451010 | + | 89 | 81427616 | LSAt09 | - | Anticodon: TAA |
| 451022 | 451095 | + | 74 | 81427616 | LSAt10 | - | Anticodon: ACG |
| 451101 | 451174 | + | 74 | 81427616 | LSAt11 | - | Anticodon: TGG |
| 451212 | 451285 | + | 74 | 81427616 | LSAt12 | - | Anticodon: CAT |
| 451302 | 451375 | + | 74 | 81427616 | LSAt13 | - | Anticodon: CAT |
| 451421 | 451494 | + | 74 | 81427616 | LSAt14 | - | Anticodon: CAT |
| 451497 | 451570 | + | 74 | 81427616 | LSAt15 | - | Anticodon: GTC |
| 451580 | 451652 | + | 73 | 81427616 | LSAt16 | - | Anticodon: GAA |
| 451665 | 451735 | + | 71 | 81427616 | LSAt17 | - | Anticodon: TCC |
| 451742 | 451815 | + | 74 | 81427616 | LSAt18 | - | Anticodon: GAT |
| 451830 | 451917 | + | 88 | 81427616 | LSAt19 | - | Anticodon: GCT |
| 451926 | 451997 | + | 72 | 81427616 | LSAt20 | - | Anticodon: TTC |
| 452031 | 452114 | + | 84 | 81427616 | LSAt21 | - | Anticodon: TGA |
| 452128 | 452201 | + | 74 | 81427616 | LSAt22 | - | Anticodon: CAT |
| 452204 | 452277 | + | 74 | 81427616 | LSAt23 | - | Anticodon: GTC |
| 452287 | 452359 | + | 73 | 81427616 | LSAt24 | - | Anticodon: GAA |
| 452365 | 452445 | + | 81 | 81427616 | LSAt25 | - | Anticodon: GTA |
| 452453 | 452523 | + | 71 | 81427616 | LSAt26 | - | Anticodon: CCA |
| 452583 | 452655 | + | 73 | 81427616 | LSAt27 | - | Anticodon: GTG |
| 452665 | 452736 | + | 72 | 81427616 | LSAt28 | - | Anticodon: TTG |
| 452764 | 452834 | + | 71 | 81427616 | LSAt29 | - | Anticodon: GCA |
| 452872 | 452955 | + | 84 | 81427616 | LSAt30 | - | Anticodon: CAA |
| 478891 | 480461 | + | 1571 | 81427616 | LSAr07 | - | 16S ribosomal RNA |
| 480685 | 483603 | + | 2919 | 81427616 | LSAr08 | - | 23S ribosomal RNA |
| 483696 | 483774 | + | 79 | 81427616 | LSAr09 | - | 5S ribosomal RNA |
| 483816 | 483888 | + | 73 | 81427616 | LSAt31 | - | Anticodon: GTT |
| 483900 | 483989 | + | 90 | 81427616 | LSAt32 | - | Anticodon: GGA |
| 484007 | 484078 | + | 72 | 81427616 | LSAt33 | - | Anticodon: TTC |
| 484084 | 484156 | + | 73 | 81427616 | LSAt34 | - | Anticodon: TAC |
| 484169 | 484242 | + | 74 | 81427616 | LSAt35 | - | Anticodon: GTC |
| 605263 | 605334 | - | 72 | 81427616 | LSAt36 | - | Anticodon: CCG |
| 643528 | 643601 | - | 74 | 81427616 | LSAt37 | - | Anticodon: TCT |
| 723096 | 723183 | + | 88 | 81427616 | LSAt38 | - | Anticodon: CGA |
| 819576 | 819659 | + | 84 | 81427616 | LSAt39 | - | Anticodon: TGA |
| 1147448 | 1147520 | - | 73 | 81427616 | LSAt40 | - | Anticodon: CTC |
| 1147936 | 1148008 | + | 73 | 81427616 | LSAt41 | - | Anticodon: CTG |
