Геном прокариот/Материалы:NC 008148
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Базовый уровень статей |
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LOCUS NC_008148 3225748 bp DNA circular BCT 12-JUN-2006
DEFINITION Rubrobacter xylanophilus DSM 9941, complete genome.
ACCESSION NC_008148
VERSION NC_008148.1 GI:108802856
KEYWORDS .
SOURCE Rubrobacter xylanophilus DSM 9941
ORGANISM Rubrobacter xylanophilus DSM 9941
Bacteria; Actinobacteria; Rubrobacteridae; Rubrobacterales;
Rubrobacterineae; Rubrobacteraceae; Rubrobacter.
REFERENCE 1 (bases 1 to 3225748)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Lykidis,A., da Costa,M.S., Rainey,F.A., Empadinhas,N., Jolivet,E.,
Battista,J.R. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rubrobacter xylanophilus DSM 9941
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3225748)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3225748)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Lykidis,A., da Costa,M.S., Rainey,F.A., Empadinhas,N., Jolivet,E.,
Battista,J.R. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000386.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3436081
Source DNA available from John R. Battista (jbattis@lsu.edu)
Bacteria available from DSMZ: DSM 9941
Contacts: John R. Battista (jbattis@lsu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
править| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 11389 | 11749 | + | 361 | 108802856 | Rxyl_R0001 | - | RNaseP RNA |
| 15245 | 15317 | - | 73 | 108802856 | Rxyl_R0002 | - | 01 Gly tRNA |
| 30643 | 30726 | + | 84 | 108802856 | Rxyl_R0003 | - | 15 Leu tRNA |
| 298314 | 298455 | + | 142 | 108802856 | Rxyl_R0004 | - | |
| 371715 | 371785 | + | 71 | 108802856 | Rxyl_R0005 | - | 05 Gln tRNA |
| 619467 | 619540 | - | 74 | 108802856 | Rxyl_R0006 | - | 11 Arg tRNA |
| 663892 | 664074 | + | 183 | 108802856 | Rxyl_R0007 | - | |
| 780592 | 780681 | - | 90 | 108802856 | Rxyl_R0008 | - | 08 Ser tRNA |
| 881920 | 882031 | - | 112 | 108802856 | Rxyl_R0009 | - | |
| 934242 | 934315 | + | 74 | 108802856 | Rxyl_R0010 | - | 05 Gln tRNA |
| 955404 | 955477 | + | 74 | 108802856 | Rxyl_R0011 | - | 15 Leu tRNA |
| 1024685 | 1024758 | + | 74 | 108802856 | Rxyl_R0012 | - | 03 Pro tRNA |
| 1038628 | 1038702 | + | 75 | 108802856 | Rxyl_R0013 | - | 10 Lys tRNA |
| 1038703 | 1038775 | + | 73 | 108802856 | Rxyl_R0014 | - | 04 Glu tRNA |
| 1038792 | 1038863 | + | 72 | 108802856 | Rxyl_R0015 | - | 13 Val tRNA |
| 1040076 | 1040149 | + | 74 | 108802856 | Rxyl_R0016 | - | 06 Asp tRNA |
| 1040568 | 1040640 | + | 73 | 108802856 | Rxyl_R0017 | - | 17 Phe tRNA |
| 1121068 | 1121189 | + | 122 | 108802856 | Rxyl_R0018 | - | |
| 1324076 | 1324148 | + | 73 | 108802856 | Rxyl_R0019 | - | 01 Gly tRNA |
| 1324169 | 1324239 | + | 71 | 108802856 | Rxyl_R0020 | - | 19 Cys tRNA |
| 1324262 | 1324333 | + | 72 | 108802856 | Rxyl_R0021 | - | 13 Val tRNA |
| 1337366 | 1338878 | + | 1513 | 108802856 | Rxyl_R0022 | - | 16S ribosomal RNA |
