Геном прокариот/Материалы:NC 008600

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008600            5257091 bp    DNA     circular BCT 18-APR-2007
   DEFINITION  Bacillus thuringiensis str. Al Hakam, complete genome.
   ACCESSION   NC_008600
   VERSION     NC_008600.1  GI:118475778
   KEYWORDS    .
   SOURCE      Bacillus thuringiensis str. Al Hakam
     ORGANISM  Bacillus thuringiensis str. Al Hakam
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus
               cereus group.
   REFERENCE   1  (bases 1 to 5257091)
     AUTHORS   Challacombe,J.F., Altherr,M.R., Xie,G., Bhotika,S.S., Brown,N.,
               Bruce,D., Campbell,C.S., Campbell,M.L., Chen,J., Chertkov,O.,
               Cleland,C., Dimitrijevic,M., Doggett,N.A., Fawcett,J.J.,
               Glavina,T., Goodwin,L.A., Green,L.D., Han,C.S., Hill,K.K.,
               Hitchcock,P., Jackson,P.J., Keim,P., Kewalramani,A.R., Longmire,J.,
               Lucas,S., Malfatti,S., Martinez,D., McMurry,K., Meincke,L.J.,
               Misra,M., Moseman,B.L., Mundt,M., Munk,A.C., Okinaka,R.T.,
               Parson-Quintana,B., Reilly,L.P., Richardson,P., Robinson,D.L.,
               Saunders,E., Tapia,R., Tesmer,J.G., Thayer,N., Thompson,L.S.,
               Tice,H., Ticknor,L.O., Wills,P.L., Gilna,P. and Brettin,T.S.
     TITLE     The Complete Genome Sequence of Bacillus thuringiensis Al Hakam
     JOURNAL   J. Bacteriol. 189, 3680-3681 (2007)
      PUBMED   17337577
   REFERENCE   2  (bases 1 to 5257091)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-NOV-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5257091)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Detter,J.C., Dalin,E., Tice,H., Pitluck,S., Chertkov,O.,
               Goodwin,L.A., Han,l., Munk,A.C., Saunders,E., Brettin,T.S.,
               Bruce,D., Challacombe,J.F., Gilna,P., Martinez,A.D., Misra,M.,
               Tapia,R., Thayer,N.N., Xie,G., Brown,N., Green,L.D., Hill,K.K.,
               Jackson,P.J., Longmire,J., Rubin,E. and Richardson,P.
     TITLE     Direct Submission
     JOURNAL   Submitted (14-NOV-2006) Joint Genome Institute, Department of
               Energy, 2800 Mitchell Drive, Walnut Creek, Ca 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000485.
               Bacillus thuringiensis Al Hakam was collected at a suspected
               bioweapons facility in Iraq by the United Nations Special
               Commission (Genome differences that distinguish Bacillus anthracis
               from Bacillus cereus and Bacillus thuringiensis. Radnedge, L,
               Agron, PG Hill, KK, Jackson, PJ, Ticknor, LO, Keim, P, and
               Andersen, GL. Appl Environ Microbiol 2003. 69:2755-64). Plasmid and
               fosmid libraries were prepared at the Joint Genome Institute in Los
               Alamos (JGI-LANL), NM. Shotgun sequencing was performed at the JGI
               Production Genomics Facility (JGI-PGF) in Walnut Creek, CA. Draft
               assemblies were based on 246217 total reads. All libraries provided
               23x coverage of the genome.  The Phred/Phrap/Consed software
               package (www.phrap.com) was used for sequence assembly and quality
               assessment.  After the shotgun stage, reads were assembled with
               parallel phrap (High Performance Software, LLC). Possible
               mis-assemblies were corrected manually or by transposon bombing
               (Epicentre Biotechnologies) of bridging clones. Gaps between
               contigs were closed by editing in Consed, custom primer walk or PCR
               amplification. A total of 25321 additional reactions were necessary
               to close gaps and to raise the quality of the finished sequence.
