Геном прокариот/Материалы:NC 007604

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007604            2695903 bp    DNA     circular BCT 08-JUN-2007
   DEFINITION  Synechococcus elongatus PCC 7942, complete genome.
   ACCESSION   NC_007604
   VERSION     NC_007604.1  GI:81298811
   KEYWORDS    .
   SOURCE      Synechococcus elongatus PCC 7942
     ORGANISM  Synechococcus elongatus PCC 7942
               Bacteria; Cyanobacteria; Chroococcales; Synechococcus.
   REFERENCE   1  (bases 1 to 2695903)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 1 of Synechococcus elongatus PCC
               7942
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2695903)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-NOV-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2695903)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J.,
               Larimer,F., Land,M., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000100.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Susan Golden
               (sgolden@tamu.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-PGF
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
87725	87796	-	72	81298811	Synpcc7942_R0025	-	^{07 Asn tRNA}
121282	121352	+	71	81298811	Synpcc7942_R0026	-	^{19 Cys tRNA}
123940	124013	+	74	81298811	Synpcc7942_R0027	-	^{19 Cys tRNA}
166532	166608	+	77	81298811	Synpcc7942_R0028	-	^{16 Met tRNA}
219927	220000	+	74	81298811	Synpcc7942_R0029	-	^{03 Pro tRNA}
288160	288232	-	73	81298811	Synpcc7942_R0030	-	^{02 Ala tRNA}
424911	424984	-	74	81298811	Synpcc7942_R0031	-	^{11 Arg tRNA}
555218	555288	+	71	81298811	Synpcc7942_R0032	-	^{01 Gly tRNA}
568589	570078	+	1490	81298811	Synpcc7942_R0004	-	16S ribosomal RNA
570240	570316	+	77	81298811	Synpcc7942_R0033	-	^{14 Ile tRNA}
570347	570422	+	76	81298811	Synpcc7942_R0034	-	^{02 Ala tRNA}
570624	573501	+	2878	81298811	Synpcc7942_R0005	-	23S ribosomal RNA
573572	573686	+	115	81298811	Synpcc7942_R0006	-	5S ribosomal RNA
587716	587787	+	72	81298811	Synpcc7942_R0035	-	^{16 Met tRNA}
620372	620443	+	72	81298811	Synpcc7942_R0037	-	^{05 Gln tRNA}
673441	673512	+	72	81298811	Synpcc7942_R0038	-	^{13 Val tRNA}
709609	709692	-	84	81298811	Synpcc7942_R0039	-	^{15 Leu tRNA}
711226	711312	+	87	81298811	Synpcc7942_R0040	-	^{15 Leu tRNA}
908331	908402	+	72	81298811	Synpcc7942_R0041	-	^{12 Thr tRNA}
923151	923235	+	85	81298811	Synpcc7942_R0042	-	^{18 Tyr tRNA}
923243	923317	+	75	81298811	Synpcc7942_R0043	-	^{12 Thr tRNA}
989340	989730	-	391	81298811	Synpcc7942_R0017	-	tmRNA
1170702	1170775	-	74	81298811	Synpcc7942_R0044	-	^{03 Pro tRNA}
1174969	1175042	+	74	81298811	Synpcc7942_R0045	-	^{03 Pro tRNA}
1248477	1248551	-	75	81298811	Synpcc7942_R0046	-	^{13 Val tRNA}
1421238	1421319	-	82	81298811	Synpcc7942_R0048	-	^{15 Leu tRNA}
1496904	1496975	+	72	81298811	Synpcc7942_R0049	-	^{10 Lys tRNA}
1557246	1557317	+	72	81298811	Synpcc7942_R0053	-	^{13 Val tRNA}
1622798	1622869	-	72	81298811	Synpcc7942_R0001	-	^{01 Gly tRNA}
1712986	1713297	+	312	81298811	Synpcc7942_R0036	-	RNA component of RNaseP
2025281	2025365	+	85	81298811	Synpcc7942_R0002	-	^{08 Ser tRNA}
2085452	2085523	-	72	81298811	Synpcc7942_R0003	-	^{12 Thr tRNA}
2196083	2196155	+	73	81298811	Synpcc7942_R0007	-	^{04 Glu tRNA}
2281200	2281288	-	89	81298811	Synpcc7942_R0008	-	^{08 Ser tRNA}
2309655	2309726	-	72	81298811	Synpcc7942_R0009	-	^{01 Gly tRNA}
2318309	2318381	+	73	81298811	Synpcc7942_R0010	-	^{11 Arg tRNA}
2343582	2343657	+	76	81298811	Synpcc7942_R0011	-	^{11 Arg tRNA}
2379460	2379533	-	74	81298811	Synpcc7942_R0012	-	^{11 Arg tRNA}
2433493	2433568	+	76	81298811	Synpcc7942_R0013	-	^{09 His tRNA}
2447896	2447996	-	101	81298811	Synpcc7942_R0047	-	SRP RNA
2478513	2478585	+	73	81298811	Synpcc7942_R0014	-	^{17 Phe tRNA}
2513976	2514057	+	82	81298811	Synpcc7942_R0015	-	^{15 Leu tRNA}
2538396	2538482	+	87	81298811	Synpcc7942_R0016	-	^{08 Ser tRNA}
2596584	2596656	+	73	81298811	Synpcc7942_R0018	-	^{02 Ala tRNA}
2622812	2622884	+	73	81298811	Synpcc7942_R0019	-	^{20 Trp tRNA}
2623091	2623164	+	74	81298811	Synpcc7942_R0020	-	^{06 Asp tRNA}
2655235	2655349	-	115	81298811	Synpcc7942_R0050	-	5S ribosomal RNA
2655420	2658297	-	2878	81298811	Synpcc7942_R0051	-	23S ribosomal RNA
2658499	2658574	-	76	81298811	Synpcc7942_R0021	-	^{02 Ala tRNA}
2658605	2658681	-	77	81298811	Synpcc7942_R0022	-	^{14 Ile tRNA}
2658843	2660332	-	1490	81298811	Synpcc7942_R0052	-	16S ribosomal RNA
2666838	2666924	-	87	81298811	Synpcc7942_R0023	-	^{08 Ser tRNA}
2676606	2676678	-	73	81298811	Synpcc7942_R0024	-	^{16 Met tRNA}