Геном прокариот/Материалы:NC 007908
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Базовый уровень статей |
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LOCUS NC_007908 4712337 bp DNA circular BCT 18-MAY-2006
DEFINITION Rhodoferax ferrireducens T118, complete genome.
ACCESSION NC_007908
VERSION NC_007908.1 GI:89898822
KEYWORDS .
SOURCE Rhodoferax ferrireducens T118
ORGANISM Rhodoferax ferrireducens T118
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Comamonadaceae; Rhodoferax.
REFERENCE 1 (bases 1 to 4712337)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D.,
Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F.,
Land,M., Kyrpides,N., Ivanova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromosome of Rhodoferax ferrireducens DSM
15236
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4712337)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4712337)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D.,
Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F.,
Land,M., Kyrpides,N., Ivanova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (27-FEB-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000267.
URL -- http://www.jgi.doe.gov
Source DNA available from Derek Lovley (dlovley@microbio.umass.edu)
Bacteria available from DSMZ: DSM 15236
Contacts: Derek Lovley (dlovley@microbio.umass.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
править| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 207459 | 207534 | + | 76 | 89898822 | Rfer_R0001 | - | 11 Arg tRNA |
| 378824 | 378899 | - | 76 | 89898822 | Rfer_R0002 | - | 02 Ala tRNA |
| 659339 | 659412 | + | 74 | 89898822 | Rfer_R0003 | - | 01 Gly tRNA |
| 1361114 | 1361190 | - | 77 | 89898822 | Rfer_R0004 | - | 03 Pro tRNA |
| 1447387 | 1447463 | + | 77 | 89898822 | Rfer_R0005 | - | 03 Pro tRNA |
| 1457493 | 1457585 | + | 93 | 89898822 | Rfer_R0006 | - | 08 Ser tRNA |
| 1524587 | 1524674 | - | 88 | 89898822 | Rfer_R0007 | - | 08 Ser tRNA |
| 1564522 | 1564597 | - | 76 | 89898822 | Rfer_R0008 | - | 07 Asn tRNA |
| 1566744 | 1566845 | - | 102 | 89898822 | Rfer_R0009 | - | SRP RNA; RNA component of signal recognition particle |
| 1587794 | 1587870 | + | 77 | 89898822 | Rfer_R0010 | - | 11 Arg tRNA |
| 1606605 | 1606689 | + | 85 | 89898822 | Rfer_R0011 | - | 15 Leu tRNA |
| 1675287 | 1675373 | + | 87 | 89898822 | Rfer_R0012 | - | 15 Leu tRNA |
| 1681424 | 1681499 | + | 76 | 89898822 | Rfer_R0013 | - | 01 Gly tRNA |
| 1681552 | 1681625 | + | 74 | 89898822 | Rfer_R0014 | - | 19 Cys tRNA |
| 1681638 | 1681730 | + | 93 | 89898822 | Rfer_R0015 | - | 15 Leu tRNA |
| 1701944 | 1702020 | - | 77 | 89898822 | Rfer_R0016 | - | 16 Met tRNA |
| 1728628 | 1728702 | + | 75 | 89898822 | Rfer_R0017 | - | 11 Arg tRNA |
| 1791571 | 1791647 | + | 77 | 89898822 | Rfer_R0018 | - | 05 Gln tRNA |
| 1837798 | 1837900 | + | 103 | 89898822 | Rfer_R0019 | - | |
