Геном прокариот/Материалы:NC 008610

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008610            1160782 bp    DNA     circular BCT 26-FEB-2007
   DEFINITION  Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),
               complete genome.
   ACCESSION   NC_008610
   VERSION     NC_008610.1  GI:118602060
   KEYWORDS    .
   SOURCE      Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
     ORGANISM  Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
               Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing
               symbionts.
   REFERENCE   1  (bases 1 to 1160782)
     AUTHORS   Newton,I.L., Woyke,T., Auchtung,T.A., Dilly,G.F., Dutton,R.J.,
               Fisher,M.C., Fontanez,K.M., Lau,E., Stewart,F.J., Richardson,P.M.,
               Barry,K.W., Saunders,E., Detter,J.C., Wu,D., Eisen,J.A. and
               Cavanaugh,C.M.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     The Calyptogena magnifica chemoautotrophic symbiont genome
     JOURNAL   Science 315 (5814), 998-1000 (2007)
      PUBMED   17303757
   REFERENCE   2  (bases 1 to 1160782)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1160782)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Saunders,E.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (29-NOV-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000488.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000245
               Source DNA and bacteria available from Colleen M. Cavanaugh
               (cavanaug@fas.harvard.edu)
               Contacts: Colleen M. Cavanaugh (cavanaug@fas.harvard.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
47921	47996	+	76	118602060	Rmag_R0001	-	^{12 Thr tRNA}
53269	53344	+	76	118602060	Rmag_R0002	-	^{17 Phe tRNA}
60338	60414	+	77	118602060	Rmag_R0003	-	^{16 Met tRNA}
71406	71482	+	77	118602060	Rmag_R0004	-	^{16 Met tRNA}
127740	127816	-	77	118602060	Rmag_R0005	-	^{16 Met tRNA}
130754	130828	-	75	118602060	Rmag_R0006	-	^{05 Gln tRNA}
177719	177792	-	74	118602060	Rmag_R0007	-	^{19 Cys tRNA}
177865	177940	-	76	118602060	Rmag_R0008	-	^{01 Gly tRNA}
178612	178688	-	77	118602060	Rmag_R0009	-	^{11 Arg tRNA}
295585	295671	+	87	118602060	Rmag_R0010	-	^{15 Leu tRNA}
355140	355215	+	76	118602060	Rmag_R0011	-	^{02 Ala tRNA}
355237	355311	+	75	118602060	Rmag_R0012	-	^{04 Glu tRNA}
355375	355449	+	75	118602060	Rmag_R0013	-	^{04 Glu tRNA}
440344	440419	-	76	118602060	Rmag_R0014	-	^{09 His tRNA}
442219	442295	-	77	118602060	Rmag_R0015	-	^{11 Arg tRNA}
442344	442420	-	77	118602060	Rmag_R0016	-	^{03 Pro tRNA}
463030	463105	+	76	118602060	Rmag_R0017	-	^{07 Asn tRNA}
470448	470524	-	77	118602060	Rmag_R0018	-	^{11 Arg tRNA}
471419	471495	+	77	118602060	Rmag_R0019	-	^{13 Val tRNA}
514527	514641	-	115	118602060	Rmag_R0020	-	SRP RNA; RNA component of signal recognition particle
621148	621235	-	88	118602060	Rmag_R0021	-	^{08 Ser tRNA}
645473	645548	-	76	118602060	Rmag_R0022	-	^{10 Lys tRNA}
672337	672413	-	77	118602060	Rmag_R0023	-	^{11 Arg tRNA}
688967	689043	-	77	118602060	Rmag_R0024	-	^{03 Pro tRNA}
708434	708510	-	77	118602060	Rmag_R0025	-	^{06 Asp tRNA}
708521	708596	-	76	118602060	Rmag_R0026	-	^{13 Val tRNA}
840670	840959	-	290	118602060	Rmag_R0027	-	RNA component of RNaseP
873976	874051	-	76	118602060	Rmag_R0028	-	^{20 Trp tRNA}
875358	875433	-	76	118602060	Rmag_R0029	-	^{12 Thr tRNA}
875449	875522	-	74	118602060	Rmag_R0030	-	^{01 Gly tRNA}
875540	875624	-	85	118602060	Rmag_R0031	-	^{18 Tyr tRNA}
893674	893765	+	92	118602060	Rmag_R0032	-	^{08 Ser tRNA}
909057	909141	-	85	118602060	Rmag_R0033	-	^{15 Leu tRNA}
989716	989802	+	87	118602060	Rmag_R0034	-	^{15 Leu tRNA}
1058349	1058438	+	90	118602060	Rmag_R0035	-	^{08 Ser tRNA}
1077264	1077379	-	116	118602060	Rmag_R0036	-	5S ribosomal RNA
1077544	1080173	-	2630	118602060	Rmag_R0037	-	23S ribosomal RNA
1080775	1080850	-	76	118602060	Rmag_R0038	-	^{02 Ala tRNA}
1080975	1081051	-	77	118602060	Rmag_R0039	-	^{14 Ile tRNA}
1081270	1082807	-	1538	118602060	Rmag_R0040	-	16S ribosomal RNA
1159047	1159132	-	86	118602060	Rmag_R0041	-	^{15 Leu tRNA}