Геном прокариот/Материалы:NC 008686

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008686            2852282 bp    DNA     circular BCT 09-AUG-2007
   DEFINITION  Paracoccus denitrificans PD1222 chromosome 1, complete sequence.
   ACCESSION   NC_008686
   VERSION     NC_008686.1  GI:119382757
   KEYWORDS    .
   SOURCE      Paracoccus denitrificans PD1222
     ORGANISM  Paracoccus denitrificans PD1222
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Paracoccus.
   REFERENCE   1  (bases 1 to 2852282)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Lykidis,A., Spiro,S., Richardson,D.J., Moir,J.W.B., Ferguson,S.J.,
               van Spanning,R.J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome 1 of Paracoccus denitrificans
               PD1222
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2852282)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2852282)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Lykidis,A., Spiro,S., Richardson,D.J., Moir,J.W.B., Ferguson,S.J.,
               van Spanning,R.J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (04-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000489.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634481
               Source DNA and bacteria available from Stephen Spiro
               (stephen.spiro@utdallas.edu)
               Contacts: Stephen Spiro (stephen.spiro@utdallas.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               There is an unverified repetitive structure in the vicinity of
               complement(2413304-2418104)
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
48588	48662	-	75	119382757	Pden_R0001	-	^{13 Val tRNA}
58447	59902	+	1456	119382757	Pden_R0002	-	16S ribosomal RNA
60071	60147	+	77	119382757	Pden_R0003	-	^{14 Ile tRNA}
60210	60285	+	76	119382757	Pden_R0004	-	^{02 Ala tRNA}
60609	63451	+	2843	119382757	Pden_R0005	-	23S ribosomal RNA
63561	63682	+	122	119382757	Pden_R0006	-	5S ribosomal RNA
63740	63816	+	77	119382757	Pden_R0007	-	^{16 Met tRNA}
361057	361146	+	90	119382757	Pden_R0008	-	^{08 Ser tRNA}
364942	365017	-	76	119382757	Pden_R0009	-	^{10 Lys tRNA}
411262	411338	+	77	119382757	Pden_R0010	-	^{03 Pro tRNA}
466890	466974	+	85	119382757	Pden_R0011	-	^{15 Leu tRNA}
506103	506176	-	74	119382757	Pden_R0012	-	^{01 Gly tRNA}
722941	723016	+	76	119382757	Pden_R0013	-	^{20 Trp tRNA}
848876	848952	+	77	119382757	Pden_R0014	-	^{03 Pro tRNA}
857717	857793	-	77	119382757	Pden_R0015	-	^{11 Arg tRNA}
894322	894398	+	77	119382757	Pden_R0016	-	^{16 Met tRNA}
948593	948682	+	90	119382757	Pden_R0017	-	^{08 Ser tRNA}
1178499	1178575	+	77	119382757	Pden_R0018	-	^{06 Asp tRNA}
1195017	1195091	-	75	119382757	Pden_R0019	-	^{05 Gln tRNA}
1274404	1274493	-	90	119382757	Pden_R0020	-	^{08 Ser tRNA}
1343520	1343603	-	84	119382757	Pden_R0021	-	^{15 Leu tRNA}
1523471	1523547	-	77	119382757	Pden_R0022	-	^{09 His tRNA}
1565680	1565769	+	90	119382757	Pden_R0023	-	^{08 Ser tRNA}
1725856	1725931	+	76	119382757	Pden_R0024	-	^{02 Ala tRNA}
1747394	1747494	+	101	119382757	Pden_R0025	-
1761801	1761875	+	75	119382757	Pden_R0026	-	^{07 Asn tRNA}
1769711	1769785	-	75	119382757	Pden_R0027	-	^{04 Glu tRNA}
1771692	1771765	-	74	119382757	Pden_R0028	-	^{01 Gly tRNA}
1786959	1787034	+	76	119382757	Pden_R0029	-	^{17 Phe tRNA}
1788974	1789050	-	77	119382757	Pden_R0030	-	^{11 Arg tRNA}
1806275	1806376	+	102	119382757	Pden_R0031	-	SRP RNA; RNA component of signal recognition particle
1863668	1863745	+	78	119382757	Pden_R0032	-	^{03 Pro tRNA}
1879838	1879912	+	75	119382757	Pden_R0033	-	^{04 Glu tRNA}
1907794	1907870	-	77	119382757	Pden_R0034	-	^{06 Asp tRNA}
1907899	1907975	-	77	119382757	Pden_R0035	-	^{06 Asp tRNA}
1931540	1931626	-	87	119382757	Pden_R0036	-	^{15 Leu tRNA}
1965201	1965275	+	75	119382757	Pden_R0037	-	^{12 Thr tRNA}
1974456	1974532	-	77	119382757	Pden_R0038	-	^{16 Met tRNA}
1974590	1974711	-	122	119382757	Pden_R0039	-	5S ribosomal RNA
1974821	1977663	-	2843	119382757	Pden_R0040	-	23S ribosomal RNA
1977987	1978062	-	76	119382757	Pden_R0041	-	^{02 Ala tRNA}
1978125	1978201	-	77	119382757	Pden_R0042	-	^{14 Ile tRNA}
1978370	1979825	-	1456	119382757	Pden_R0043	-	16S ribosomal RNA
1982093	1982169	-	77	119382757	Pden_R0044	-	^{11 Arg tRNA}
2000687	2000762	-	76	119382757	Pden_R0045	-	^{12 Thr tRNA}
2057161	2057246	+	86	119382757	Pden_R0046	-	^{15 Leu tRNA}
2281331	2281406	-	76	119382757	Pden_R0047	-	^{16 Met tRNA}
2341732	2341807	-	76	119382757	Pden_R0048	-	^{02 Ala tRNA}
2387713	2387787	+	75	119382757	Pden_R0049	-	^{01 Gly tRNA}
2423242	2423315	+	74	119382757	Pden_R0050	-	^{19 Cys tRNA}
2841537	2841628	-	92	119382757	Pden_R0051	-	Sec tRNA