               The completed genome sequence of B. thuringiensis Al Hakam achieves
               an average of 24-fold sequence coverage per base with error rate
               less than 1 in 100,000. Gene predictions were obtained using
               Glimmer and tRNAs were identified using tRNAScan-SE. Basic analysis
               of the gene predictions was performed by comparing coding sequences
               against the PFam, BLOCKS and Prodom databases. Gene definitions and
               functional classes were added manually by a team of annotators at
               JGI-LANL, using BLAST results in addition to information from the
               basic analysis.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
9309	10762	+	1454	118475778	BALH_r16S01	-	16S ribosomal RNA
10993	11072	+	80	118475778	BALH_tIle01	-	^{14 Ile tRNA}
11078	11156	+	79	118475778	BALH_tAla05	-	^{02 Ala tRNA}
11249	14159	+	2911	118475778	BALH_r23S01	-	23S ribosomal RNA
14206	14324	+	119	118475778	BALH_r5S01	-	5S ribosomal RNA
21776	21871	+	96	118475778	BALH_tSer05	-	^{08 Ser tRNA}
29109	30562	+	1454	118475778	BALH_r16S02	-	16S ribosomal RNA
30793	30872	+	80	118475778	BALH_tIle03	-	^{14 Ile tRNA}
30878	30956	+	79	118475778	BALH_tAla03	-	^{02 Ala tRNA}
31048	33958	+	2911	118475778	BALH_r23S02	-	23S ribosomal RNA
34005	34123	+	119	118475778	BALH_r5S02	-	5S ribosomal RNA
64436	64512	+	77	118475778	BALH_tMet02	-	^{16 Met tRNA}
64523	64597	+	75	118475778	BALH_tGlu06	-	^{04 Glu tRNA}
82434	83887	+	1454	118475778	BALH_r16S03	-	16S ribosomal RNA
84146	87057	+	2912	118475778	BALH_r23S03	-	23S ribosomal RNA
87158	87271	+	114	118475778	BALH_r5S03	-	5S ribosomal RNA
87277	87355	+	79	118475778	BALH_tVal07	-	^{13 Val tRNA}
87357	87435	+	79	118475778	BALH_tThr02	-	^{12 Thr tRNA}
87446	87524	+	79	118475778	BALH_tLys02	-	^{10 Lys tRNA}
87537	87620	+	84	118475778	BALH_tLeu08	-	^{15 Leu tRNA}
87647	87724	+	78	118475778	BALH_tGly03	-	^{01 Gly tRNA}
87738	87829	+	92	118475778	BALH_tLeu04	-	^{15 Leu tRNA}
87830	87906	+	77	118475778	BALH_tArg03	-	^{11 Arg tRNA}
87912	87988	+	77	118475778	BALH_tPro01	-	^{03 Pro tRNA}
87995	88073	+	79	118475778	BALH_tAla01	-	^{02 Ala tRNA}
88149	89602	+	1454	118475778	BALH_r16S04	-	16S ribosomal RNA
89861	92771	+	2911	118475778	BALH_r23S04	-	23S ribosomal RNA
92817	92935	+	119	118475778	BALH_r5S04	-	5S ribosomal RNA
151215	152668	+	1454	118475778	BALH_r16S05	-	16S ribosomal RNA
152927	155837	+	2911	118475778	BALH_r23S05	-	23S ribosomal RNA
155923	156036	+	114	118475778	BALH_r5S05	-	5S ribosomal RNA
156046	156123	+	78	118475778	BALH_tAsn02	-	^{07 Asn tRNA}
156125	156200	+	76	118475778	BALH_tThr05	-	^{12 Thr tRNA}
156222	156299	+	78	118475778	BALH_tGlu01	-	^{04 Glu tRNA}
156302	156380	+	79	118475778	BALH_tVal04	-	^{13 Val tRNA}
156395	156481	+	87	118475778	BALH_tTyr03	-	^{18 Tyr tRNA}
156544	156621	+	78	118475778	BALH_tGln02	-	^{05 Gln tRNA}
156624	156702	+	79	118475778	BALH_tLys03	-	^{10 Lys tRNA}
156705	156779	+	75	118475778	BALH_tGly01	-	^{01 Gly tRNA}
156787	156862	+	76	118475778	BALH_tAla02	-	^{02 Ala tRNA}
257007	257084	+	78	118475778	BALH_tAsn04	-	^{07 Asn tRNA}
