Геном прокариот/Материалы:NC 008435
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Базовый уровень статей |
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LOCUS NC_008435 5505494 bp DNA circular BCT 05-OCT-2006
DEFINITION Rhodopseudomonas palustris BisA53, complete genome.
ACCESSION NC_008435
VERSION NC_008435.1 GI:115522030
KEYWORDS .
SOURCE Rhodopseudomonas palustris BisA53
ORGANISM Rhodopseudomonas palustris BisA53
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Bradyrhizobiaceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 5505494)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Kim,E.,
Harwood,C.S., Oda,Y. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisA53
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5505494)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5505494)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Kim,E.,
Harwood,C.S., Oda,Y. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (07-SEP-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000463.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000371
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)Contacts: Caroline S. Harwood
(csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
править| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 53344 | 53419 | + | 76 | 115522030 | RPE_R0001 | - | 02 Ala tRNA |
| 70502 | 70577 | - | 76 | 115522030 | RPE_R0002 | - | 12 Thr tRNA |
| 131900 | 131976 | - | 77 | 115522030 | RPE_R0003 | - | 11 Arg tRNA |
| 452418 | 452492 | + | 75 | 115522030 | RPE_R0005 | - | 01 Gly tRNA |
| 487400 | 487475 | - | 76 | 115522030 | RPE_R0006 | - | 02 Ala tRNA |
| 553323 | 553409 | + | 87 | 115522030 | RPE_R0007 | - | 15 Leu tRNA |
| 609133 | 609222 | + | 90 | 115522030 | RPE_R0009 | - | 08 Ser tRNA |
| 712113 | 712189 | - | 77 | 115522030 | RPE_R0010 | - | 11 Arg tRNA |
| 787043 | 787117 | + | 75 | 115522030 | RPE_R0011 | - | 13 Val tRNA |
| 861574 | 863055 | + | 1482 | 115522030 | RPE_R0012 | - | 16S ribosomal RNA |
| 863295 | 863371 | + | 77 | 115522030 | RPE_R0013 | - | 14 Ile tRNA |
| 863419 | 863494 | + | 76 | 115522030 | RPE_R0014 | - | 02 Ala tRNA |
| 864126 | 866778 | + | 2653 | 115522030 | RPE_R0015 | - | 23S ribosomal RNA |
| 866937 | 867051 | + | 115 | 115522030 | RPE_R0016 | - | 5S ribosomal RNA |
| 879633 | 879717 | - | 85 | 115522030 | RPE_R0017 | - | 15 Leu tRNA |
| 911929 | 912003 | - | 75 | 115522030 | RPE_R0018 | - | 04 Glu tRNA |
| 1174349 | 1174425 | - | 77 | 115522030 | RPE_R0019 | - | 16 Met tRNA |
| 1217418 | 1217492 | + | 75 | 115522030 | RPE_R0020 | - | 05 Gln tRNA |
| 2309970 | 2310337 | - | 368 | 115522030 | RPE_R0024 | - | RNA component of RNaseP |
| 2367543 | 2367869 | - | 327 | 115522030 | RPE_R0025 | - | tmRNA |
| 2450931 | 2451006 | + | 76 | 115522030 | RPE_R0026 | - | 10 Lys tRNA |
| 2550824 | 2550910 | + | 87 | 115522030 | RPE_R0029 | - | 15 Leu tRNA |
| 2608855 | 2608929 | + | 75 | 115522030 | RPE_R0030 | - | 12 Thr tRNA |
| 2771100 | 2771184 | + | 85 | 115522030 | RPE_R0031 | - | 15 Leu tRNA |
| 2779292 | 2779368 | + | 77 | 115522030 | RPE_R0032 | - | 13 Val tRNA |
| 2786010 | 2786086 | + | 77 | 115522030 | RPE_R0033 | - | 06 Asp tRNA |
| 2999930 | 3000019 | - | 90 | 115522030 | RPE_R0034 | - | 08 Ser tRNA |
| 3012925 | 3013018 | + | 94 | 115522030 | RPE_R0035 | - | 08 Ser tRNA |
| 3052755 | 3052831 | - | 77 | 115522030 | RPE_R0036 | - | 11 Arg tRNA |
| 3086508 | 3086581 | + | 74 | 115522030 | RPE_R0037 | - | 19 Cys tRNA |
| 3088451 | 3088525 | - | 75 | 115522030 | RPE_R0038 | - | 07 Asn tRNA |
| 3122684 | 3122759 | - | 76 | 115522030 | RPE_R0039 | - | 10 Lys tRNA |
| 3181412 | 3181489 | - | 78 | 115522030 | RPE_R0040 | - | 03 Pro tRNA |
| 3270585 | 3270661 | - | 77 | 115522030 | RPE_R0041 | - | 03 Pro tRNA |
| 3274587 | 3274661 | + | 75 | 115522030 | RPE_R0042 | - | 04 Glu tRNA |
| 3487645 | 3487850 | - | 206 | 115522030 | RPE_R0043 | - | |
| 3829967 | 3830051 | - | 85 | 115522030 | RPE_R0047 | - | 15 Leu tRNA |
| 3841218 | 3841294 | + | 77 | 115522030 | RPE_R0048 | - | 11 Arg tRNA |
| 4031186 | 4031261 | - | 76 | 115522030 | RPE_R0049 | - | 20 Trp tRNA |
| 4093728 | 4093801 | - | 74 | 115522030 | RPE_R0050 | - | 01 Gly tRNA |
| 4110473 | 4110558 | - | 86 | 115522030 | RPE_R0051 | - | 18 Tyr tRNA |
| 4121694 | 4121767 | + | 74 | 115522030 | RPE_R0052 | - | 05 Gln tRNA |
| 4378927 | 4379003 | - | 77 | 115522030 | RPE_R0053 | - | 16 Met tRNA |
| 4548052 | 4548128 | - | 77 | 115522030 | RPE_R0054 | - | 09 His tRNA |
| 4785431 | 4785506 | - | 76 | 115522030 | RPE_R0055 | - | 16 Met tRNA |
| 4799089 | 4799163 | + | 75 | 115522030 | RPE_R0056 | - | 13 Val tRNA |
| 4850428 | 4850542 | - | 115 | 115522030 | RPE_R0059 | - | 5S ribosomal RNA |
| 4850692 | 4853344 | - | 2653 | 115522030 | RPE_R0060 | - | 23S ribosomal RNA |
| 4853944 | 4854019 | - | 76 | 115522030 | RPE_R0061 | - | 02 Ala tRNA |
| 4854067 | 4854143 | - | 77 | 115522030 | RPE_R0062 | - | 14 Ile tRNA |
| 4854382 | 4855863 | - | 1482 | 115522030 | RPE_R0063 | - | 16S ribosomal RNA |
| 4911104 | 4911180 | - | 77 | 115522030 | RPE_R0064 | - | 03 Pro tRNA |
| 5015656 | 5015731 | - | 76 | 115522030 | RPE_R0065 | - | 17 Phe tRNA |
| 5031742 | 5031816 | + | 75 | 115522030 | RPE_R0066 | - | 12 Thr tRNA |
| 5088333 | 5088422 | + | 90 | 115522030 | RPE_R0067 | - | 08 Ser tRNA |
| 5202363 | 5202439 | + | 77 | 115522030 | RPE_R0068 | - | 11 Arg tRNA |
| 5393342 | 5393446 | - | 105 | 115522030 | RPE_R0069 | - | SRP RNA; RNA component of signal recognition particle |
| 5450554 | 5450627 | - | 74 | 115522030 | RPE_R0070 | - | 01 Gly tRNA |