Геном прокариот/Материалы:NC 007951

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007951            4895836 bp    DNA     circular BCT 29-AUG-2006
   DEFINITION  Burkholderia xenovorans LB400 chromosome 1, complete sequence.
   ACCESSION   NC_007951
   VERSION     NC_007951.1  GI:91781384
   KEYWORDS    .
   SOURCE      Burkholderia xenovorans LB400
     ORGANISM  Burkholderia xenovorans LB400
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Burkholderia.
   REFERENCE   1  (bases 1 to 4895836)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome 1 of Burkholderia xenovorans LB400
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4895836)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4895836)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (13-MAR-2006) US DOE Joint Genome Instiute, 2800 Mitchell
               Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000270.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2351477
               Source DNA and bacteria available from Jim Tiedje
               (tiedjej@pilot.msu.edu)
               Contacts: Jim Tiedje (tiedjej@pilot.msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
50862	50937	-	76	91781384	Bxe_AR0017	-	^{10 Lys tRNA}
71102	71177	+	76	91781384	Bxe_AR0018	-	^{17 Phe tRNA}
178219	178294	+	76	91781384	Bxe_AR0019	-	^{02 Ala tRNA}
364217	364293	-	77	91781384	Bxe_AR0020	-	^{05 Gln tRNA}
606588	606663	-	76	91781384	Bxe_AR0021	-	^{10 Lys tRNA}
1138430	1138519	+	90	91781384	Bxe_AR0022	-	^{08 Ser tRNA}
1238741	1238815	-	75	91781384	Bxe_AR0023	-	^{11 Arg tRNA}
1382094	1382178	+	85	91781384	Bxe_AR0024	-	^{15 Leu tRNA}
1425593	1427082	+	1490	91781384	Bxe_AR0025	-	16S ribosomal RNA
1427154	1427230	+	77	91781384	Bxe_AR0026	-	^{14 Ile tRNA}
1427312	1427387	+	76	91781384	Bxe_AR0027	-	^{02 Ala tRNA}
1427682	1430563	+	2882	91781384	Bxe_AR0028	-	23S ribosomal RNA
1430738	1430851	+	114	91781384	Bxe_AR0029	-	5S ribosomal RNA
1498715	1498805	+	91	91781384	Bxe_AR0030	-	^{08 Ser tRNA}
2069262	2069334	+	73	91781384	Bxe_AR0031	-	^{10 Lys tRNA}
2120063	2120149	-	87	91781384	Bxe_AR0032	-	^{15 Leu tRNA}
2120391	2120477	-	87	91781384	Bxe_AR0033	-	^{15 Leu tRNA}
2166852	2166928	-	77	91781384	Bxe_AR0034	-	^{16 Met tRNA}
2180200	2180275	-	76	91781384	Bxe_AR0035	-	^{09 His tRNA}
2212587	2212659	+	73	91781384	Bxe_AR0036	-	^{03 Pro tRNA}
2296886	2296988	+	103	91781384	Bxe_AR0037	-	SRP RNA; RNA component of signal recognition particle
2367210	2367296	+	87	91781384	Bxe_AR0038	-	^{15 Leu tRNA}
2378837	2378912	+	76	91781384	Bxe_AR0039	-	^{13 Val tRNA}
2378960	2379036	+	77	91781384	Bxe_AR0040	-	^{06 Asp tRNA}
