Геном прокариот/Материалы:NC 008530

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008530            1894360 bp    DNA     circular BCT 31-OCT-2006
   DEFINITION  Lactobacillus gasseri ATCC 33323, complete genome.
   ACCESSION   NC_008530
   VERSION     NC_008530.1  GI:116628683
   KEYWORDS    .
   SOURCE      Lactobacillus gasseri ATCC 33323
     ORGANISM  Lactobacillus gasseri ATCC 33323
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Lactobacillus.
   REFERENCE   1  (bases 1 to 1894360)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 1894360)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1894360)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000413.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2661979
               Source DNA and bacteria available from Todd Klaenhammer
               (trk@unity.ncsu.edu)
               Bacteria also available from ATCC: ATCC 33323
               Contacts: Todd Klaenhammer (trk@unity.ncsu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)
               URL -- http://www.fidelitysystems.com  Project Information
               available at: http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
20396	20468	+	73	116628683	LGAS_t0018	-	^{12 Thr tRNA}
23614	23689	+	76	116628683	LGAS_t0023	-	^{12 Thr tRNA}
77784	77856	-	73	116628683	LGAS_t0062	-	^{10 Lys tRNA}
77982	78054	-	73	116628683	LGAS_t0063	-	^{10 Lys tRNA}
213530	213602	+	73	116628683	LGAS_t0178	-	^{12 Thr tRNA}
231930	232000	-	71	116628683	LGAS_t0199	-	^{01 Gly tRNA}
318480	318554	+	75	116628683	LGAS_t0281	-	^{01 Gly tRNA}
318595	318668	+	74	116628683	LGAS_t0282	-	^{03 Pro tRNA}
477570	479148	+	1579	116628683	LGAS_r0449	-	16S ribosomal RNA
479701	482332	+	2632	116628683	LGAS_r0450	-	23S ribosomal RNA
482332	482450	+	119	116628683	LGAS_r0451	-	5S ribosomal RNA
482463	482535	+	73	116628683	LGAS_t0452	-	^{07 Asn tRNA}
482558	482647	+	90	116628683	LGAS_t0453	-	^{08 Ser tRNA}
482764	482835	+	72	116628683	LGAS_t0454	-	^{04 Glu tRNA}
482859	482931	+	73	116628683	LGAS_t0455	-	^{13 Val tRNA}
600613	600685	+	73	116628683	LGAS_t0571	-	^{11 Arg tRNA}
613549	613621	+	73	116628683	LGAS_t0598	-	^{05 Gln tRNA}
614213	614294	+	82	116628683	LGAS_t0600	-	Xaa tRNA
653635	653707	+	73	116628683	LGAS_t0660	-	^{05 Gln tRNA}
654299	654380	+	82	116628683	LGAS_t0662	-	Xaa tRNA
701626	701699	+	74	116628683	LGAS_t0718	-	^{11 Arg tRNA}
823695	823782	+	88	116628683	LGAS_t0836	-	^{08 Ser tRNA}
1023919	1024248	-	330	116628683	LGAS_r1021	-	RNA_RNaseP_classB
1250456	1250528	-	73	116628683	LGAS_t1252	-	^{05 Gln tRNA}
1250535	1250606	-	72	116628683	LGAS_t1253	-	^{04 Glu tRNA}
1264702	1265067	-	366	116628683	LGAS_s1268	-	tmRNA
1301986	1302057	+	72	116628683	LGAS_t1310	-	Xaa tRNA
1442710	1442793	-	84	116628683	LGAS_t1454	-	^{15 Leu tRNA}
1512369	1512457	-	89	116628683	LGAS_t1519	-	^{15 Leu tRNA}
1531077	1531148	-	72	116628683	LGAS_t1538	-	^{05 Gln tRNA}
1531203	1531284	-	82	116628683	LGAS_t1539	-	^{18 Tyr tRNA}
1535181	1535252	-	72	116628683	LGAS_t1545	-	^{05 Gln tRNA}
1540520	1540592	-	73	116628683	LGAS_t1552	-	^{12 Thr tRNA}
1555766	1555838	-	73	116628683	LGAS_t1563	-	^{07 Asn tRNA}
1555851	1555969	-	119	116628683	LGAS_r1564	-	5S ribosomal RNA
1555970	1558600	-	2631	116628683	LGAS_r1565	-	23S ribosomal RNA
1559153	1560731	-	1579	116628683	LGAS_r1566	-	16S ribosomal RNA
1561127	1561216	-	90	116628683	LGAS_t1567	-	^{08 Ser tRNA}
1561219	1561292	-	74	116628683	LGAS_t1568	-	^{14 Ile tRNA}
1561302	1561375	-	74	116628683	LGAS_t1569	-	^{01 Gly tRNA}
