Геном прокариот/Материалы:NC 008528

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008528            1780517 bp    DNA     circular BCT 31-OCT-2006
   DEFINITION  Oenococcus oeni PSU-1, complete genome.
   ACCESSION   NC_008528
   VERSION     NC_008528.1  GI:116490126
   KEYWORDS    .
   SOURCE      Oenococcus oeni PSU-1
     ORGANISM  Oenococcus oeni PSU-1
               Bacteria; Firmicutes; Lactobacillales; Oenococcus.
   REFERENCE   1  (bases 1 to 1780517)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 1780517)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1780517)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000411.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662182
               Source DNA and bacteria available from David Mills
               (damills@ucdavis.edu)
               Contacts: David Mills (damills@ucdavis.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)
               URL -- http://www.fidelitysystems.com  Project Information
               available at: http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
97797	97869	-	73	116490126	OEOE_t0104	-	^{10 Lys tRNA}
184055	184127	+	73	116490126	OEOE_t0193	-	^{07 Asn tRNA}
184194	184266	+	73	116490126	OEOE_t0194	-	^{12 Thr tRNA}
389125	389197	-	73	116490126	OEOE_t0403	-	^{11 Arg tRNA}
393198	393270	+	73	116490126	OEOE_t0409	-	^{11 Arg tRNA}
429554	429627	-	74	116490126	OEOE_t0442	-	^{12 Thr tRNA}
431415	431499	-	85	116490126	OEOE_t0445	-	^{15 Leu tRNA}
489667	490016	-	350	116490126	OEOE_s0505	-	tmRNA
490141	490212	+	72	116490126	OEOE_t0506	-	^{04 Glu tRNA}
512229	512316	+	88	116490126	OEOE_t0530	-	^{08 Ser tRNA}
616309	617875	+	1567	116490126	OEOE_r0653	-	16S ribosomal RNA
617973	618045	+	73	116490126	OEOE_t0654	-	^{02 Ala tRNA}
618261	621148	+	2888	116490126	OEOE_r0655	-	23S ribosomal RNA
621245	621280	+	36	116490126	OEOE_r0656	-	5S ribosomal RNA
646054	646130	+	77	116490126	OEOE_t0685	-	^{10 Lys tRNA}
657699	657773	+	75	116490126	OEOE_t0698	-	^{04 Glu tRNA}
729898	729969	-	72	116490126	OEOE_t0781	-	^{01 Gly tRNA}
763895	763965	+	71	116490126	OEOE_t0816	-	^{19 Cys tRNA}
798601	798684	+	84	116490126	OEOE_t0851	-	^{15 Leu tRNA}
864352	864425	+	74	116490126	OEOE_t0921	-	^{20 Trp tRNA}
864428	864501	+	74	116490126	OEOE_t0922	-	^{09 His tRNA}
864540	864623	+	84	116490126	OEOE_t0923	-	^{15 Leu tRNA}
894078	894151	+	74	116490126	OEOE_t0955	-	^{11 Arg tRNA}
901908	901999	-	92	116490126	OEOE_t0967	-	^{08 Ser tRNA}
1021190	1021513	-	324	116490126	OEOE_r1091	-	RNA_RNaseP_classB
1146569	1146661	-	93	116490126	OEOE_t1213	-	^{08 Ser tRNA}
1146741	1146814	-	74	116490126	OEOE_t1214	-	^{14 Ile tRNA}
1146817	1146887	-	71	116490126	OEOE_t1215	-	^{01 Gly tRNA}
1146908	1146980	-	73	116490126	OEOE_t1216	-	^{17 Phe tRNA}
1147012	1147086	-	75	116490126	OEOE_t1217	-	^{06 Asp tRNA}
1147143	1147216	-	74	116490126	OEOE_t1218	-	^{16 Met tRNA}
1147243	1147332	-	90	116490126	OEOE_t1219	-	^{08 Ser tRNA}
1147352	1147425	-	74	116490126	OEOE_t1220	-	^{16 Met tRNA}
1147439	1147512	-	74	116490126	OEOE_t1221	-	^{16 Met tRNA}
1147534	1147607	-	74	116490126	OEOE_t1222	-	^{03 Pro tRNA}
1147672	1147745	-	74	116490126	OEOE_t1223	-	^{11 Arg tRNA}
1147812	1147895	-	84	116490126	OEOE_t1224	-	^{15 Leu tRNA}
1147917	1147988	-	72	116490126	OEOE_t1225	-	^{01 Gly tRNA}
1148009	1148081	-	73	116490126	OEOE_t1226	-	^{12 Thr tRNA}
1148120	1148192	-	73	116490126	OEOE_t1227	-	^{13 Val tRNA}
1263744	1263827	-	84	116490126	OEOE_t1359	-	^{15 Leu tRNA}
1273728	1273763	-	36	116490126	OEOE_r1370	-	5S ribosomal RNA
1273860	1276747	-	2888	116490126	OEOE_r1371	-	23S ribosomal RNA
1276963	1277035	-	73	116490126	OEOE_t1372	-	^{02 Ala tRNA}
1277133	1278699	-	1567	116490126	OEOE_r1373	-	16S ribosomal RNA
1540760	1540832	-	73	116490126	OEOE_t1622	-	^{05 Gln tRNA}
1556286	1556359	-	74	116490126	OEOE_t1637	-	^{03 Pro tRNA}
1736852	1736924	+	73	116490126	OEOE_t1816	-	^{02 Ala tRNA}
1764949	1765020	-	72	116490126	OEOE_t1842	-	^{07 Asn tRNA}
1767500	1767582	+	83	116490126	OEOE_t1846	-	^{18 Tyr tRNA}
1767630	1767702	+	73	116490126	OEOE_t1847	-	^{05 Gln tRNA}