| 2121364 | 2121448 | - | 85 | 89898822 | Rfer_R0020 | - | 15 Leu tRNA |
| 2296385 | 2296474 | + | 90 | 89898822 | Rfer_R0021 | - | 08 Ser tRNA |
| 2381770 | 2381844 | + | 75 | 89898822 | Rfer_R0022 | - | 13 Val tRNA |
| 2462673 | 2462748 | + | 76 | 89898822 | Rfer_R0023 | - | 13 Val tRNA |
| 2464779 | 2464854 | + | 76 | 89898822 | Rfer_R0024 | - | 09 His tRNA |
| 2583007 | 2583083 | + | 77 | 89898822 | Rfer_R0025 | - | 03 Pro tRNA |
| 2619696 | 2619780 | + | 85 | 89898822 | Rfer_R0026 | - | 15 Leu tRNA |
| 2702935 | 2703011 | - | 77 | 89898822 | Rfer_R0027 | - | 13 Val tRNA |
| 2710968 | 2711076 | + | 109 | 89898822 | Rfer_R0028 | - | |
| 2718676 | 2718770 | - | 95 | 89898822 | Rfer_R0029 | - | |
| 2951325 | 2951401 | - | 77 | 89898822 | Rfer_R0030 | - | 06 Asp tRNA |
| 2951495 | 2951570 | - | 76 | 89898822 | Rfer_R0031 | - | 04 Glu tRNA |
| 2951629 | 2951704 | - | 76 | 89898822 | Rfer_R0032 | - | 02 Ala tRNA |
| 2977648 | 2977723 | + | 76 | 89898822 | Rfer_R0033 | - | 12 Thr tRNA |
| 3114440 | 3114516 | - | 77 | 89898822 | Rfer_R0034 | - | 11 Arg tRNA |
| 3122337 | 3122412 | + | 76 | 89898822 | Rfer_R0035 | - | 10 Lys tRNA |
| 3129592 | 3129947 | + | 356 | 89898822 | Rfer_R0036 | - | tmRNA |
| 3275036 | 3275111 | + | 76 | 89898822 | Rfer_R0037 | - | 12 Thr tRNA |
| 3329631 | 3329729 | + | 99 | 89898822 | Rfer_R0038 | - | |
| 3329757 | 3329892 | + | 136 | 89898822 | Rfer_R0039 | - | |
| 3355003 | 3355078 | + | 76 | 89898822 | Rfer_R0040 | - | 10 Lys tRNA |
| 3591461 | 3591548 | + | 88 | 89898822 | Rfer_R0041 | - | 08 Ser tRNA |
| 3599151 | 3599248 | - | 98 | 89898822 | Rfer_R0042 | - | |
| 3850851 | 3851131 | - | 281 | 89898822 | Rfer_R0043 | - | RNA component of RNaseP |
| 3992057 | 3992132 | - | 76 | 89898822 | Rfer_R0044 | - | 17 Phe tRNA |
| 4009554 | 4009629 | - | 76 | 89898822 | Rfer_R0045 | - | 20 Trp tRNA |
| 4010877 | 4010951 | - | 75 | 89898822 | Rfer_R0046 | - | 12 Thr tRNA |
| 4011013 | 4011086 | - | 74 | 89898822 | Rfer_R0047 | - | 01 Gly tRNA |
| 4011175 | 4011260 | - | 86 | 89898822 | Rfer_R0048 | - | 18 Tyr tRNA |
| 4108877 | 4108989 | - | 113 | 89898822 | Rfer_R0049 | - | 5S ribosomal RNA |
| 4109136 | 4112015 | - | 2880 | 89898822 | Rfer_R0050 | - | 23S ribosomal RNA |
| 4112364 | 4112439 | - | 76 | 89898822 | Rfer_R0051 | - | 02 Ala tRNA |
| 4112466 | 4112542 | - | 77 | 89898822 | Rfer_R0052 | - | 14 Ile tRNA |
| 4112640 | 4114170 | - | 1531 | 89898822 | Rfer_R0053 | - | 16S ribosomal RNA |
| 4114521 | 4114633 | - | 113 | 89898822 | Rfer_R0054 | - | 5S ribosomal RNA |
| 4114780 | 4117659 | - | 2880 | 89898822 | Rfer_R0055 | - | 23S ribosomal RNA |
| 4118008 | 4118083 | - | 76 | 89898822 | Rfer_R0056 | - | 02 Ala tRNA |
| 4118110 | 4118186 | - | 77 | 89898822 | Rfer_R0057 | - | 14 Ile tRNA |
| 4118284 | 4119814 | - | 1531 | 89898822 | Rfer_R0058 | - | 16S ribosomal RNA |
| 4691645 | 4691721 | - | 77 | 89898822 | Rfer_R0059 | - | 16 Met tRNA |