Геном прокариот/Материалы:NC 008740

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008740            4326849 bp    DNA     circular BCT 03-JAN-2007
   DEFINITION  Marinobacter aquaeolei VT8, complete genome.
   ACCESSION   NC_008740
   VERSION     NC_008740.1  GI:120552944
   KEYWORDS    .
   SOURCE      Marinobacter aquaeolei VT8
     ORGANISM  Marinobacter aquaeolei VT8
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Alteromonadaceae; Marinobacter.
   REFERENCE   1  (bases 1 to 4326849)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Edwards,K. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Marinobacter aquaeolei VT8
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4326849)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4326849)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Edwards,K. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (15-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000514.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3640420
               Source DNA and bacteria available from Katrina Edwards
               (katrina@whoi.edu)
               Contacts: Katrina Edwards (katrina@whoi.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
56383	56459	-	77	120552944	Maqu_R0001	-	^{03 Pro tRNA}
150110	150183	+	74	120552944	Maqu_R0003	-	^{01 Gly tRNA}
510275	510351	-	77	120552944	Maqu_R0004	-	^{11 Arg tRNA}
756777	756853	-	77	120552944	Maqu_R0005	-	^{16 Met tRNA}
798762	800294	+	1533	120552944	Maqu_R0006	-	16S ribosomal RNA
800385	800461	+	77	120552944	Maqu_R0007	-	^{14 Ile tRNA}
800558	800633	+	76	120552944	Maqu_R0008	-	^{02 Ala tRNA}
800946	803845	+	2900	120552944	Maqu_R0009	-	23S ribosomal RNA
803936	804050	+	115	120552944	Maqu_R0010	-	5S ribosomal RNA
812163	812238	+	76	120552944	Maqu_R0011	-	^{12 Thr tRNA}
812279	812362	+	84	120552944	Maqu_R0012	-	^{18 Tyr tRNA}
812373	812447	+	75	120552944	Maqu_R0013	-	^{01 Gly tRNA}
812461	812536	+	76	120552944	Maqu_R0014	-	^{12 Thr tRNA}
813831	813906	+	76	120552944	Maqu_R0015	-	^{20 Trp tRNA}
1010143	1011675	+	1533	120552944	Maqu_R0016	-	16S ribosomal RNA
1011766	1011842	+	77	120552944	Maqu_R0017	-	^{14 Ile tRNA}
1011939	1012014	+	76	120552944	Maqu_R0018	-	^{02 Ala tRNA}
1012327	1015226	+	2900	120552944	Maqu_R0019	-	23S ribosomal RNA
1015317	1015431	+	115	120552944	Maqu_R0020	-	5S ribosomal RNA
1102583	1102672	+	90	120552944	Maqu_R0021	-	^{08 Ser tRNA}
1102728	1102804	+	77	120552944	Maqu_R0022	-	^{11 Arg tRNA}
1102825	1102901	+	77	120552944	Maqu_R0023	-	^{11 Arg tRNA}
1179960	1180035	-	76	120552944	Maqu_R0024	-	^{07 Asn tRNA}
1194480	1194555	-	76	120552944	Maqu_R0025	-	^{07 Asn tRNA}
1264200	1264286	+	87	120552944	Maqu_R0026	-	^{15 Leu tRNA}
1289988	1290063	-	76	120552944	Maqu_R0027	-	^{04 Glu tRNA}
1293119	1293194	+	76	120552944	Maqu_R0028	-	^{01 Gly tRNA}
1346647	1346737	+	91	120552944	Maqu_R0029	-	^{08 Ser tRNA}
1364693	1364768	+	76	120552944	Maqu_R0030	-	^{01 Gly tRNA}
1364826	1364899	+	74	120552944	Maqu_R0031	-	^{19 Cys tRNA}
1387007	1387082	+	76	120552944	Maqu_R0032	-	^{10 Lys tRNA}
1646427	1646513	-	87	120552944	Maqu_R0033	-	^{15 Leu tRNA}
1697255	1697345	-	91	120552944	Maqu_R0034	-	^{08 Ser tRNA}
1808165	1808281	-	117	120552944	Maqu_R0035	-	SRP RNA; RNA component of signal recognition particle
1890385	1890461	+	77	120552944	Maqu_R0036	-	^{13 Val tRNA}
1902341	1902416	-	76	120552944	Maqu_R0037	-	^{10 Lys tRNA}
1902479	1902554	-	76	120552944	Maqu_R0038	-	^{10 Lys tRNA}
2054975	2055059	-	85	120552944	Maqu_R0039	-	^{15 Leu tRNA}
2055125	2055200	-	76	120552944	Maqu_R0040	-	^{09 His tRNA}
2055289	2055365	-	77	120552944	Maqu_R0041	-	^{11 Arg tRNA}
2055398	2055474	-	77	120552944	Maqu_R0042	-	^{03 Pro tRNA}
2108604	2108679	-	76	120552944	Maqu_R0043	-	^{04 Glu tRNA}
2108687	2108762	-	76	120552944	Maqu_R0044	-	^{02 Ala tRNA}
2245808	2245884	-	77	120552944	Maqu_R0045	-	^{16 Met tRNA}
2249039	2249114	-	76	120552944	Maqu_R0046	-	^{13 Val tRNA}
2249124	2249200	-	77	120552944	Maqu_R0047	-	^{06 Asp tRNA}
2249243	2249318	-	76	120552944	Maqu_R0048	-	^{13 Val tRNA}
2284543	2284619	+	77	120552944	Maqu_R0049	-	^{03 Pro tRNA}
2321701	2321777	-	77	120552944	Maqu_R0050	-	^{06 Asp tRNA}
2642057	2642131	+	75	120552944	Maqu_R0051	-	^{05 Gln tRNA}
2645817	2645893	+	77	120552944	Maqu_R0052	-	^{16 Met tRNA}
2667985	2668071	+	87	120552944	Maqu_R0053	-	^{15 Leu tRNA}
2749391	2749688	-	298	120552944	Maqu_R0054	-	rnpB RNA
2764145	2764259	-	115	120552944	Maqu_R0055	-	5S ribosomal RNA
2764350	2767249	-	2900	120552944	Maqu_R0056	-	23S ribosomal RNA
2767562	2767637	-	76	120552944	Maqu_R0057	-	^{02 Ala tRNA}
2767860	2767936	-	77	120552944	Maqu_R0058	-	^{14 Ile tRNA}
2768183	2769715	-	1533	120552944	Maqu_R0059	-	16S ribosomal RNA
2810170	2810246	+	77	120552944	Maqu_R0060	-	^{11 Arg tRNA}
2836249	2836325	-	77	120552944	Maqu_R0061	-	^{16 Met tRNA}
3518381	3518456	+	76	120552944	Maqu_R0062	-	^{17 Phe tRNA}
3706599	3706683	-	85	120552944	Maqu_R0063	-	^{15 Leu tRNA}
3730537	3730899	+	363	120552944	Maqu_R0064	-