Геном прокариот/Материалы:NC 008254
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Базовый уровень статей |
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LOCUS NC_008254 4412446 bp DNA circular BCT 25-JUL-2006
DEFINITION Mesorhizobium sp. BNC1, complete genome.
ACCESSION NC_008254
VERSION NC_008254.1 GI:110632362
KEYWORDS .
SOURCE Mesorhizobium sp. BNC1
ORGANISM Mesorhizobium sp. BNC1
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Phyllobacteriaceae; Mesorhizobium.
REFERENCE 1 (bases 1 to 4412446)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Mesorhizobium sp. BNC1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4412446)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4412446)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N.L. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (20-JUN-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000390.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2662197
Source DNA and bacteria available from Harvey Bolton JR.
(harvey.bolton@pnl.gov)
Contacts: Harvey Bolton JR. (harvey.bolton@pnl.gov)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Other accessions for this project are: CP000389 (Plasmid1),
CP000391 (Plasmid2), CP000392 (Plasmid3).
COMPLETENESS: full length.
Расположение РНК
править| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 78675 | 78750 | - | 76 | 110632362 | Meso_R0001 | - | 12 Thr tRNA |
| 115580 | 115655 | - | 76 | 110632362 | Meso_R0002 | - | 17 Phe tRNA |
| 126698 | 126772 | - | 75 | 110632362 | Meso_R0003 | - | 01 Gly tRNA |
| 215234 | 215310 | + | 77 | 110632362 | Meso_R0004 | - | 09 His tRNA |
| 282215 | 282289 | + | 75 | 110632362 | Meso_R0005 | - | 12 Thr tRNA |
| 392373 | 392449 | - | 77 | 110632362 | Meso_R0006 | - | 11 Arg tRNA |
| 521127 | 521200 | + | 74 | 110632362 | Meso_R0007 | - | 05 Gln tRNA |
| 857350 | 857424 | + | 75 | 110632362 | Meso_R0008 | - | 05 Gln tRNA |
| 943686 | 943762 | - | 77 | 110632362 | Meso_R0009 | - | 03 Pro tRNA |
| 978231 | 978304 | - | 74 | 110632362 | Meso_R0010 | - | Xaa tRNA |
| 1034960 | 1035050 | - | 91 | 110632362 | Meso_R0011 | - | 08 Ser tRNA |
| 1118778 | 1118879 | - | 102 | 110632362 | Meso_R0012 | - | |
| 1118882 | 1118967 | - | 86 | 110632362 | Meso_R0013 | - | |
| 1148801 | 1148885 | + | 85 | 110632362 | Meso_R0014 | - | 15 Leu tRNA |
| 1190473 | 1190557 | + | 85 | 110632362 | Meso_R0015 | - | 18 Tyr tRNA |
| 1192249 | 1192322 | + | 74 | 110632362 | Meso_R0016 | - | 01 Gly tRNA |
| 1206280 | 1206356 | + | 77 | 110632362 | Meso_R0017 | - | 03 Pro tRNA |
| 1206735 | 1206811 | + | 77 | 110632362 | Meso_R0018 | - | 11 Arg tRNA |
| 1260786 | 1260862 | + | 77 | 110632362 | Meso_R0019 | - | 03 Pro tRNA |
| 1289535 | 1289606 | - | 72 | 110632362 | Meso_R0020 | - | Xaa tRNA |
| 1344915 | 1344991 | - | 77 | 110632362 | Meso_R0021 | - | 06 Asp tRNA |
| 1345179 | 1345254 | + | 76 | 110632362 | Meso_R0022 | - | 13 Val tRNA |
| 1434493 | 1434578 | + | 86 | 110632362 | Meso_R0023 | - | 15 Leu tRNA |
| 1555124 | 1555198 | - | 75 | 110632362 | Meso_R0024 | - | 13 Val tRNA |
| 1611506 | 1611581 | - | 76 | 110632362 | Meso_R0025 | - | 10 Lys tRNA |
