Геном прокариот/Материалы:NC 008526

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008526            2895264 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Lactobacillus casei ATCC 334, complete genome.
   ACCESSION   NC_008526
   VERSION     NC_008526.1  GI:116493574
   KEYWORDS    .
   SOURCE      Lactobacillus casei ATCC 334
     ORGANISM  Lactobacillus casei ATCC 334
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Lactobacillus.
   REFERENCE   1  (bases 1 to 2895264)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 2895264)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2895264)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (23-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000423.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662185
               Source DNA and bacteria available from Jeffery R. Broadbent
               (broadbnt@cc.usu.edu)
               Bacteria also available from ATCC: ATCC 334
               Contacts: Jeffery R. Broadbent (broadbnt@cc.usu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)
               URL -- http://www.fidelitysystems.com  Project Information
               available at: http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
259505	261078	+	1574	116493574	LSEI_r0258	-	16S ribosomal RNA
261295	264214	+	2920	116493574	LSEI_r0259	-	23S ribosomal RNA
264412	264531	+	120	116493574	LSEI_r0260	-	5S ribosomal RNA
501060	501131	+	72	116493574	LSEI_t0485	-	^{11 Arg tRNA}
722753	722825	-	73	116493574	LSEI_t0719	-	^{02 Ala tRNA}
722847	722919	-	73	116493574	LSEI_t0720	-	^{02 Ala tRNA}
823774	825347	+	1574	116493574	LSEI_r0829	-	16S ribosomal RNA
825564	828483	+	2920	116493574	LSEI_r0830	-	23S ribosomal RNA
828679	828798	+	120	116493574	LSEI_r0831	-	5S ribosomal RNA
828803	828875	+	73	116493574	LSEI_t0832	-	^{13 Val tRNA}
828878	828950	+	73	116493574	LSEI_t0833	-	^{10 Lys tRNA}
828992	829064	+	73	116493574	LSEI_t0834	-	^{12 Thr tRNA}
829098	829169	+	72	116493574	LSEI_t0835	-	^{01 Gly tRNA}
829230	829303	+	74	116493574	LSEI_t0836	-	^{11 Arg tRNA}
829308	829381	+	74	116493574	LSEI_t0837	-	^{03 Pro tRNA}
829408	829481	+	74	116493574	LSEI_t0838	-	^{16 Met tRNA}
829490	829563	+	74	116493574	LSEI_t0839	-	^{16 Met tRNA}
829612	829685	+	74	116493574	LSEI_t0840	-	^{16 Met tRNA}
829693	829766	+	74	116493574	LSEI_t0841	-	^{06 Asp tRNA}
829772	829844	+	73	116493574	LSEI_t0842	-	^{17 Phe tRNA}
829864	829934	+	71	116493574	LSEI_t0843	-	^{01 Gly tRNA}
829949	830022	+	74	116493574	LSEI_t0844	-	^{14 Ile tRNA}
830052	830139	+	88	116493574	LSEI_t0845	-	^{08 Ser tRNA}
830144	830215	+	72	116493574	LSEI_t0846	-	^{04 Glu tRNA}
830225	830316	+	92	116493574	LSEI_t0847	-	^{08 Ser tRNA}
830327	830400	+	74	116493574	LSEI_t0848	-	^{16 Met tRNA}
830408	830481	+	74	116493574	LSEI_t0849	-	^{06 Asp tRNA}
830525	830597	+	73	116493574	LSEI_t0850	-	^{17 Phe tRNA}
