Геном прокариот/Материалы:NC 008340

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008340            3275944 bp    DNA     circular BCT 14-SEP-2006
   DEFINITION  Alkalilimnicola ehrlichei MLHE-1, complete genome.
   ACCESSION   NC_008340
   VERSION     NC_008340.1  GI:114319166
   KEYWORDS    .
   SOURCE      Alkalilimnicola ehrlichei MLHE-1
     ORGANISM  Alkalilimnicola ehrlichei MLHE-1
               Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales;
               Ectothiorhodospiraceae; Alkalilimnicola.
   REFERENCE   1  (bases 1 to 3275944)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Oremland,R.S., Hoeft,S.E., Switzer-Blum,J., Kulp,T.,
               King,G., Tabita,R., Witte,B., Santini,J.M., Basu,P.,
               Hollibaugh,J.T., Xie,G., Stolz,J.F. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Alkalilimnicola ehrilichei MLHE-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3275944)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3275944)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Oremland,R.S., Hoeft,S.E., Switzer-Blum,J., Kulp,T.,
               King,G., Tabita,R., Witte,B., Santini,J.M., Basu,P.,
               Hollibaugh,J.T., Xie,G., Stolz,J.F. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (28-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000453.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000239
               Source DNA and bacteria available from John F. Stolz
               (stolz@duq.edu)
               Contacts: John F. Stolz (stolz@duq.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
97604	97677	+	74	114319166	Mlg_R0001	-	^{01 Gly tRNA}
274056	274131	-	76	114319166	Mlg_R0002	-	^{10 Lys tRNA}
324945	325019	+	75	114319166	Mlg_R0003	-	^{05 Gln tRNA}
368208	369739	+	1532	114319166	Mlg_R0004	-	16S ribosomal RNA
369818	369894	+	77	114319166	Mlg_R0005	-	^{14 Ile tRNA}
370065	370140	+	76	114319166	Mlg_R0006	-	^{02 Ala tRNA}
370366	373263	+	2898	114319166	Mlg_R0007	-	23S ribosomal RNA
373383	373499	+	117	114319166	Mlg_R0008	-	5S ribosomal RNA
488343	489874	+	1532	114319166	Mlg_R0009	-	16S ribosomal RNA
489953	490029	+	77	114319166	Mlg_R0010	-	^{14 Ile tRNA}
490201	490276	+	76	114319166	Mlg_R0011	-	^{02 Ala tRNA}
490502	493399	+	2898	114319166	Mlg_R0012	-	23S ribosomal RNA
493519	493635	+	117	114319166	Mlg_R0013	-	23S ribosomal RNA
497459	497534	+	76	114319166	Mlg_R0014	-	^{12 Thr tRNA}
499602	499686	+	85	114319166	Mlg_R0015	-	^{18 Tyr tRNA}
499726	499799	+	74	114319166	Mlg_R0016	-	^{01 Gly tRNA}
499821	499896	+	76	114319166	Mlg_R0017	-	^{12 Thr tRNA}
501217	501292	+	76	114319166	Mlg_R0018	-	^{20 Trp tRNA}
539503	539578	+	76	114319166	Mlg_R0019	-	^{12 Thr tRNA}
610119	610193	-	75	114319166	Mlg_R0020	-	^{04 Glu tRNA}
629590	629676	-	87	114319166	Mlg_R0021	-	^{15 Leu tRNA}
643969	644045	+	77	114319166	Mlg_R0022	-	^{03 Pro tRNA}
644094	644170	+	77	114319166	Mlg_R0023	-	^{11 Arg tRNA}
644208	644283	+	76	114319166	Mlg_R0024	-	^{09 His tRNA}
644290	644365	+	76	114319166	Mlg_R0025	-	^{10 Lys tRNA}
680908	680984	-	77	114319166	Mlg_R0026	-	^{11 Arg tRNA}
697040	697115	-	76	114319166	Mlg_R0027	-	^{02 Ala tRNA}
847408	847484	-	77	114319166	Mlg_R0028	-	^{03 Pro tRNA}
887757	887833	-	77	114319166	Mlg_R0029	-	^{13 Val tRNA}
943640	943716	-	77	114319166	Mlg_R0030	-	^{03 Pro tRNA}
1160083	1160172	+	90	114319166	Mlg_R0031	-	^{08 Ser tRNA}
1248149	1248224	-	76	114319166	Mlg_R0032	-	^{07 Asn tRNA}
1415805	1415889	-	85	114319166	Mlg_R0033	-	^{15 Leu tRNA}
1495246	1495336	+	91	114319166	Mlg_R0034	-	^{08 Ser tRNA}
1504176	1504251	+	76	114319166	Mlg_R0035	-	^{02 Ala tRNA}
1504380	1504455	+	76	114319166	Mlg_R0036	-	^{02 Ala tRNA}
1561501	1561576	+	76	114319166	Mlg_R0037	-	^{01 Gly tRNA}
1561705	1561778	+	74	114319166	Mlg_R0038	-	^{19 Cys tRNA}
1561830	1561915	+	86	114319166	Mlg_R0039	-	^{15 Leu tRNA}
1690014	1690090	-	77	114319166	Mlg_R0040	-	^{11 Arg tRNA}
1690137	1690228	-	92	114319166	Mlg_R0041	-	^{08 Ser tRNA}
1723912	1724029	-	118	114319166	Mlg_R0042	-	SRP RNA; RNA component of signal recognition particle
1774516	1774590	-	75	114319166	Mlg_R0043	-	^{13 Val tRNA}
1826410	1826497	+	88	114319166	Mlg_R0044	-	^{08 Ser tRNA}
1866616	1866691	-	76	114319166	Mlg_R0045	-	^{04 Glu tRNA}
2175428	2175783	+	356	114319166	Mlg_R0057	-	tmRNA
2219534	2219610	-	77	114319166	Mlg_R0046	-	^{16 Met tRNA}
2240609	2240693	-	85	114319166	Mlg_R0047	-	^{15 Leu tRNA}
2509761	2510058	-	298	114319166	Mlg_R0048	-	RNA component of RNaseP
2543728	2543801	-	74	114319166	Mlg_R0049	-	^{05 Gln tRNA}
2591270	2591346	-	77	114319166	Mlg_R0050	-	^{06 Asp tRNA}
2591360	2591435	-	76	114319166	Mlg_R0051	-	^{13 Val tRNA}
2598588	2598674	-	87	114319166	Mlg_R0052	-	^{15 Leu tRNA}
2859072	2859148	-	77	114319166	Mlg_R0053	-	^{16 Met tRNA}
3044231	3044307	-	77	114319166	Mlg_R0054	-	^{11 Arg tRNA}
3058396	3058471	+	76	114319166	Mlg_R0055	-	^{17 Phe tRNA}
3081898	3081974	-	77	114319166	Mlg_R0056	-	^{16 Met tRNA}