Геном прокариот/Материалы:NC 009138

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009138            3424307 bp    DNA     circular BCT 26-MAR-2007
   DEFINITION  Herminiimonas arsenicoxydans, complete genome.
   ACCESSION   NC_009138
   VERSION     NC_009138.1  GI:134093294
   KEYWORDS    .
   SOURCE      Herminiimonas arsenicoxydans
     ORGANISM  Herminiimonas arsenicoxydans
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Oxalobacteraceae; Herminiimonas.
   REFERENCE   1  (bases 1 to 3424307)
     AUTHORS   Muller,D., Medigue,C., Koechler,S., Barbe,V., Barakat,M., Talla,E.,
               Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M.,
               Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M.,
               Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S.,
               Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,N.,
               Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van
               Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and
               Bertin,P.N.
     TITLE     A Tale of Two Oxidation States: Bacterial Colonization of
               Arsenic-Rich Environments
     JOURNAL   Plos Genet. (2007) In press
     REMARK    Annotation data relative to BLAST similarities, COG assignations,
               enzymatic function prediction (PRIAM software), TMHMM and SignalP
               predictions, and synteny results (Syntonizer software) are
               available in ArsenoScope database via the MaGe annotation system
               http://www.genoscope.cns.fr/agc/mage. Each annotation includes a
               confidence level as follow: 1 : Function experimentally
               demonstrated in the studied organism 2a : Function of homologous
               gene experimentally demonstrated in an other organism 2b : Function
               of strongly homologous gene 3 : Function proposed based on presence
               of conserved amino acid motif, structural feature or limited
               homology 4 : Homologs of previously reported genes of unknown
               function 5 : No homology to any previously reported sequences 6 :
               Doubtful CDS 7 : Gene remnant
   REFERENCE   2  (bases 1 to 3424307)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-MAR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3424307)
     AUTHORS   Genoscope.
     TITLE     Direct Submission
     JOURNAL   Submitted (12-MAR-2007) Genoscope - Centre National de Sequencage :
               BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
               - Web : www.genoscope.cns.fr)
     REMARK    1: UMR7156 CNRS & Universite Louis Pasteur, Strasbourg, France 2:
               Genoscope, UMR8030 CNRS, Evry Cedex, France 3: UMR6191 CNRS, CEA &
               Universite Aix-Marseille II, Saint-Paul-lez-Durance, France 4:
               UPR9043 CNRS, Marseille, France 5: URA2171, Institut Pasteur,
               Paris, France 6: UMR7509 CNRS & Universite Louis Pasteur,
               Strasbourg, France 7: UMR5100 CNRS, Toulouse, France 8: UMR5557
               CNRS & Universite Claude Bernard - Lyon 1, Villeurbanne, France 9:
               UPR9036 CNRS, Marseille, France 10: UMR7517 CNRS & Universite Louis
               Pasteur, Strasbourg, France
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CU207211.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