830602	830682	+	81	116493574	LSEI_t0851	-	^{18 Tyr tRNA}
830689	830759	+	71	116493574	LSEI_t0852	-	^{20 Trp tRNA}
830771	830843	+	73	116493574	LSEI_t0853	-	^{09 His tRNA}
830852	830923	+	72	116493574	LSEI_t0854	-	^{05 Gln tRNA}
830966	831036	+	71	116493574	LSEI_t0855	-	^{19 Cys tRNA}
831083	831169	+	87	116493574	LSEI_t0856	-	^{15 Leu tRNA}
845524	847097	+	1574	116493574	LSEI_r0870	-	16S ribosomal RNA
847314	850233	+	2920	116493574	LSEI_r0871	-	23S ribosomal RNA
850429	850548	+	120	116493574	LSEI_r0872	-	5S ribosomal RNA
850554	850626	+	73	116493574	LSEI_t0873	-	^{07 Asn tRNA}
850635	850724	+	90	116493574	LSEI_t0874	-	^{08 Ser tRNA}
850979	851051	+	73	116493574	LSEI_t0875	-	^{13 Val tRNA}
866026	866109	+	84	116493574	LSEI_t0890	-	^{15 Leu tRNA}
946267	946338	+	72	116493574	LSEI_t0964	-	^{11 Arg tRNA}
1024479	1024842	-	364	116493574	LSEI_s1039	-	tmRNA
1064149	1064222	+	74	116493574	LSEI_t1079	-	^{11 Arg tRNA}
1122160	1122231	+	72	116493574	LSEI_t1137	-	^{04 Glu tRNA}
1127856	1127926	+	71	116493574	LSEI_t1143	-	^{05 Gln tRNA}
1471442	1471768	-	327	116493574	LSEI_r1477	-	RNA_RNaseP_classB
1545912	1545999	+	88	116493574	LSEI_t1551	-	^{08 Ser tRNA}
1644325	1644398	-	74	116493574	LSEI_t1650	-	^{11 Arg tRNA}
1724380	1724450	-	71	116493574	LSEI_t1729	-	^{01 Gly tRNA}
1787305	1787393	+	89	116493574	LSEI_t1794	-	^{15 Leu tRNA}
1806618	1806698	-	81	116493574	LSEI_t1811	-	^{18 Tyr tRNA}
1823054	1823126	-	73	116493574	LSEI_t1825	-	^{12 Thr tRNA}
1823131	1823202	-	72	116493574	LSEI_t1826	-	^{04 Glu tRNA}
1825412	1825484	-	73	116493574	LSEI_t1830	-	^{07 Asn tRNA}
1825492	1825611	-	120	116493574	LSEI_r1831	-	5S ribosomal RNA
1825733	1828652	-	2920	116493574	LSEI_r1832	-	23S ribosomal RNA
1828811	1828883	-	73	116493574	LSEI_t1833	-	^{02 Ala tRNA}
1828915	1828991	-	77	116493574	LSEI_t1834	-	^{14 Ile tRNA}
1829077	1830650	-	1574	116493574	LSEI_r1835	-	16S ribosomal RNA
2217604	2217675	-	72	116493574	LSEI_t2224	-	^{07 Asn tRNA}
2499939	2500012	-	74	116493574	LSEI_t2519	-	^{03 Pro tRNA}
2500017	2500088	-	72	116493574	LSEI_t2520	-	^{01 Gly tRNA}
2500135	2500211	-	77	116493574	LSEI_t2521	-	^{11 Arg tRNA}
2500223	2500308	-	86	116493574	LSEI_t2522	-	^{15 Leu tRNA}
2500320	2500391	-	72	116493574	LSEI_t2523	-	^{01 Gly tRNA}
2500467	2500549	-	83	116493574	LSEI_t2524	-	^{15 Leu tRNA}
2500567	2500639	-	73	116493574	LSEI_t2525	-	^{10 Lys tRNA}
2500642	2500714	-	73	116493574	LSEI_t2526	-	^{13 Val tRNA}
2500721	2500840	-	120	116493574	LSEI_r2527	-	5S ribosomal RNA
2501036	2503955	-	2920	116493574	LSEI_r2528	-	23S ribosomal RNA
2504114	2504186	-	73	116493574	LSEI_t2529	-	^{02 Ala tRNA}
2504218	2504294	-	77	116493574	LSEI_t2530	-	^{14 Ile tRNA}
2504380	2505953	-	1574	116493574	LSEI_r2531	-	16S ribosomal RNA
2620404	2620476	-	73	116493574	LSEI_t2634	-	^{12 Thr tRNA}
2861966	2862038	-	73	116493574	LSEI_t2881	-	^{10 Lys tRNA}