Геном прокариот/Материалы:NC 008497

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008497            2291220 bp    DNA     circular BCT 31-OCT-2006
   DEFINITION  Lactobacillus brevis ATCC 367, complete genome.
   ACCESSION   NC_008497
   VERSION     NC_008497.1  GI:116332681
   KEYWORDS    .
   SOURCE      Lactobacillus brevis ATCC 367
     ORGANISM  Lactobacillus brevis ATCC 367
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Lactobacillus.
   REFERENCE   1  (bases 1 to 2291220)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 2291220)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (21-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2291220)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000416.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662178
               Source DNA and bacteria available from Milton Saier
               (msaier@ucsd.edu)
               Bacteria also available from ATCC: ATCC 367
               Contacts: Milton Saier (msaier@ucsd.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)URL --
               http://www.fidelitysystems.com
               Project Information available at:
               http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
31448	31523	-	76	116332681	LVIS_t0028	-	^{10 Lys tRNA}
76914	76986	+	73	116332681	LVIS_t0073	-	^{04 Glu tRNA}
76996	77067	+	72	116332681	LVIS_t0074	-	^{05 Gln tRNA}
86149	87711	+	1563	116332681	LVIS_r0082	-	16S ribosomal RNA
87928	90845	+	2918	116332681	LVIS_r0083	-	23S ribosomal RNA
90914	91032	+	119	116332681	LVIS_r0084	-	5S ribosomal RNA
453214	454776	+	1563	116332681	LVIS_r0425	-	16S ribosomal RNA
454993	457910	+	2918	116332681	LVIS_r0426	-	23S ribosomal RNA
457979	458097	+	119	116332681	LVIS_r0427	-	5S ribosomal RNA
458170	458242	+	73	116332681	LVIS_t0428	-	^{12 Thr tRNA}
562993	564555	+	1563	116332681	LVIS_r0526	-	16S ribosomal RNA
564635	564709	+	75	116332681	LVIS_t0527	-	^{14 Ile tRNA}
564732	564804	+	73	116332681	LVIS_t0528	-	^{02 Ala tRNA}
564974	567891	+	2918	116332681	LVIS_r0529	-	23S ribosomal RNA
567960	568078	+	119	116332681	LVIS_r0530	-	5S ribosomal RNA
568083	568155	+	73	116332681	LVIS_t0531	-	^{07 Asn tRNA}
568187	568262	+	76	116332681	LVIS_t0532	-	^{12 Thr tRNA}
571607	571689	+	83	116332681	LVIS_t0536	-	^{18 Tyr tRNA}
571699	571773	+	75	116332681	LVIS_t0537	-	^{05 Gln tRNA}
582938	583022	+	85	116332681	LVIS_t0549	-	^{15 Leu tRNA}
686104	686178	+	75	116332681	LVIS_t0657	-	^{11 Arg tRNA}
686979	687050	+	72	116332681	LVIS_t0659	-	^{11 Arg tRNA}
874659	874999	-	341	116332681	LVIS_r0847	-	RNA_RNaseP_classB
1118040	1118112	-	73	116332681	LVIS_t1109	-	Xaa tRNA
1118275	1118332	-	58	116332681	LVIS_t1110	-	Xaa tRNA
1118379	1118461	-	83	116332681	LVIS_t1111	-	^{18 Tyr tRNA}
1141829	1141903	-	75	116332681	LVIS_t1152	-	^{06 Asp tRNA}
1141909	1141982	-	74	116332681	LVIS_t1153	-	^{16 Met tRNA}
1142003	1142075	-	73	116332681	LVIS_t1154	-	^{04 Glu tRNA}
1142083	1142170	-	88	116332681	LVIS_t1155	-	^{08 Ser tRNA}
1142175	1142249	-	75	116332681	LVIS_t1156	-	^{14 Ile tRNA}