| 1666234 | 1666309 | - | 76 | 110632362 | Meso_R0026 | - | 12 Thr tRNA |
| 1695913 | 1696002 | - | 90 | 110632362 | Meso_R0027 | - | 08 Ser tRNA |
| 1871878 | 1872209 | + | 332 | 110632362 | Meso_R0028 | - | tmRNA |
| 1894028 | 1894103 | + | 76 | 110632362 | Meso_R0029 | - | 10 Lys tRNA |
| 1916151 | 1916235 | - | 85 | 110632362 | Meso_R0030 | - | 15 Leu tRNA |
| 1960296 | 1960371 | - | 76 | 110632362 | Meso_R0031 | - | 20 Trp tRNA |
| 2017928 | 2018001 | - | 74 | 110632362 | Meso_R0032 | - | 19 Cys tRNA |
| 2038749 | 2038823 | - | 75 | 110632362 | Meso_R0033 | - | 07 Asn tRNA |
| 2063045 | 2063120 | + | 76 | 110632362 | Meso_R0034 | - | 04 Glu tRNA |
| 2165614 | 2165991 | - | 378 | 110632362 | Meso_R0035 | - | RNaseP RNA |
| 2215550 | 2215753 | + | 204 | 110632362 | Meso_R0036 | - | |
| 2226784 | 2226859 | + | 76 | 110632362 | Meso_R0037 | - | 16 Met tRNA |
| 2367051 | 2367127 | + | 77 | 110632362 | Meso_R0038 | - | 16 Met tRNA |
| 2734071 | 2734147 | - | 77 | 110632362 | Meso_R0039 | - | 16 Met tRNA |
| 2734276 | 2734390 | - | 115 | 110632362 | Meso_R0040 | - | 5S ribosomal RNA |
| 2734616 | 2737490 | - | 2875 | 110632362 | Meso_R0041 | - | 23S ribosomal RNA |
| 2737809 | 2737884 | - | 76 | 110632362 | Meso_R0042 | - | 02 Ala tRNA |
| 2737973 | 2738049 | - | 77 | 110632362 | Meso_R0043 | - | 14 Ile tRNA |
| 2738351 | 2739809 | - | 1459 | 110632362 | Meso_R0044 | - | 16S ribosomal RNA |
| 2750090 | 2750207 | + | 118 | 110632362 | Meso_R0045 | - | |
| 2937284 | 2937539 | - | 256 | 110632362 | Meso_R0046 | - | |
| 2941844 | 2942047 | - | 204 | 110632362 | Meso_R0047 | - | |
| 2997010 | 2997084 | + | 75 | 110632362 | Meso_R0048 | - | 13 Val tRNA |
| 3251583 | 3251659 | - | 77 | 110632362 | Meso_R0049 | - | 16 Met tRNA |
| 3251788 | 3251902 | - | 115 | 110632362 | Meso_R0050 | - | 23S ribosomal RNA |
| 3252128 | 3255002 | - | 2875 | 110632362 | Meso_R0051 | - | 23S ribosomal RNA |
| 3255321 | 3255396 | - | 76 | 110632362 | Meso_R0052 | - | 02 Ala tRNA |
| 3255485 | 3255561 | - | 77 | 110632362 | Meso_R0053 | - | 14 Ile tRNA |
| 3255863 | 3257321 | - | 1459 | 110632362 | Meso_R0054 | - | 16S ribosomal RNA |
| 3297018 | 3297102 | - | 85 | 110632362 | Meso_R0055 | - | 15 Leu tRNA |
| 3330912 | 3330988 | - | 77 | 110632362 | Meso_R0056 | - | 11 Arg tRNA |
| 3414950 | 3415025 | - | 76 | 110632362 | Meso_R0057 | - | 04 Glu tRNA |
| 3522172 | 3522274 | + | 103 | 110632362 | Meso_R0058 | - | |
| 3538363 | 3538437 | + | 75 | 110632362 | Meso_R0059 | - | 01 Gly tRNA |
| 3645605 | 3645680 | - | 76 | 110632362 | Meso_R0060 | - | 02 Ala tRNA |
| 3739038 | 3739127 | + | 90 | 110632362 | Meso_R0061 | - | 08 Ser tRNA |
| 3801882 | 3802094 | + | 213 | 110632362 | Meso_R0062 | - | |
| 3894684 | 3894759 | + | 76 | 110632362 | Meso_R0063 | - | 02 Ala tRNA |
| 4214708 | 4214784 | - | 77 | 110632362 | Meso_R0064 | - | 11 Arg tRNA |
| 4215011 | 4215075 | - | 65 | 110632362 | Meso_R0065 | - | 11 Arg tRNA |
| 4263184 | 4263268 | + | 85 | 110632362 | Meso_R0066 | - | 15 Leu tRNA |
| 4285444 | 4285533 | - | 90 | 110632362 | Meso_R0067 | - | 08 Ser tRNA |
| 4368582 | 4368685 | + | 104 | 110632362 | Meso_R0068 | - | SRP RNA |