257085	257178	+	94	118475778	BALH_tSer06	-	^{08 Ser tRNA}
257184	257261	+	78	118475778	BALH_tGlu02	-	^{04 Glu tRNA}
257263	257341	+	79	118475778	BALH_tVal03	-	^{13 Val tRNA}
257385	257463	+	79	118475778	BALH_tAsp02	-	^{06 Asp tRNA}
257548	257625	+	78	118475778	BALH_tGln03	-	^{05 Gln tRNA}
257628	257703	+	76	118475778	BALH_tLys06	-	^{10 Lys tRNA}
257717	257805	+	89	118475778	BALH_tLeu02	-	^{15 Leu tRNA}
257898	257977	+	80	118475778	BALH_tArg02	-	^{11 Arg tRNA}
257979	258058	+	80	118475778	BALH_tPro02	-	^{03 Pro tRNA}
258057	258130	+	74	118475778	BALH_tGly09	-	^{01 Gly tRNA}
258204	259647	+	1444	118475778	BALH_r16S06	-	16S ribosomal RNA
259915	262825	+	2911	118475778	BALH_r23S06	-	23S ribosomal RNA
262872	262990	+	119	118475778	BALH_r5S06	-	5S ribosomal RNA
263000	263079	+	80	118475778	BALH_tMet08	-	^{16 Met tRNA}
263080	263158	+	79	118475778	BALH_tAsp05	-	^{06 Asp tRNA}
287745	289198	+	1454	118475778	BALH_r16S07	-	16S ribosomal RNA
289458	292369	+	2912	118475778	BALH_r23S07	-	23S ribosomal RNA
292415	292533	+	119	118475778	BALH_r5S07	-	5S ribosomal RNA
294991	296444	+	1454	118475778	BALH_r16S08	-	16S ribosomal RNA
296701	299611	+	2911	118475778	BALH_r23S08	-	23S ribosomal RNA
299658	299776	+	119	118475778	BALH_r5S08	-	5S ribosomal RNA
302303	303756	+	1454	118475778	BALH_r16S09	-	16S ribosomal RNA
304015	306925	+	2911	118475778	BALH_r23S09	-	23S ribosomal RNA
306973	307091	+	119	118475778	BALH_r5S09	-	5S ribosomal RNA
312307	313760	+	1454	118475778	BALH_r16S10	-	16S ribosomal RNA
314019	316929	+	2911	118475778	BALH_r23S10	-	23S ribosomal RNA
316977	317095	+	119	118475778	BALH_r5S10	-	5S ribosomal RNA
319482	320935	+	1454	118475778	BALH_r16S11	-	16S ribosomal RNA
321193	324103	+	2911	118475778	BALH_r23S11	-	23S ribosomal RNA
324151	324269	+	119	118475778	BALH_r5S11	-	5S ribosomal RNA
534455	535897	+	1443	118475778	BALH_r16S12	-	16S ribosomal RNA
536166	539078	+	2913	118475778	BALH_r23S12	-	23S ribosomal RNA
539178	539291	+	114	118475778	BALH_r5S12	-	5S ribosomal RNA
539300	539377	+	78	118475778	BALH_tAsn05	-	^{07 Asn tRNA}
539377	539471	+	95	118475778	BALH_tSer01	-	^{08 Ser tRNA}
539486	539563	+	78	118475778	BALH_tGlu03	-	^{04 Glu tRNA}
539566	539644	+	79	118475778	BALH_tVal05	-	^{13 Val tRNA}
539666	539745	+	80	118475778	BALH_tMet01	-	^{16 Met tRNA}
539746	539824	+	79	118475778	BALH_tAsp03	-	^{06 Asp tRNA}
539831	539909	+	79	118475778	BALH_tPhe01	-	^{17 Phe tRNA}
539925	540003	+	79	118475778	BALH_tThr04	-	^{12 Thr tRNA}
540011	540097	+	87	118475778	BALH_tTyr01	-	^{18 Tyr tRNA}
540102	540178	+	77	118475778	BALH_tTrp02	-	^{20 Trp tRNA}
540195	540273	+	79	118475778	BALH_tHis02	-	^{09 His tRNA}
540334	540411	+	78	118475778	BALH_tGln01	-	^{05 Gln tRNA}
540414	540491	+	78	118475778	BALH_tGly05	-	^{01 Gly tRNA}
540503	540576	+	74	118475778	BALH_tCys01	-	^{19 Cys tRNA}
540584	540671	+	88	118475778	BALH_tLeu06	-	^{15 Leu tRNA}
552778	552854	+	77	118475778	BALH_tGly08	-	^{01 Gly tRNA}
761982	763435	+	1454	118475778	BALH_r16S13	-	16S ribosomal RNA
763694	766604	+	2911	118475778	BALH_r23S13	-	23S ribosomal RNA
766706	766819	+	114	118475778	BALH_r5S13	-	5S ribosomal RNA