| 1282894 | 1282969 | + | 76 | 81427616 | LSAt42 | - | Anticodon: CGC |
| 1393639 | 1393712 | - | 74 | 81427616 | LSAt43 | - | Anticodon: CCC |
| 1400546 | 1400632 | - | 87 | 81427616 | LSAt44 | - | Anticodon: CAG |
| 1500671 | 1500744 | - | 74 | 81427616 | LSAt45 | - | Anticodon: CCT |
| 1535684 | 1535768 | - | 85 | 81427616 | LSAt46 | - | Anticodon: AAG |
| 1569085 | 1569156 | - | 72 | 81427616 | LSAt47 | - | Anticodon: TTG |
| 1569163 | 1569243 | - | 81 | 81427616 | LSAt48 | - | Anticodon: GTA |
| 1571949 | 1572024 | - | 76 | 81427616 | LSAt49 | - | Anticodon: CGT |
| 1572032 | 1572103 | - | 72 | 81427616 | LSAt50 | - | Anticodon: TTC |
| 1572148 | 1572220 | - | 73 | 81427616 | LSAt51 | - | Anticodon: GTT |
| 1572226 | 1572342 | - | 117 | 81427616 | LSAr10 | - | 5S ribosomal RNA |
| 1572433 | 1575351 | - | 2919 | 81427616 | LSAr11 | - | 23S ribosomal RNA |
| 1575575 | 1577145 | - | 1571 | 81427616 | LSAr12 | - | 16S ribosomal RNA |
| 1758161 | 1758234 | - | 74 | 81427616 | LSAt52 | - | Anticodon: CGG |
| 1758268 | 1758339 | - | 72 | 81427616 | LSAt53 | - | Anticodon: GCC |
| 1758366 | 1758439 | - | 74 | 81427616 | LSAt54 | - | Anticodon: TGG |
| 1758445 | 1758518 | - | 74 | 81427616 | LSAt55 | - | Anticodon: ACG |
| 1758530 | 1758618 | - | 89 | 81427616 | LSAt56 | - | Anticodon: TAA |
| 1758633 | 1758704 | - | 72 | 81427616 | LSAt57 | - | Anticodon: GCC |
| 1758712 | 1758784 | - | 73 | 81427616 | LSAt58 | - | Anticodon: TGT |
| 1758820 | 1758903 | - | 84 | 81427616 | LSAt59 | - | Anticodon: TAG |
| 1758926 | 1758998 | - | 73 | 81427616 | LSAt60 | - | Anticodon: TTT |
| 1759001 | 1759073 | - | 73 | 81427616 | LSAt61 | - | Anticodon: TAC |
| 1759084 | 1759200 | - | 117 | 81427616 | LSAr13 | - | 5S ribosomal RNA |
| 1759292 | 1762210 | - | 2919 | 81427616 | LSAr14 | - | 23S ribosomal RNA |
| 1762383 | 1762455 | - | 73 | 81427616 | LSAt62 | - | Anticodon: TGC |
| 1762482 | 1762555 | - | 74 | 81427616 | LSAt63 | - | Anticodon: GAT |
| 1762644 | 1763993 | - | 1350 | 81427616 | LSAr15 | - | 16S ribosomal RNA |
| 1863713 | 1863829 | - | 117 | 81427616 | LSAr16 | - | 5S ribosomal RNA |
| 1863921 | 1866839 | - | 2919 | 81427616 | LSAr17 | - | 23S ribosomal RNA |
| 1867063 | 1868633 | - | 1571 | 81427616 | LSAr18 | - | 16S ribosomal RNA |
| 1869130 | 1869246 | - | 117 | 81427616 | LSAr19 | - | 5S ribosomal RNA |
| 1869337 | 1872255 | - | 2919 | 81427616 | LSAr20 | - | 23S ribosomal RNA |
| 1872479 | 1873828 | - | 1350 | 81427616 | LSAr21 | - | 16S ribosomal RNA |