Геном прокариот/Материалы:NC 008536

	Базовый уровень статей Выделить только проверенную информацию
	Создать черновик

Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008536            9965640 bp    DNA     circular BCT 24-OCT-2006
   DEFINITION  Solibacter usitatus Ellin6076, complete genome.
   ACCESSION   NC_008536
   VERSION     NC_008536.1  GI:116619145
   KEYWORDS    .
   SOURCE      Solibacter usitatus Ellin6076
     ORGANISM  Solibacter usitatus Ellin6076
               Bacteria; Acidobacteria; Solibacteres; Solibacterales;
               Solibacteraceae; Solibacter.
   REFERENCE   1  (bases 1 to 9965640)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Solibacter usitatus Ellin6076
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 9965640)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 9965640)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (06-OCT-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000473.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634513
               Source DNA and bacteria available from Cheryl R. Kuske
               (kuske@lanl.gov)
               Contacts: Cheryl R. Kuske (kuske@lanl.gov)
                    Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
19687	19763	-	77	116619145	Acid_R0001	-	^{11 Arg tRNA}
182141	182218	+	78	116619145	Acid_R0002	-	^{03 Pro tRNA}
327532	327608	-	77	116619145	Acid_R0003	-	^{16 Met tRNA}
348949	349025	-	77	116619145	Acid_R0004	-	^{16 Met tRNA}
630260	630334	-	75	116619145	Acid_R0005	-	^{01 Gly tRNA}
709547	709622	-	76	116619145	Acid_R0006	-	^{16 Met tRNA}
746084	746160	+	77	116619145	Acid_R0007	-	^{13 Val tRNA}
882526	882600	-	75	116619145	Acid_R0008	-	^{07 Asn tRNA}
1209504	1209577	+	74	116619145	Acid_R0009	-	^{05 Gln tRNA}
1248105	1249598	+	1494	116619145	Acid_R0010	-	16S ribosomal RNA
1249865	1249940	+	76	116619145	Acid_R0011	-	^{02 Ala tRNA}
1249955	1250031	+	77	116619145	Acid_R0012	-	^{14 Ile tRNA}
1250233	1253163	+	2931	116619145	Acid_R0013	-	23S ribosomal RNA
1253304	1253420	+	117	116619145	Acid_R0014	-	5S ribosomal RNA
1431141	1431217	-	77	116619145	Acid_R0015	-	^{16 Met tRNA}
1688343	1688431	-	89	116619145	Acid_R0016	-	^{15 Leu tRNA}
1691811	1691886	+	76	116619145	Acid_R0017	-	^{10 Lys tRNA}
1811009	1811085	+	77	116619145	Acid_R0018	-	^{11 Arg tRNA}
1969439	1970932	+	1494	116619145	Acid_R0019	-	16S ribosomal RNA
1971197	1971272	+	76	116619145	Acid_R0020	-	^{02 Ala tRNA}
1971305	1971381	+	77	116619145	Acid_R0021	-	^{14 Ile tRNA}
1971626	1974556	+	2931	116619145	Acid_R0022	-	23S ribosomal RNA
1974694	1974810	+	117	116619145	Acid_R0023	-	5S ribosomal RNA
1983234	1983310	+	77	116619145	Acid_R0024	-	^{03 Pro tRNA}
2068389	2068480	+	92	116619145	Acid_R0025	-	^{08 Ser tRNA}
2200500	2200574	+	75	116619145	Acid_R0026	-	^{19 Cys tRNA}
2389808	2389884	+	77	116619145	Acid_R0027	-	^{11 Arg tRNA}
2703580	2703654	-	75	116619145	Acid_R0028	-	^{04 Glu tRNA}
2995019	2995095	-	77	116619145	Acid_R0029	-	^{13 Val tRNA}
3409567	3409656	-	90	116619145	Acid_R0030	-	^{08 Ser tRNA}
3488758	3488833	+	76	116619145	Acid_R0031	-	^{10 Lys tRNA}
3585610	3585685	+	76	116619145	Acid_R0032	-	^{02 Ala tRNA}
3673987	3674061	+	75	116619145	Acid_R0033	-	^{01 Gly tRNA}
4008774	4008874	-	101	116619145	Acid_R0034	-	SRP RNA; RNA component of signal recognition particle
4117336	4117425	+	90	116619145	Acid_R0035	-	Sec tRNA
4360710	4360781	+	72	116619145	Acid_R0036	-	^{16 Met tRNA}
4664464	4664540	-	77	116619145	Acid_R0037	-	^{03 Pro tRNA}
4706493	4706566	-	74	116619145	Acid_R0038	-	^{05 Gln tRNA}
4999957	5000033	-	77	116619145	Acid_R0039	-	^{09 His tRNA}
5195913	5196108	+	196	116619145	Acid_R0040	-	RNA component of RNaseP
5294404	5294752	-	349	116619145	Acid_R0041	-	tmRNA
5838272	5838397	+	126	116619145	Acid_R0042	-
5945044	5945120	-	77	116619145	Acid_R0043	-	^{13 Val tRNA}
6120101	6120177	+	77	116619145	Acid_R0044	-	^{06 Asp tRNA}
6256025	6256111	+	87	116619145	Acid_R0045	-	^{15 Leu tRNA}
6277952	6278028	+	77	116619145	Acid_R0046	-	^{11 Arg tRNA}
6734555	6734632	+	78	116619145	Acid_R0047	-	^{04 Glu tRNA}
6791461	6791536	-	76	116619145	Acid_R0048	-	^{17 Phe tRNA}
6814760	6814849	-	90	116619145	Acid_R0049	-	^{08 Ser tRNA}
7518659	7518734	+	76	116619145	Acid_R0050	-	^{12 Thr tRNA}
7598057	7598134	+	78	116619145	Acid_R0051	-	Xaa tRNA
7940543	7940630	+	88	116619145	Acid_R0052	-	^{18 Tyr tRNA}
7940701	7940776	+	76	116619145	Acid_R0053	-	^{12 Thr tRNA}
7942298	7942372	+	75	116619145	Acid_R0054	-	^{20 Trp tRNA}
7943870	7943956	+	87	116619145	Acid_R0055	-	^{15 Leu tRNA}
8326562	8326637	-	76	116619145	Acid_R0056	-	^{12 Thr tRNA}
8478218	8478304	+	87	116619145	Acid_R0057	-	^{15 Leu tRNA}
9616774	9616850	-	77	116619145	Acid_R0058	-	^{11 Arg tRNA}
9855350	9855438	-	89	116619145	Acid_R0059	-	^{15 Leu tRNA}
9855481	9855570	-	90	116619145	Acid_R0060	-	^{08 Ser tRNA}
9930164	9930239	-	76	116619145	Acid_R0061	-	^{02 Ala tRNA}
9965388	9965463	-	76	116619145	Acid_R0062	-	^{01 Gly tRNA}