Геном прокариот/Материалы:NC 008639

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008639            3133902 bp    DNA     circular BCT 12-DEC-2006
   DEFINITION  Chlorobium phaeobacteroides DSM 266, complete genome.
   ACCESSION   NC_008639
   VERSION     NC_008639.1  GI:119355857
   KEYWORDS    .
   SOURCE      Chlorobium phaeobacteroides DSM 266
     ORGANISM  Chlorobium phaeobacteroides DSM 266
               Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae;
               Chlorobium/Pelodictyon group; Chlorobium.
   REFERENCE   1  (bases 1 to 3133902)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T.,
               Overmann,J., Bryant,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chlorobium phaeobacteroides DSM 266
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3133902)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3133902)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T.,
               Overmann,J., Bryant,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (05-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000492.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634474
               Source DNA and bacteria available from Donald A. Bryant
               (dab14@psu.edu)
               Bacteria available from DSMZ: DSM 266
               Contacts: Donald A. Bryant (dab14@psu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
51893	51965	-	73	119355857	Cpha266_R0001	-	^{12 Thr tRNA}
193926	194001	-	76	119355857	Cpha266_R0002	-	^{11 Arg tRNA}
252936	253008	+	73	119355857	Cpha266_R0003	-	^{12 Thr tRNA}
253022	253104	+	83	119355857	Cpha266_R0004	-	^{18 Tyr tRNA}
253131	253203	+	73	119355857	Cpha266_R0005	-	^{12 Thr tRNA}
253227	253302	+	76	119355857	Cpha266_R0006	-	^{20 Trp tRNA}
337928	338001	+	74	119355857	Cpha266_R0007	-	^{03 Pro tRNA}
366885	366973	-	89	119355857	Cpha266_R0008	-	^{15 Leu tRNA}
436026	436098	+	73	119355857	Cpha266_R0009	-	^{10 Lys tRNA}
436115	436196	+	82	119355857	Cpha266_R0010	-	^{15 Leu tRNA}
473467	473542	+	76	119355857	Cpha266_R0011	-	^{17 Phe tRNA}
713392	713468	+	77	119355857	Cpha266_R0012	-	^{13 Val tRNA}
918432	918507	-	76	119355857	Cpha266_R0013	-	^{05 Gln tRNA}
919497	919570	-	74	119355857	Cpha266_R0014	-	^{11 Arg tRNA}
919575	919651	-	77	119355857	Cpha266_R0015	-	^{04 Glu tRNA}
919687	919760	-	74	119355857	Cpha266_R0016	-	^{16 Met tRNA}
1009928	1010327	+	400	119355857	Cpha266_R0017	-	tmRNA
1048324	1048398	+	75	119355857	Cpha266_R0018	-	^{05 Gln tRNA}
1053155	1053227	+	73	119355857	Cpha266_R0019	-	^{03 Pro tRNA}
1053256	1053331	+	76	119355857	Cpha266_R0020	-	^{11 Arg tRNA}
1053357	1053430	+	74	119355857	Cpha266_R0021	-	^{09 His tRNA}
1053442	1053513	+	72	119355857	Cpha266_R0022	-	^{04 Glu tRNA}
1059928	1060003	+	76	119355857	Cpha266_R0023	-	^{10 Lys tRNA}
1099660	1099746	-	87	119355857	Cpha266_R0024	-	^{15 Leu tRNA}
1099807	1099888	-	82	119355857	Cpha266_R0025	-	^{15 Leu tRNA}
1150601	1150676	-	76	119355857	Cpha266_R0026	-	^{16 Met tRNA}
1327970	1328042	+	73	119355857	Cpha266_R0027	-	^{11 Arg tRNA}
1328059	1328131	+	73	119355857	Cpha266_R0028	-	^{03 Pro tRNA}
1663969	1664045	+	77	119355857	Cpha266_R0029	-	^{13 Val tRNA}
1719488	1719561	+	74	119355857	Cpha266_R0030	-	^{19 Cys tRNA}
1850219	1850311	-	93	119355857	Cpha266_R0031	-	^{08 Ser tRNA}
1850324	1850409	-	86	119355857	Cpha266_R0032	-	^{08 Ser tRNA}
1850607	1850697	-	91	119355857	Cpha266_R0033	-	^{08 Ser tRNA}
1872397	1872470	+	74	119355857	Cpha266_R0034	-	^{16 Met tRNA}
1872482	1872557	+	76	119355857	Cpha266_R0035	-	^{01 Gly tRNA}
1953685	1953769	+	85	119355857	Cpha266_R0036	-	^{15 Leu tRNA}
1954821	1955167	+	347	119355857	Cpha266_R0037	-	RNaseP RNA
2254342	2254414	+	73	119355857	Cpha266_R0038	-	^{01 Gly tRNA}
2254640	2254729	+	90	119355857	Cpha266_R0039	-	^{08 Ser tRNA}
2296966	2297038	+	73	119355857	Cpha266_R0040	-	^{02 Ala tRNA}
2417293	2417367	+	75	119355857	Cpha266_R0041	-	^{06 Asp tRNA}
2793075	2793147	-	73	119355857	Cpha266_R0042	-	^{01 Gly tRNA}
2855225	2855296	-	72	119355857	Cpha266_R0043	-	^{07 Asn tRNA}
2895049	2895158	-	110	119355857	Cpha266_R0044	-	5S ribosomal RNA
2895264	2898182	-	2919	119355857	Cpha266_R0045	-	23S ribosomal RNA
2898388	2898463	-	76	119355857	Cpha266_R0046	-	^{02 Ala tRNA}
2898497	2898573	-	77	119355857	Cpha266_R0047	-	^{14 Ile tRNA}
2898750	2900243	-	1494	119355857	Cpha266_R0048	-	16S ribosomal RNA
3047185	3047294	-	110	119355857	Cpha266_R0049	-	5S ribosomal RNA
3047399	3050317	-	2919	119355857	Cpha266_R0050	-	23S ribosomal RNA
3050523	3050598	-	76	119355857	Cpha266_R0051	-	^{02 Ala tRNA}
3050632	3050708	-	77	119355857	Cpha266_R0052	-	^{14 Ile tRNA}
3050885	3052378	-	1494	119355857	Cpha266_R0053	-	16S ribosomal RNA
3074175	3074248	-	74	119355857	Cpha266_R0054	-	^{13 Val tRNA}
3092183	3092288	-	106	119355857	Cpha266_R0055	-	SRP RNA; RNA component of signal recognition particle
3098078	3098150	-	73	119355857	Cpha266_R0056	-	^{02 Ala tRNA}