3094406	3094482	-	77	91781384	Bxe_AR0041	-	^{06 Asp tRNA}
3094575	3094650	-	76	91781384	Bxe_AR0042	-	^{04 Glu tRNA}
3094712	3094788	-	77	91781384	Bxe_AR0043	-	^{06 Asp tRNA}
3094892	3094967	-	76	91781384	Bxe_AR0044	-	^{04 Glu tRNA}
3095133	3095208	-	76	91781384	Bxe_AR0045	-	^{02 Ala tRNA}
3108646	3108739	-	94	91781384	Bxe_AR0046	-	^{08 Ser tRNA}
3228193	3228269	-	77	91781384	Bxe_AR0047	-	^{16 Met tRNA}
3294975	3295059	-	85	91781384	Bxe_AR0048	-	^{15 Leu tRNA}
3394553	3394629	-	77	91781384	Bxe_AR0049	-	^{03 Pro tRNA}
3402976	3403052	-	77	91781384	Bxe_AR0050	-	^{13 Val tRNA}
3492237	3492310	-	74	91781384	Bxe_AR0051	-	^{11 Arg tRNA}
3501367	3501443	+	77	91781384	Bxe_AR0052	-	^{03 Pro tRNA}
3508757	3508828	+	72	91781384	Bxe_AR0053	-	Xaa tRNA
3540795	3540869	+	75	91781384	Bxe_AR0054	-	^{13 Val tRNA}
3559103	3559176	-	74	91781384	Bxe_AR0055	-	^{19 Cys tRNA}
3559282	3559357	-	76	91781384	Bxe_AR0056	-	^{01 Gly tRNA}
3682253	3682328	-	76	91781384	Bxe_AR0057	-	^{01 Gly tRNA}
3730447	3730522	+	76	91781384	Bxe_AR0058	-	^{07 Asn tRNA}
3730600	3730675	+	76	91781384	Bxe_AR0059	-	^{07 Asn tRNA}
3815315	3815684	+	370	91781384	Bxe_AR0060	-	tmRNA
3874543	3874618	+	76	91781384	Bxe_AR0061	-	^{12 Thr tRNA}
3884542	3884618	+	77	91781384	Bxe_AR0062	-	^{11 Arg tRNA}
3884697	3884773	+	77	91781384	Bxe_AR0063	-	^{11 Arg tRNA}
3892724	3892813	+	90	91781384	Bxe_AR0064	-	^{08 Ser tRNA}
3913262	3913335	+	74	91781384	Bxe_AR0065	-	^{01 Gly tRNA}
3932680	3932764	+	85	91781384	Bxe_AR0066	-	^{15 Leu tRNA}
4147251	4147327	+	77	91781384	Bxe_AR0067	-	^{16 Met tRNA}
4209812	4210161	-	350	91781384	Bxe_AR0068	-	RNA component of RNaseP
4320544	4320620	+	77	91781384	Bxe_AR0069	-	^{03 Pro tRNA}
4361742	4361855	-	114	91781384	Bxe_AR0070	-	5S ribosomal RNA
4362031	4364912	-	2882	91781384	Bxe_AR0071	-	23S ribosomal RNA
4365207	4365282	-	76	91781384	Bxe_AR0072	-	^{02 Ala tRNA}
4365364	4365440	-	77	91781384	Bxe_AR0073	-	^{14 Ile tRNA}
4365513	4367002	-	1490	91781384	Bxe_AR0074	-	16S ribosomal RNA
4423130	4423205	-	76	91781384	Bxe_AR0075	-	^{12 Thr tRNA}
4533929	4534004	-	76	91781384	Bxe_AR0076	-	^{20 Trp tRNA}
4535323	4535397	-	75	91781384	Bxe_AR0077	-	^{12 Thr tRNA}
4535414	4535487	-	74	91781384	Bxe_AR0078	-	^{01 Gly tRNA}
4535530	4535615	-	86	91781384	Bxe_AR0079	-	^{18 Tyr tRNA}
4535773	4535886	-	114	91781384	Bxe_AR0080	-	5S ribosomal RNA
4536062	4538943	-	2882	91781384	Bxe_AR0081	-	23S ribosomal RNA
4539238	4539313	-	76	91781384	Bxe_AR0082	-	^{02 Ala tRNA}
4539395	4539471	-	77	91781384	Bxe_AR0083	-	^{14 Ile tRNA}
4539544	4541033	-	1490	91781384	Bxe_AR0084	-	16S ribosomal RNA
4773429	4773504	-	76	91781384	Bxe_AR0085	-	^{11 Arg tRNA}