Геном прокариот/Материалы:NC 008044

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008044            3200938 bp    DNA     circular BCT 24-MAY-2006
   DEFINITION  Silicibacter sp. TM1040, complete genome.
   ACCESSION   NC_008044
   VERSION     NC_008044.1  GI:99079841
   KEYWORDS    .
   SOURCE      Silicibacter sp. TM1040
     ORGANISM  Silicibacter sp. TM1040
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Silicibacter.
   REFERENCE   1  (bases 1 to 3200938)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Goodwin,L., Thompson,L.S.,
               Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Belas,R., Moran,M.A., Buchan,A., Gonzalez,J.M.,
               Schell,M.A., Sun,F. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Silicibacter sp. TM1040
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3200938)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-MAY-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3200938)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Goodwin,L., Thompson,L.S.,
               Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Belas,R., Moran,M.A., Buchan,A., Gonzalez,J.M.,
               Schell,M.A., Sun,F. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (11-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000377.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634501
               Source DNA and bacteria available from Mary Ann Moran
               (mmoran@uga.edu)
               Contacts: Mary Ann Moran (mmoran@uga.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional Comments:
               Re: Chromosome Location:3038240, unresolved hard GC stop; Finkit
               used with two different primers failed to go through this hard
               stop, hairpin not identified, therefore potentially missing bases
               here.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
133517	133591	-	75	99079841	TM1040_R0001	-	^{13 Val tRNA}
144962	146416	+	1455	99079841	TM1040_R0002	-	16S ribosomal RNA
146556	146632	+	77	99079841	TM1040_R0003	-	^{14 Ile tRNA}
146698	146773	+	76	99079841	TM1040_R0004	-	^{02 Ala tRNA}
147318	150161	+	2844	99079841	TM1040_R0005	-	23S ribosomal RNA
150399	150513	+	115	99079841	TM1040_R0006	-	5S ribosomal RNA
150565	150641	+	77	99079841	TM1040_R0007	-	^{16 Met tRNA}
185651	185750	+	100	99079841	TM1040_R0008	-	SRP RNA; RNA component of signal recognition particle
322763	322839	+	77	99079841	TM1040_R0009	-	^{11 Arg tRNA}
452000	452076	-	77	99079841	TM1040_R0010	-	^{16 Met tRNA}
572500	572574	+	75	99079841	TM1040_R0011	-	^{05 Gln tRNA}
832030	832104	+	75	99079841	TM1040_R0012	-	^{13 Val tRNA}
909925	910000	+	76	99079841	TM1040_R0013	-	^{13 Val tRNA}
910354	910430	+	77	99079841	TM1040_R0014	-	^{06 Asp tRNA}
910513	910589	+	77	99079841	TM1040_R0015	-	^{06 Asp tRNA}
910673	910749	+	77	99079841	TM1040_R0016	-	^{06 Asp tRNA}
972863	972939	-	77	99079841	TM1040_R0017	-	^{03 Pro tRNA}
1051685	1051759	-	75	99079841	TM1040_R0018	-	^{07 Asn tRNA}
1237578	1237654	+	77	99079841	TM1040_R0019	-	^{03 Pro tRNA}
1257137	1257222	+	86	99079841	TM1040_R0020	-	^{15 Leu tRNA}
1289648	1289737	-	90	99079841	TM1040_R0021	-	^{08 Ser tRNA}
1307059	1307135	-	77	99079841	TM1040_R0022	-	^{11 Arg tRNA}
1415927	1416011	-	85	99079841	TM1040_R0023	-	^{15 Leu tRNA}
1416226	1416299	+	74	99079841	TM1040_R0024	-	^{01 Gly tRNA}
1534030	1534119	-	90	99079841	TM1040_R0025	-	^{08 Ser tRNA}
1546191	1546526	+	336	99079841	TM1040_R0026	-	tmRNA
1579604	1579679	+	76	99079841	TM1040_R0027	-	^{16 Met tRNA}
1582218	1582292	+	75	99079841	TM1040_R0028	-	^{07 Asn tRNA}
1788222	1788305	-	84	99079841	TM1040_R0029	-	^{15 Leu tRNA}
1846712	1846785	-	74	99079841	TM1040_R0030	-	^{19 Cys tRNA}
1934839	1934912	-	74	99079841	TM1040_R0031	-	^{01 Gly tRNA}
2017485	2017717	-	233	99079841	TM1040_R0032	-	RNA component of RNaseP
2139444	2139518	+	75	99079841	TM1040_R0033	-	^{01 Gly tRNA}
2139710	2139784	+	75	99079841	TM1040_R0034	-	^{01 Gly tRNA}
2139963	2140037	+	75	99079841	TM1040_R0035	-	^{01 Gly tRNA}
2152949	2153032	-	84	99079841	TM1040_R0036	-	Xaa tRNA
2156715	2156837	+	123	99079841	TM1040_R0037	-
2225464	2225540	-	77	99079841	TM1040_R0038	-	^{09 His tRNA}
2277500	2277574	+	75	99079841	TM1040_R0039	-	^{04 Glu tRNA}
2277789	2277863	+	75	99079841	TM1040_R0040	-	^{04 Glu tRNA}
2517265	2517340	-	76	99079841	TM1040_R0041	-
2517342	2517447	-	106	99079841	TM1040_R0042	-
2575693	2575768	+	76	99079841	TM1040_R0043	-	^{20 Trp tRNA}
2576175	2576264	+	90	99079841	TM1040_R0044	-	^{08 Ser tRNA}
2638185	2638319	+	135	99079841	TM1040_R0045	-
2821104	2821181	-	78	99079841	TM1040_R0046	-	^{11 Arg tRNA}
2972614	2972689	-	76	99079841	TM1040_R0047	-	^{10 Lys tRNA}
2982627	2982731	-	105	99079841	TM1040_R0048	-
2984411	2984497	-	87	99079841	TM1040_R0049	-	^{15 Leu tRNA}
2984654	2984740	-	87	99079841	TM1040_R0050	-	^{15 Leu tRNA}
2994766	2994841	+	76	99079841	TM1040_R0051	-	^{12 Thr tRNA}