766825	766903	+	79	118475778	BALH_tVal02	-	^{13 Val tRNA}
766909	766995	+	87	118475778	BALH_tTyr02	-	^{18 Tyr tRNA}
767004	767081	+	78	118475778	BALH_tGln04	-	^{05 Gln tRNA}
767083	767161	+	79	118475778	BALH_tLys04	-	^{10 Lys tRNA}
767173	767256	+	84	118475778	BALH_tLeu01	-	^{15 Leu tRNA}
767283	767360	+	78	118475778	BALH_tGly10	-	^{01 Gly tRNA}
767374	767465	+	92	118475778	BALH_tLeu05	-	^{15 Leu tRNA}
767466	767542	+	77	118475778	BALH_tArg01	-	^{11 Arg tRNA}
767550	767626	+	77	118475778	BALH_tPro04	-	^{03 Pro tRNA}
767640	767715	+	76	118475778	BALH_tAla06	-	^{02 Ala tRNA}
767733	767828	+	96	118475778	BALH_tSer03	-	^{08 Ser tRNA}
767881	767976	+	96	118475778	BALH_tSer07	-	^{08 Ser tRNA}
768001	768080	+	80	118475778	BALH_tMet07	-	^{16 Met tRNA}
768081	768159	+	79	118475778	BALH_tAsp04	-	^{06 Asp tRNA}
768165	768243	+	79	118475778	BALH_tPhe03	-	^{17 Phe tRNA}
768250	768325	+	76	118475778	BALH_tThr01	-	^{12 Thr tRNA}
768329	768402	+	74	118475778	BALH_tTrp01	-	^{20 Trp tRNA}
768410	768489	+	80	118475778	BALH_tIle04	-	^{14 Ile tRNA}
768497	768574	+	78	118475778	BALH_tAsn01	-	^{07 Asn tRNA}
768573	768647	+	75	118475778	BALH_tGlu04	-	^{04 Glu tRNA}
1292399	1292474	-	76	118475778	BALH_tVal01	-	^{13 Val tRNA}
4081628	4081704	-	77	118475778	BALH_tMet06	-	^{16 Met tRNA}
4294665	4294741	-	77	118475778	BALH_tGly02	-	^{01 Gly tRNA}
4666220	4666294	-	75	118475778	BALH_tGlu07	-	^{04 Glu tRNA}
4666298	4666391	-	94	118475778	BALH_tSer04	-	^{08 Ser tRNA}
4666396	4666473	-	78	118475778	BALH_tAsn03	-	^{07 Asn tRNA}
4666478	4666557	-	80	118475778	BALH_tIle02	-	^{14 Ile tRNA}
4666565	4666638	-	74	118475778	BALH_tGly07	-	^{01 Gly tRNA}
4666649	4666727	-	79	118475778	BALH_tLys05	-	^{10 Lys tRNA}
4666735	4666813	-	79	118475778	BALH_tThr03	-	^{12 Thr tRNA}
4666825	4666903	-	79	118475778	BALH_tPhe04	-	^{17 Phe tRNA}
4666913	4666991	-	79	118475778	BALH_tAsp01	-	^{06 Asp tRNA}
4666990	4667069	-	80	118475778	BALH_tMet04	-	^{16 Met tRNA}
4667094	4667189	-	96	118475778	BALH_tSer02	-	^{08 Ser tRNA}
4667204	4667283	-	80	118475778	BALH_tMet03	-	^{16 Met tRNA}
4667285	4667364	-	80	118475778	BALH_tMet05	-	^{16 Met tRNA}
4667382	4667458	-	77	118475778	BALH_tAla04	-	^{02 Ala tRNA}
4667472	4667548	-	77	118475778	BALH_tPro03	-	^{03 Pro tRNA}
4667556	4667632	-	77	118475778	BALH_tArg05	-	^{11 Arg tRNA}
4667633	4667724	-	92	118475778	BALH_tLeu03	-	^{15 Leu tRNA}
4667738	4667815	-	78	118475778	BALH_tGly06	-	^{01 Gly tRNA}
4667842	4667925	-	84	118475778	BALH_tLeu07	-	^{15 Leu tRNA}
4667945	4668023	-	79	118475778	BALH_tHis01	-	^{09 His tRNA}
4668030	4668108	-	79	118475778	BALH_tThr06	-	^{12 Thr tRNA}
4668110	4668188	-	79	118475778	BALH_tVal06	-	^{13 Val tRNA}
4668193	4668306	-	114	118475778	BALH_r5S14	-	5S ribosomal RNA
4668407	4671317	-	2911	118475778	BALH_r23S014	-	23S ribosomal RNA
4671585	4673028	-	1444	118475778	BALH_r16S14	-	16S ribosomal RNA
4880556	4880634	-	79	118475778	BALH_tArg04	-	^{11 Arg tRNA}
5236468	5236543	-	76	118475778	BALH_tPhe02	-	^{17 Phe tRNA}
5236582	5236660	-	79	118475778	BALH_tAsp06	-	^{06 Asp tRNA}
5236679	5236753	-	75	118475778	BALH_tGlu05	-	^{04 Glu tRNA}
5236764	5236842	-	79	118475778	BALH_tLys01	-	^{10 Lys tRNA}