Геном прокариот/Материалы:NC 007964

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007964            4406967 bp    DNA     circular BCT 17-APR-2006
   DEFINITION  Nitrobacter hamburgensis X14, complete genome.
   ACCESSION   NC_007964
   VERSION     NC_007964.1  GI:92115633
   KEYWORDS    .
   SOURCE      Nitrobacter hamburgensis X14
     ORGANISM  Nitrobacter hamburgensis X14
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Nitrobacter.
   REFERENCE   1  (bases 1 to 4406967)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ward,B., Arp,D.,
               Klotz,M., Stein,L., O'Mullan,G., Starkenburg,S., Sayavedra,L.,
               Poret-Peterson,A.T., Gentry,M.E., Bruce,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Nitrobacter hamburgensis X14
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4406967)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (17-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4406967)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Kyrpides,N., Ivanova,N., Ward,B., Arp,D., Klotz,M.,
               Stein,L., O'Mullan,G., Starkenburg,S., Sayavedra,L.,
               Poret-Peterson,A.T., Gentry,M.E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (28-MAR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000319.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634489
               Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu)
               Contacts: Dan Arp (arpd@bcc.orst.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
95235	95309	-	75	92115633	Nham_R0001	-	^{01 Gly tRNA}
188039	188114	+	76	92115633	Nham_R0002	-	^{02 Ala tRNA}
202647	202733	-	87	92115633	Nham_R0003	-	^{15 Leu tRNA}
236858	236931	-	74	92115633	Nham_R0004	-	^{01 Gly tRNA}
315665	315739	-	75	92115633	Nham_R0005	-	^{12 Thr tRNA}
324825	324900	+	76	92115633	Nham_R0006	-	^{17 Phe tRNA}
511488	511592	+	105	92115633	Nham_R0007	-	SRP RNA; RNA component of signal recognition particle
566183	566259	+	77	92115633	Nham_R0008	-	^{11 Arg tRNA}
567886	567975	-	90	92115633	Nham_R0009	-	^{08 Ser tRNA}
627348	627423	+	76	92115633	Nham_R0010	-	^{12 Thr tRNA}
660095	660171	-	77	92115633	Nham_R0011	-	^{03 Pro tRNA}
668215	668290	-	76	92115633	Nham_R0012	-	^{02 Ala tRNA}
723627	725115	+	1489	92115633	Nham_R0013	-	16S ribosomal RNA
725322	725398	+	77	92115633	Nham_R0014	-	^{14 Ile tRNA}
725431	725506	+	76	92115633	Nham_R0015	-	^{02 Ala tRNA}
725920	728782	+	2863	92115633	Nham_R0016	-	23S ribosomal RNA
728859	728973	+	115	92115633	Nham_R0017	-	5S ribosomal RNA
771213	771289	+	77	92115633	Nham_R0018	-	^{16 Met tRNA}
865255	865329	+	75	92115633	Nham_R0019	-	^{05 Gln tRNA}
1295042	1295116	+	75	92115633	Nham_R0020	-	^{13 Val tRNA}
1412851	1412927	+	77	92115633	Nham_R0021	-	^{09 His tRNA}
1713473	1713546	-	74	92115633	Nham_R0022	-	^{05 Gln tRNA}
1731511	1731586	+	76	92115633	Nham_R0023	-	^{20 Trp tRNA}
1792083	1792160	+	78	92115633	Nham_R0024	-	^{03 Pro tRNA}
1796622	1796694	-	73	92115633	Nham_R0025	-	Xaa tRNA
1820749	1820837	-	89	92115633	Nham_R0026	-
1820838	1820941	-	104	92115633	Nham_R0027	-
1978594	1978669	-	76	92115633	Nham_R0028	-	^{10 Lys tRNA}
1988699	1988773	-	75	92115633	Nham_R0029	-	^{07 Asn tRNA}
2240909	2240998	+	90	92115633	Nham_R0030	-	^{08 Ser tRNA}
2285661	2285734	-	74	92115633	Nham_R0031	-	^{19 Cys tRNA}
2317498	2317574	+	77	92115633	Nham_R0032	-	^{11 Arg tRNA}
2382701	2382777	-	77	92115633	Nham_R0033	-	^{03 Pro tRNA}
2386826	2386900	+	75	92115633	Nham_R0034	-	^{04 Glu tRNA}
2402366	2402450	-	85	92115633	Nham_R0035	-	^{15 Leu tRNA}
2414309	2414385	+	77	92115633	Nham_R0036	-	^{11 Arg tRNA}
2471611	2471687	-	77	92115633	Nham_R0037	-	^{06 Asp tRNA}
2475605	2475681	-	77	92115633	Nham_R0038	-	^{13 Val tRNA}
2482828	2482912	-	85	92115633	Nham_R0039	-	^{15 Leu tRNA}
2521326	2521419	+	94	92115633	Nham_R0040	-	^{08 Ser tRNA}
2750455	2750528	-	74	92115633	Nham_R0041	-	^{01 Gly tRNA}
2762140	2762225	-	86	92115633	Nham_R0042	-	^{18 Tyr tRNA}
2765240	2765314	+	75	92115633	Nham_R0043	-	^{12 Thr tRNA}
2845541	2845629	-	89	92115633	Nham_R0044	-	^{15 Leu tRNA}
2878648	2878845	+	198	92115633	Nham_R0045	-
2989953	2990028	-	76	92115633	Nham_R0046	-	^{10 Lys tRNA}
3009412	3009747	+	336	92115633	Nham_R0047	-	tmRNA
3149021	3149095	-	75	92115633	Nham_R0048	-	^{04 Glu tRNA}
3167952	3168026	+	75	92115633	Nham_R0049	-	Xaa tRNA
3168336	3168408	-	73	92115633	Nham_R0050	-	Xaa tRNA
3168513	3168587	+	75	92115633	Nham_R0051	-	Xaa tRNA
3179513	3179867	+	355	92115633	Nham_R0052	-	RNA component of RNaseP
3185661	3185796	+	136	92115633	Nham_R0053	-
3696554	3696631	+	78	92115633	Nham_R0054	-	Xaa tRNA
3702623	3702698	-	76	92115633	Nham_R0055	-	^{16 Met tRNA}
3722103	3722177	+	75	92115633	Nham_R0056	-	^{13 Val tRNA}
3786754	3786830	-	77	92115633	Nham_R0057	-	^{16 Met tRNA}
3844879	3844963	+	85	92115633	Nham_R0058	-	^{15 Leu tRNA}
3982481	3982570	+	90	92115633	Nham_R0059	-	^{08 Ser tRNA}
4032764	4032968	-	205	92115633	Nham_R0060	-
4033871	4034093	+	223	92115633	Nham_R0061	-
4078903	4078979	+	77	92115633	Nham_R0062	-	^{11 Arg tRNA}
4110750	4110955	-	206	92115633	Nham_R0063	-
4137138	4137208	-	71	92115633	Nham_R0064	-	^{03 Pro tRNA}
4373936	4374005	-	70	92115633	Nham_R0065	-	^{13 Val tRNA}
4377528	4377604	-	77	92115633	Nham_R0066	-	^{03 Pro tRNA}
4391773	4391849	+	77	92115633	Nham_R0067	-	^{03 Pro tRNA}
4401397	4401473	-	77	92115633	Nham_R0068	-	^{11 Arg tRNA}