1561393	1561465	-	73	116628683	LGAS_t1570	-	^{17 Phe tRNA}
1561470	1561542	-	73	116628683	LGAS_t1571	-	^{06 Asp tRNA}
1561546	1561619	-	74	116628683	LGAS_t1572	-	^{16 Met tRNA}
1561651	1561724	-	74	116628683	LGAS_t1573	-	^{16 Met tRNA}
1561738	1561811	-	74	116628683	LGAS_t1574	-	^{16 Met tRNA}
1561840	1561913	-	74	116628683	LGAS_t1575	-	^{03 Pro tRNA}
1561919	1561992	-	74	116628683	LGAS_t1576	-	^{11 Arg tRNA}
1562002	1562087	-	86	116628683	LGAS_t1577	-	^{15 Leu tRNA}
1562100	1562171	-	72	116628683	LGAS_t1578	-	^{01 Gly tRNA}
1562191	1562263	-	73	116628683	LGAS_t1579	-	^{12 Thr tRNA}
1562265	1562349	-	85	116628683	LGAS_t1580	-	^{15 Leu tRNA}
1562369	1562441	-	73	116628683	LGAS_t1581	-	^{10 Lys tRNA}
1562444	1562516	-	73	116628683	LGAS_t1582	-	^{13 Val tRNA}
1562521	1562639	-	119	116628683	LGAS_r1583	-	5S ribosomal RNA
1562640	1565270	-	2631	116628683	LGAS_r1584	-	23S ribosomal RNA
1565823	1567401	-	1579	116628683	LGAS_r1585	-	16S ribosomal RNA
1573405	1573488	-	84	116628683	LGAS_t1590	-	^{15 Leu tRNA}
1573520	1573590	-	71	116628683	LGAS_t1591	-	^{19 Cys tRNA}
1573611	1573682	-	72	116628683	LGAS_t1592	-	^{05 Gln tRNA}
1573687	1573762	-	76	116628683	LGAS_t1593	-	^{09 His tRNA}
1573777	1573847	-	71	116628683	LGAS_t1594	-	^{20 Trp tRNA}
1573855	1573936	-	82	116628683	LGAS_t1595	-	^{18 Tyr tRNA}
1573941	1574013	-	73	116628683	LGAS_t1596	-	^{17 Phe tRNA}
1574018	1574090	-	73	116628683	LGAS_t1597	-	^{06 Asp tRNA}
1574094	1574167	-	74	116628683	LGAS_t1598	-	^{16 Met tRNA}
1574175	1574265	-	91	116628683	LGAS_t1599	-	^{08 Ser tRNA}
1574291	1574362	-	72	116628683	LGAS_t1600	-	^{04 Glu tRNA}
1575301	1575390	-	90	116628683	LGAS_t1602	-	^{08 Ser tRNA}
1575393	1575466	-	74	116628683	LGAS_t1603	-	^{14 Ile tRNA}
1575476	1575549	-	74	116628683	LGAS_t1604	-	^{01 Gly tRNA}
1575567	1575639	-	73	116628683	LGAS_t1605	-	^{17 Phe tRNA}
1575644	1575716	-	73	116628683	LGAS_t1606	-	^{06 Asp tRNA}
1575720	1575793	-	74	116628683	LGAS_t1607	-	^{16 Met tRNA}
1575825	1575898	-	74	116628683	LGAS_t1608	-	^{16 Met tRNA}
1575912	1575985	-	74	116628683	LGAS_t1609	-	^{16 Met tRNA}
1576014	1576087	-	74	116628683	LGAS_t1610	-	^{03 Pro tRNA}
1576093	1576166	-	74	116628683	LGAS_t1611	-	^{11 Arg tRNA}
1576176	1576261	-	86	116628683	LGAS_t1612	-	^{15 Leu tRNA}
1576274	1576345	-	72	116628683	LGAS_t1613	-	^{01 Gly tRNA}
1576365	1576437	-	73	116628683	LGAS_t1614	-	^{12 Thr tRNA}
1576439	1576523	-	85	116628683	LGAS_t1615	-	^{15 Leu tRNA}
1576543	1576615	-	73	116628683	LGAS_t1616	-	^{10 Lys tRNA}
1576618	1576690	-	73	116628683	LGAS_t1617	-	^{13 Val tRNA}
1576695	1576813	-	119	116628683	LGAS_r1618	-	5S ribosomal RNA
1576814	1579444	-	2631	116628683	LGAS_r1619	-	23S ribosomal RNA
1579997	1581575	-	1579	116628683	LGAS_r1620	-	16S ribosomal RNA
1783066	1783138	-	73	116628683	LGAS_t1796	-	^{07 Asn tRNA}
1783151	1783269	-	119	116628683	LGAS_r1797	-	5S ribosomal RNA
1783270	1785900	-	2631	116628683	LGAS_r1798	-	23S ribosomal RNA
1786359	1786431	-	73	116628683	LGAS_t1799	-	^{02 Ala tRNA}
1786465	1786538	-	74	116628683	LGAS_t1800	-	^{14 Ile tRNA}
1786679	1788257	-	1579	116628683	LGAS_r1801	-	16S ribosomal RNA
1788578	1788653	-	76	116628683	LGAS_t1802	-	^{07 Asn tRNA}
1788666	1788784	-	119	116628683	LGAS_r1803	-	5S ribosomal RNA
1788785	1791415	-	2631	116628683	LGAS_r1804	-	23S ribosomal RNA
1791874	1791946	-	73	116628683	LGAS_t1805	-	^{02 Ala tRNA}
1791980	1792053	-	74	116628683	LGAS_t1806	-	^{14 Ile tRNA}
1792194	1793772	-	1579	116628683	LGAS_r1807	-	16S ribosomal RNA