| 1339144 | 1342143 | + | 3000 | 108802856 | Rxyl_R0023 | - | 23S ribosomal RNA |
| 1342229 | 1342345 | + | 117 | 108802856 | Rxyl_R0024 | - | 5S ribosomal RNA |
| 1391592 | 1391741 | + | 150 | 108802856 | Rxyl_R0025 | - | |
| 1521231 | 1521304 | - | 74 | 108802856 | Rxyl_R0026 | - | 16 Met tRNA |
| 1521307 | 1521381 | - | 75 | 108802856 | Rxyl_R0027 | - | 07 Asn tRNA |
| 1539823 | 1539895 | - | 73 | 108802856 | Rxyl_R0028 | - | 02 Ala tRNA |
| 1556071 | 1556154 | - | 84 | 108802856 | Rxyl_R0029 | - | 15 Leu tRNA |
| 1584674 | 1584746 | - | 73 | 108802856 | Rxyl_R0030 | - | 09 His tRNA |
| 1616352 | 1616424 | - | 73 | 108802856 | Rxyl_R0031 | - | 11 Arg tRNA |
| 1625329 | 1625399 | - | 71 | 108802856 | Rxyl_R0032 | - | 01 Gly tRNA |
| 1625420 | 1625494 | - | 75 | 108802856 | Rxyl_R0033 | - | 03 Pro tRNA |
| 1626431 | 1626790 | - | 360 | 108802856 | Rxyl_R0034 | - | tmRNA |
| 1947946 | 1948018 | - | 73 | 108802856 | Rxyl_R0035 | - | 12 Thr tRNA |
| 2002611 | 2002699 | - | 89 | 108802856 | Rxyl_R0036 | - | Sec tRNA |
| 2024178 | 2024265 | + | 88 | 108802856 | Rxyl_R0037 | - | 15 Leu tRNA |
| 2059938 | 2060021 | + | 84 | 108802856 | Rxyl_R0038 | - | 15 Leu tRNA |
| 2112145 | 2112255 | + | 111 | 108802856 | Rxyl_R0039 | - | |
| 2184005 | 2184077 | - | 73 | 108802856 | Rxyl_R0040 | - | 20 Trp tRNA |
| 2185578 | 2185651 | - | 74 | 108802856 | Rxyl_R0041 | - | 16 Met tRNA |
| 2185683 | 2185755 | - | 73 | 108802856 | Rxyl_R0042 | - | 12 Thr tRNA |
| 2185766 | 2185851 | - | 86 | 108802856 | Rxyl_R0043 | - | 18 Tyr tRNA |
| 2185936 | 2186007 | - | 72 | 108802856 | Rxyl_R0044 | - | 12 Thr tRNA |
| 2206288 | 2206361 | - | 74 | 108802856 | Rxyl_R0045 | - | 16 Met tRNA |
| 2228976 | 2229050 | + | 75 | 108802856 | Rxyl_R0046 | - | 13 Val tRNA |
| 2293628 | 2293700 | + | 73 | 108802856 | Rxyl_R0047 | - | 02 Ala tRNA |
| 2295938 | 2296043 | + | 106 | 108802856 | Rxyl_R0048 | - | |
| 2304069 | 2304141 | - | 73 | 108802856 | Rxyl_R0049 | - | 11 Arg tRNA |
| 2308212 | 2308285 | - | 74 | 108802856 | Rxyl_R0050 | - | 03 Pro tRNA |
| 2406044 | 2406137 | + | 94 | 108802856 | Rxyl_R0051 | - | |
| 2455474 | 2455546 | - | 73 | 108802856 | Rxyl_R0052 | - | 02 Ala tRNA |
| 2457560 | 2457662 | + | 103 | 108802856 | Rxyl_R0053 | - | SRP RNA; RNA component of signal recognition particle |
| 2476169 | 2476242 | - | 74 | 108802856 | Rxyl_R0054 | - | 14 Ile tRNA |
| 2484065 | 2484294 | + | 230 | 108802856 | Rxyl_R0055 | - | |
| 2590390 | 2590480 | - | 91 | 108802856 | Rxyl_R0056 | - | 08 Ser tRNA |
| 2605957 | 2606029 | + | 73 | 108802856 | Rxyl_R0057 | - | 11 Arg tRNA |
| 2661013 | 2661085 | + | 73 | 108802856 | Rxyl_R0058 | - | 10 Lys tRNA |
| 2670191 | 2670275 | - | 85 | 108802856 | Rxyl_R0059 | - | 08 Ser tRNA |
| 2803867 | 2803972 | - | 106 | 108802856 | Rxyl_R0060 | - | |
| 2863858 | 2863933 | + | 76 | 108802856 | Rxyl_R0061 | - | 04 Glu tRNA |
| 2875142 | 2875231 | - | 90 | 108802856 | Rxyl_R0062 | - | 08 Ser tRNA |
| 3199881 | 3199953 | - | 73 | 108802856 | Rxyl_R0063 | - | |
| 3199954 | 3200053 | - | 100 | 108802856 | Rxyl_R0064 | - |