Геном прокариот/Материалы:NC 008554

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008554            4990251 bp    DNA     circular BCT 01-NOV-2006
   DEFINITION  Syntrophobacter fumaroxidans MPOB, complete genome.
   ACCESSION   NC_008554
   VERSION     NC_008554.1  GI:116747452
   KEYWORDS    .
   SOURCE      Syntrophobacter fumaroxidans MPOB
     ORGANISM  Syntrophobacter fumaroxidans MPOB
               Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales;
               Syntrophobacteraceae; Syntrophobacter.
   REFERENCE   1  (bases 1 to 4990251)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.G.,
               Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J.,
               Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L.,
               Scholten,J., Sieber,J., Stams,A.J.M., Worm,P., Henstra,A.M. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Syntrophobacter fumaroxidans MPOB
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4990251)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (27-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4990251)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.G.,
               Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J.,
               Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L.,
               Scholten,J., Sieber,J., Stams,A.J.M., Worm,P., Henstra,A.M. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (23-OCT-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000478.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634477
               Source DNA and bacteria available from Michael J. McInerney
               (mcinerney@ou.edu)
               Contacts: Michael J. McInerney (mcinerney@ou.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
2632	2708	-	77	116747452	Sfum_R0001	-	^{16 Met tRNA}
97015	97089	+	75	116747452	Sfum_R0002	-	^{19 Cys tRNA}
117774	117850	-	77	116747452	Sfum_R0003	-	^{06 Asp tRNA}
117864	117939	-	76	116747452	Sfum_R0004	-	^{13 Val tRNA}
124502	124588	-	87	116747452	Sfum_R0005	-	^{15 Leu tRNA}
253670	253745	+	76	116747452	Sfum_R0006	-	^{17 Phe tRNA}
391640	391715	+	76	116747452	Sfum_R0007	-	^{02 Ala tRNA}
513785	513859	+	75	116747452	Sfum_R0008	-	^{13 Val tRNA}
643671	643745	-	75	116747452	Sfum_R0009	-	^{12 Thr tRNA}
727351	727444	-	94	116747452	Sfum_R0010	-	SRP RNA; RNA component of signal recognition particle
818767	818843	-	77	116747452	Sfum_R0011	-	^{20 Trp tRNA}
832021	832096	+	76	116747452	Sfum_R0012	-	^{13 Val tRNA}
847128	848682	+	1555	116747452	Sfum_R0013	-	16S ribosomal RNA
848741	848819	+	79	116747452	Sfum_R0014	-	^{14 Ile tRNA}
848853	848928	+	76	116747452	Sfum_R0015	-	^{02 Ala tRNA}
849287	852097	+	2811	116747452	Sfum_R0016	-	23S ribosomal RNA
852169	852285	+	117	116747452	Sfum_R0017	-	5S ribosomal RNA
995891	996019	-	129	116747452	Sfum_R0018	-
999525	999600	-	76	116747452	Sfum_R0019	-	^{09 His tRNA}
1053856	1053930	+	75	116747452	Sfum_R0020	-	^{01 Gly tRNA}
1085869	1085963	+	95	116747452	Sfum_R0021	-	Sec tRNA
1206296	1206371	-	76	116747452	Sfum_R0022	-	^{04 Glu tRNA}
1206381	1206454	-	74	116747452	Sfum_R0023	-	^{05 Gln tRNA}
1274887	1274963	-	77	116747452	Sfum_R0024	-	^{11 Arg tRNA}
1313294	1313370	+	77	116747452	Sfum_R0025	-	^{01 Gly tRNA}
1375527	1375602	-	76	116747452	Sfum_R0026	-	^{02 Ala tRNA}
1382201	1382273	-	73	116747452	Sfum_R0027	-	^{02 Ala tRNA}
1382637	1382724	+	88	116747452	Sfum_R0028	-	^{15 Leu tRNA}
1497358	1497430	-	73	116747452	Sfum_R0029	-	^{16 Met tRNA}
1518030	1518105	+	76	116747452	Sfum_R0030	-	^{01 Gly tRNA}
1551485	1551561	-	77	116747452	Sfum_R0031	-	^{03 Pro tRNA}
1782059	1782130	+	72	116747452	Sfum_R0032	-	^{12 Thr tRNA}
1900534	1900618	+	85	116747452	Sfum_R0033	-	^{18 Tyr tRNA}
1900784	1900860	+	77	116747452	Sfum_R0034	-	^{12 Thr tRNA}
1971357	1971433	+	77	116747452	Sfum_R0035	-	^{11 Arg tRNA}
1971453	1971527	+	75	116747452	Sfum_R0036	-	^{10 Lys tRNA}
2009580	2009902	-	323	116747452	Sfum_R0037	-	RNA component of RNaseP
2034257	2034436	-	180	116747452	Sfum_R0038	-
2207674	2207806	-	133	116747452	Sfum_R0039	-
2361379	2361456	+	78	116747452	Sfum_R0040	-	^{03 Pro tRNA}
2516710	2516795	-	86	116747452	Sfum_R0041	-	^{15 Leu tRNA}
2956592	2956762	+	171	116747452	Sfum_R0042	-
2990428	2990515	+	88	116747452	Sfum_R0043	-	^{15 Leu tRNA}
3000428	3000511	+	84	116747452	Sfum_R0044	-	Xaa tRNA
3121848	3121940	+	93	116747452	Sfum_R0045	-	^{08 Ser tRNA}
3121958	3122051	+	94	116747452	Sfum_R0046	-	^{08 Ser tRNA}
3183599	3183715	-	117	116747452	Sfum_R0047	-	5S ribosomal RNA
3183787	3186597	-	2811	116747452	Sfum_R0048	-	23S ribosomal RNA
3186956	3187031	-	76	116747452	Sfum_R0049	-	^{02 Ala tRNA}
3187065	3187143	-	79	116747452	Sfum_R0050	-	^{14 Ile tRNA}
3187202	3188756	-	1555	116747452	Sfum_R0051	-	16S ribosomal RNA
3438094	3438189	+	96	116747452	Sfum_R0052	-	^{08 Ser tRNA}
3438305	3438397	+	93	116747452	Sfum_R0053	-	^{08 Ser tRNA}
3445275	3445350	+	76	116747452	Sfum_R0054	-	^{07 Asn tRNA}
3516657	3516732	+	76	116747452	Sfum_R0055	-	^{11 Arg tRNA}
3638674	3638748	-	75	116747452	Sfum_R0056	-	^{03 Pro tRNA}
3903641	3903727	-	87	116747452	Sfum_R0057	-	^{15 Leu tRNA}
4205868	4205945	-	78	116747452	Sfum_R0058	-	^{04 Glu tRNA}
4205999	4206074	-	76	116747452	Sfum_R0059	-	^{10 Lys tRNA}
4437177	4437253	-	77	116747452	Sfum_R0060	-	^{11 Arg tRNA}
4459662	4459736	+	75	116747452	Sfum_R0061	-	^{05 Gln tRNA}
4570821	4570897	-	77	116747452	Sfum_R0062	-	^{11 Arg tRNA}
4622994	4623344	+	351	116747452	Sfum_R0063	-	tmRNA
4857774	4857850	-	77	116747452	Sfum_R0064	-	^{16 Met tRNA}