30881	30982	+	102	134093294	HEARmisc_RNA_5	-	THI
189743	189818	-	76	134093294	HEARtRNA45	-	^{17 Phe tRNA}
202826	204361	+	1536	134093294	HEAR_16s_1	-	ribosomal RNA 16s
204476	204552	+	77	134093294	HEARtRNA1	-	^{14 Ile tRNA}
204573	204648	+	76	134093294	HEARtRNA2	-	^{02 Ala tRNA}
204951	207824	+	2874	134093294	HEAR_23s_1	-	ribosomal RNA 23s
207986	208103	+	118	134093294	HEAR_5s_1	-	ribosomal RNA 5s
208366	208441	+	76	134093294	HEARtRNA3	-	^{12 Thr tRNA}
328955	329062	+	108	134093294	HEARmisc_RNA_6	-	THI
401229	401305	-	77	134093294	HEARtRNA44	-	^{16 Met tRNA}
442449	442527	+	79	134093294	HEARtRNA4	-	^{16 Met tRNA}
575061	576596	+	1536	134093294	HEAR_16s_2	-	ribosomal RNA 16s
576711	576787	+	77	134093294	HEARtRNA5	-	^{14 Ile tRNA}
576808	576883	+	76	134093294	HEARtRNA6	-	^{02 Ala tRNA}
577186	580059	+	2874	134093294	HEAR_23s_2	-	ribosomal RNA 23s
580220	580337	+	118	134093294	HEAR_5s_2	-	ribosomal RNA 5s
595078	595154	+	77	134093294	HEARtRNA7	-	^{03 Pro tRNA}
701789	701873	-	85	134093294	HEARtRNA43	-	^{15 Leu tRNA}
922503	922578	-	76	134093294	HEARtRNA42	-	^{09 His tRNA}
927702	927792	+	91	134093294	HEARtRNA8	-	^{08 Ser tRNA}
943445	943547	-	103	134093294	HEARmisc_RNA_7	-	THI
987457	987532	+	76	134093294	HEARtRNA9	-	^{02 Ala tRNA}
987571	987646	+	76	134093294	HEARtRNA10	-	^{04 Glu tRNA}
1004873	1004950	+	78	134093294	HEARmisc_RNA_3	-	Intron_gpII
1036677	1036766	+	90	134093294	HEARtRNA11	-	^{08 Ser tRNA}
1052801	1052902	+	102	134093294	HEARmisc_RNA_1	-	putative SRP_bact
1192516	1192592	+	77	134093294	HEARtRNA12	-	^{03 Pro tRNA}
1193456	1193532	-	77	134093294	HEARtRNA41	-	^{11 Arg tRNA}
1295685	1295769	-	85	134093294	HEARtRNA40	-	^{15 Leu tRNA}
1309047	1309140	+	94	134093294	HEARtRNA13	-	^{08 Ser tRNA}
1758776	1758852	-	77	134093294	HEARtRNA39	-	^{06 Asp tRNA}
1758888	1758963	-	76	134093294	HEARtRNA38	-	^{13 Val tRNA}
1765723	1765809	-	87	134093294	HEARtRNA37	-	^{15 Leu tRNA}
1806755	1806831	-	77	134093294	HEARtRNA36	-	^{03 Pro tRNA}
1814879	1814955	-	77	134093294	HEARtRNA35	-	^{13 Val tRNA}
1840117	1840201	-	85	134093294	HEARtRNA34	-	^{15 Leu tRNA}
1880122	1880198	-	77	134093294	HEARtRNA33	-	^{11 Arg tRNA}
1977415	1977501	-	87	134093294	HEARtRNA32	-	^{15 Leu tRNA}
1977561	1977634	-	74	134093294	HEARtRNA31	-	^{19 Cys tRNA}
2066139	2066214	-	76	134093294	HEARtRNA30	-	^{01 Gly tRNA}
2097571	2097745	-	175	134093294	HEARmisc_RNA_4	-	RFN
2123464	2123553	-	90	134093294	HEARtRNA29	-	^{08 Ser tRNA}
2246882	2246957	+	76	134093294	HEARtRNA14	-	^{07 Asn tRNA}
2302582	2302656	-	75	134093294	HEARtRNA28	-	^{13 Val tRNA}
2385687	2385762	+	76	134093294	HEARtRNA15	-	^{10 Lys tRNA}
2413748	2413824	-	77	134093294	HEARtRNA27	-	^{16 Met tRNA}
2428705	2428779	+	75	134093294	HEARtRNA16	-	^{11 Arg tRNA}
2665524	2665597	+	74	134093294	HEARtRNA17	-	^{01 Gly tRNA}
2796781	2797042	-	262	134093294	HEARmisc_RNA_2	-	RNaseP_bact_a
2869002	2869078	+	77	134093294	HEARtRNA18	-	^{05 Gln tRNA}
3006051	3006126	-	76	134093294	HEARtRNA26	-	^{12 Thr tRNA}
3136635	3136710	-	76	134093294	HEARtRNA25	-	^{20 Trp tRNA}
3138084	3138158	-	75	134093294	HEARtRNA24	-	^{12 Thr tRNA}
3138205	3138278	-	74	134093294	HEARtRNA23	-	^{01 Gly tRNA}
3138324	3138409	-	86	134093294	HEARtRNA22	-	^{18 Tyr tRNA}
3311308	3311383	-	76	134093294	HEARtRNA21	-	^{11 Arg tRNA}
3320840	3320915	+	76	134093294	HEARtRNA19	-	^{13 Val tRNA}
3320955	3321031	+	77	134093294	HEARtRNA20	-	^{06 Asp tRNA}