Геном прокариот/Материалы:NC 009379

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009379            2159490 bp    DNA     circular BCT 21-JUN-2007
   DEFINITION  Polynucleobacter sp. QLW-P1DMWA-1, complete genome.
   ACCESSION   NC_009379
   VERSION     NC_009379.1  GI:145588189
   KEYWORDS    .
   SOURCE      Polynucleobacter sp. QLW-P1DMWA-1
     ORGANISM  Polynucleobacter sp. QLW-P1DMWA-1
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Polynucleobacter.
   REFERENCE   1  (bases 1 to 2159490)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Meincke,L., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Poeckl,M., Wu,Q.L., Hahn,M. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Polynucleobacter sp. QLW-P1DMWA-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2159490)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Meincke,L., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Poeckl,M., Wu,Q.L., Hahn,M. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (09-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   REFERENCE   3  (bases 1 to 2159490)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (01-AUG-2000) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000655.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001734
               Source DNA and bacteria available from Martin Hahn
               (martin.hahn@oeaw.ac.at)
               Contacts: Martin Hahn (martin.hahn@oeaw.ac.at)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
32310	32385	-	76	145588189	Pnuc_R0001	-	^{11 Arg tRNA}
36826	38361	+	1536	145588189	Pnuc_R0002	-	16S ribosomal RNA
38418	38494	+	77	145588189	Pnuc_R0003	-	^{14 Ile tRNA}
38525	38600	+	76	145588189	Pnuc_R0004	-	^{02 Ala tRNA}
38869	41743	+	2875	145588189	Pnuc_R0005	-	23S ribosomal RNA
41846	41963	+	118	145588189	Pnuc_R0006	-	5S ribosomal RNA
42067	42151	+	85	145588189	Pnuc_R0007	-	^{18 Tyr tRNA}
42157	42230	+	74	145588189	Pnuc_R0008	-	^{01 Gly tRNA}
42251	42325	+	75	145588189	Pnuc_R0009	-	^{12 Thr tRNA}
43590	43665	+	76	145588189	Pnuc_R0010	-	^{20 Trp tRNA}
123899	123974	+	76	145588189	Pnuc_R0011	-	^{12 Thr tRNA}
407922	407997	+	76	145588189	Pnuc_R0012	-	^{01 Gly tRNA}
408047	408120	+	74	145588189	Pnuc_R0013	-	^{19 Cys tRNA}
480244	480599	-	356	145588189	Pnuc_R0014	-	tmRNA
580448	580523	-	76	145588189	Pnuc_R0015	-	^{10 Lys tRNA}
607870	607954	+	85	145588189	Pnuc_R0016	-	^{15 Leu tRNA}
670849	670924	+	76	145588189	Pnuc_R0017	-	^{12 Thr tRNA}
693706	693795	+	90	145588189	Pnuc_R0018	-	^{08 Ser tRNA}
700011	700115	-	105	145588189	Pnuc_R0019	-	SRP RNA; RNA component of signal recognition particle
823230	823306	+	77	145588189	Pnuc_R0020	-	^{13 Val tRNA}
830898	830974	+	77	145588189	Pnuc_R0021	-	^{03 Pro tRNA}
857068	857162	+	95	145588189	Pnuc_R0022	-	^{08 Ser tRNA}
881871	881946	-	76	145588189	Pnuc_R0023	-	^{07 Asn tRNA}
890000	890074	-	75	145588189	Pnuc_R0024	-	^{11 Arg tRNA}
930035	930121	+	87	145588189	Pnuc_R0025	-	^{15 Leu tRNA}
936306	936381	+	76	145588189	Pnuc_R0026	-	^{13 Val tRNA}
954419	954494	+	76	145588189	Pnuc_R0027	-	^{02 Ala tRNA}
954529	954604	+	76	145588189	Pnuc_R0028	-	^{04 Glu tRNA}
954655	954731	+	77	145588189	Pnuc_R0029	-	^{06 Asp tRNA}
1005961	1006037	-	77	145588189	Pnuc_R0030	-	^{11 Arg tRNA}
1006074	1006150	-	77	145588189	Pnuc_R0031	-	^{03 Pro tRNA}
1055841	1055925	-	85	145588189	Pnuc_R0032	-	^{15 Leu tRNA}
1078788	1078864	-	77	145588189	Pnuc_R0033	-	^{11 Arg tRNA}
1096230	1096319	-	90	145588189	Pnuc_R0034	-	^{08 Ser tRNA}
1186934	1187024	-	91	145588189	Pnuc_R0035	-	^{08 Ser tRNA}
1204350	1204438	-	89	145588189	Pnuc_R0036	-	^{15 Leu tRNA}
1235221	1235296	-	76	145588189	Pnuc_R0037	-	^{09 His tRNA}
1342971	1343057	+	87	145588189	Pnuc_R0038	-	^{15 Leu tRNA}
1540411	1540487	+	77	145588189	Pnuc_R0039	-	^{16 Met tRNA}
1719678	1719752	+	75	145588189	Pnuc_R0040	-	^{19 Cys tRNA}
1923798	1923874	-	77	145588189	Pnuc_R0041	-	^{16 Met tRNA}
1962324	1962576	-	253	145588189	Pnuc_R0042	-	RNase P
1999091	1999167	+	77	145588189	Pnuc_R0043	-	^{05 Gln tRNA}
2139906	2139981	-	76	145588189	Pnuc_R0044	-	^{17 Phe tRNA}