1142256	1142326	-	71	116332681	LVIS_t1157	-	^{01 Gly tRNA}
1142342	1142414	-	73	116332681	LVIS_t1158	-	^{17 Phe tRNA}
1142467	1142541	-	75	116332681	LVIS_t1159	-	^{06 Asp tRNA}
1142547	1142620	-	74	116332681	LVIS_t1160	-	^{16 Met tRNA}
1142631	1142720	-	90	116332681	LVIS_t1161	-	^{08 Ser tRNA}
1142754	1142827	-	74	116332681	LVIS_t1162	-	^{16 Met tRNA}
1142842	1142915	-	74	116332681	LVIS_t1163	-	^{16 Met tRNA}
1142942	1143015	-	74	116332681	LVIS_t1164	-	^{03 Pro tRNA}
1143022	1143095	-	74	116332681	LVIS_t1165	-	^{11 Arg tRNA}
1143128	1143199	-	72	116332681	LVIS_t1166	-	^{01 Gly tRNA}
1143205	1143277	-	73	116332681	LVIS_t1167	-	^{12 Thr tRNA}
1143327	1143399	-	73	116332681	LVIS_t1168	-	^{10 Lys tRNA}
1143403	1143475	-	73	116332681	LVIS_t1169	-	^{13 Val tRNA}
1143481	1143599	-	119	116332681	LVIS_r1170	-	5S ribosomal RNA
1143668	1146585	-	2918	116332681	LVIS_r1171	-	23S ribosomal RNA
1146802	1148364	-	1563	116332681	LVIS_r1172	-	16S ribosomal RNA
1277086	1277161	-	76	116332681	LVIS_t1305	-	^{05 Gln tRNA}
1277341	1277414	+	74	116332681	LVIS_t1306	-	^{04 Glu tRNA}
1289472	1289843	+	372	116332681	LVIS_s1317	-	tmRNA
1341522	1341609	-	88	116332681	LVIS_t1370	-	^{08 Ser tRNA}
1464858	1464928	-	71	116332681	LVIS_t1492	-	^{01 Gly tRNA}
1482583	1482666	-	84	116332681	LVIS_t1510	-	^{15 Leu tRNA}
1500095	1500179	-	85	116332681	LVIS_t1530	-	^{15 Leu tRNA}
1500214	1500284	-	71	116332681	LVIS_t1531	-	^{19 Cys tRNA}
1500339	1500414	-	76	116332681	LVIS_t1532	-	^{09 His tRNA}
1500428	1500498	-	71	116332681	LVIS_t1533	-	^{20 Trp tRNA}
1500500	1500585	-	86	116332681	LVIS_t1534	-	^{18 Tyr tRNA}
1500590	1500662	-	73	116332681	LVIS_t1535	-	^{17 Phe tRNA}
1500710	1500784	-	75	116332681	LVIS_t1536	-	^{06 Asp tRNA}
1500804	1500876	-	73	116332681	LVIS_t1537	-	^{13 Val tRNA}
1500881	1500953	-	73	116332681	LVIS_t1538	-	^{04 Glu tRNA}
1500967	1501057	-	91	116332681	LVIS_t1539	-	^{08 Ser tRNA}
1501067	1501139	-	73	116332681	LVIS_t1540	-	^{07 Asn tRNA}
1501144	1501262	-	119	116332681	LVIS_r1541	-	5S ribosomal RNA
1501331	1504248	-	2918	116332681	LVIS_r1542	-	23S ribosomal RNA
1504418	1504490	-	73	116332681	LVIS_t1543	-	^{02 Ala tRNA}
1504513	1504587	-	75	116332681	LVIS_t1544	-	^{14 Ile tRNA}
1504667	1506229	-	1563	116332681	LVIS_r1545	-	16S ribosomal RNA
1544596	1544668	-	73	116332681	LVIS_t1579	-	^{11 Arg tRNA}
1664631	1664704	-	74	116332681	LVIS_t1702	-	^{03 Pro tRNA}
1664733	1664806	-	74	116332681	LVIS_t1703	-	^{03 Pro tRNA}
1664841	1664914	-	74	116332681	LVIS_t1704	-	^{11 Arg tRNA}
1664935	1665020	-	86	116332681	LVIS_t1705	-	^{15 Leu tRNA}
1665031	1665102	-	72	116332681	LVIS_t1706	-	^{01 Gly tRNA}
1665129	1665201	-	73	116332681	LVIS_t1707	-	^{12 Thr tRNA}
1665239	1665320	-	82	116332681	LVIS_t1708	-	^{15 Leu tRNA}
1665358	1665430	-	73	116332681	LVIS_t1709	-	^{13 Val tRNA}
1801928	1802000	+	73	116332681	LVIS_t1841	-	^{02 Ala tRNA}
1895453	1895526	-	74	116332681	LVIS_t1937	-	^{11 Arg tRNA}
2091276	2091347	-	72	116332681	LVIS_t2126	-	^{11 Arg tRNA}
2113225	2113296	-	72	116332681	LVIS_t2146	-	^{05 Gln tRNA}