Геном прокариот/Материалы:NC 009441

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009441            6096872 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Flavobacterium johnsoniae UW101, complete genome.
   ACCESSION   NC_009441
   VERSION     NC_009441.1  GI:146297766
   KEYWORDS    .
   SOURCE      Flavobacterium johnsoniae UW101
     ORGANISM  Flavobacterium johnsoniae UW101
               Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales;
               Flavobacteriaceae; Flavobacterium.
   REFERENCE   1  (bases 1 to 6096872)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
               Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Xie,G., McBride,M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Flavobacterium johnsoniae UW101
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 6096872)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (08-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 6096872)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
               Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Xie,G., McBride,M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (24-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000685.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000268
               Source DNA available from Mark McBride (mcbride@uwm.edu)
               Bacteria available from ATCC: ATCC 17061
               Contacts: Mark McBride (mcbride@uwm.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
24130	24249	-	120	146297766	Fjoh_R0001	-	5S ribosomal RNA
24406	27279	-	2874	146297766	Fjoh_R0002	-	23S ribosomal RNA
27468	27544	-	77	146297766	Fjoh_R0003	-	^{02 Ala tRNA}
27685	27758	-	74	146297766	Fjoh_R0004	-	^{14 Ile tRNA}
27883	29401	-	1519	146297766	Fjoh_R0005	-	16S ribosomal RNA
59185	59260	+	76	146297766	Fjoh_R0006	-	^{10 Lys tRNA}
59298	59373	+	76	146297766	Fjoh_R0007	-	^{10 Lys tRNA}
59415	59497	+	83	146297766	Fjoh_R0008	-	^{15 Leu tRNA}
60334	60409	+	76	146297766	Fjoh_R0009	-	^{10 Lys tRNA}
149554	149630	+	77	146297766	Fjoh_R0010	-	^{16 Met tRNA}
210753	210830	+	78	146297766	Fjoh_R0011	-	^{03 Pro tRNA}
285239	285315	-	77	146297766	Fjoh_R0012	-	^{12 Thr tRNA}
285421	285497	-	77	146297766	Fjoh_R0013	-	^{12 Thr tRNA}
479336	479413	+	78	146297766	Fjoh_R0014	-	^{13 Val tRNA}
500470	500589	-	120	146297766	Fjoh_R0015	-	5S ribosomal RNA
500746	503619	-	2874	146297766	Fjoh_R0016	-	23S ribosomal RNA
503808	503884	-	77	146297766	Fjoh_R0017	-	^{02 Ala tRNA}
504025	504098	-	74	146297766	Fjoh_R0018	-	^{14 Ile tRNA}
504223	505741	-	1519	146297766	Fjoh_R0019	-	16S ribosomal RNA
636553	636629	+	77	146297766	Fjoh_R0020	-	^{02 Ala tRNA}
717349	717422	-	74	146297766	Fjoh_R0021	-	^{16 Met tRNA}
1158187	1158260	+	74	146297766	Fjoh_R0022	-	Xaa tRNA
1273954	1274033	-	80	146297766	Fjoh_R0023	-	^{15 Leu tRNA}
1309065	1309138	-	74	146297766	Fjoh_R0024	-	^{07 Asn tRNA}
1309174	1309250	-	77	146297766	Fjoh_R0025	-	^{07 Asn tRNA}
1466584	1466673	+	90	146297766	Fjoh_R0026	-	^{08 Ser tRNA}
1544677	1544753	+	77	146297766	Fjoh_R0027	-	^{06 Asp tRNA}
1545349	1545425	+	77	146297766	Fjoh_R0028	-	^{06 Asp tRNA}
1555298	1555382	-	85	146297766	Fjoh_R0029	-	^{15 Leu tRNA}
1617260	1617335	-	76	146297766	Fjoh_R0030	-	^{17 Phe tRNA}
1877676	1877746	+	71	146297766	Fjoh_R0031	-	^{05 Gln tRNA}
1877856	1877926	+	71	146297766	Fjoh_R0032	-	^{05 Gln tRNA}
1997996	1998071	+	76	146297766	Fjoh_R0033	-	^{01 Gly tRNA}
1998083	1998171	+	89	146297766	Fjoh_R0034	-	^{15 Leu tRNA}
2049396	2049471	+	76	146297766	Fjoh_R0035	-	^{01 Gly tRNA}
2049565	2049637	+	73	146297766	Fjoh_R0036	-	^{01 Gly tRNA}
2099953	2100026	+	74	146297766	Fjoh_R0037	-	^{11 Arg tRNA}
2152539	2152614	-	76	146297766	Fjoh_R0038	-	^{16 Met tRNA}
2161302	2161376	-	75	146297766	Fjoh_R0039	-	^{04 Glu tRNA}
2163372	2163447	-	76	146297766	Fjoh_R0040	-	^{16 Met tRNA}
2238456	2238532	+	77	146297766	Fjoh_R0041	-	^{12 Thr tRNA}
2238589	2238672	+	84	146297766	Fjoh_R0042	-	^{18 Tyr tRNA}
2238761	2238835	+	75	146297766	Fjoh_R0043	-	^{12 Thr tRNA}
2240138	2240211	+	74	146297766	Fjoh_R0044	-	^{20 Trp tRNA}
2304220	2305738	+	1519	146297766	Fjoh_R0045	-	16S ribosomal RNA
2305862	2305935	+	74	146297766	Fjoh_R0046	-	^{14 Ile tRNA}
2306076	2306152	+	77	146297766	Fjoh_R0047	-	^{02 Ala tRNA}
2306342	2309215	+	2874	146297766	Fjoh_R0048	-	23S ribosomal RNA
2309372	2309491	+	120	146297766	Fjoh_R0049	-	5S ribosomal RNA
2543534	2543621	-	88	146297766	Fjoh_R0050	-	^{08 Ser tRNA}
2544889	2546407	+	1519	146297766	Fjoh_R0051	-	16S ribosomal RNA
2546531	2546604	+	74	146297766	Fjoh_R0052	-	^{14 Ile tRNA}
2546745	2546821	+	77	146297766	Fjoh_R0053	-	^{02 Ala tRNA}
2547011	2549884	+	2874	146297766	Fjoh_R0054	-	23S ribosomal RNA
2550041	2550160	+	120	146297766	Fjoh_R0055	-	5S ribosomal RNA
2551831	2551918	-	88	146297766	Fjoh_R0056	-	^{08 Ser tRNA}
3263822	3265340	+	1519	146297766	Fjoh_R0057	-	16S ribosomal RNA
3265464	3265537	+	74	146297766	Fjoh_R0058	-	^{14 Ile tRNA}
3265678	3265754	+	77	146297766	Fjoh_R0059	-	^{02 Ala tRNA}
3265944	3268817	+	2874	146297766	Fjoh_R0060	-	23S ribosomal RNA
3268974	3269093	+	120	146297766	Fjoh_R0061	-	5S ribosomal RNA
3269156	3269228	+	73	146297766	Fjoh_R0062	-	^{17 Phe tRNA}
3269235	3269323	+	89	146297766	Fjoh_R0063	-	^{15 Leu tRNA}
3353648	3353725	+	78	146297766	Fjoh_R0064	-	^{13 Val tRNA}
3354107	3354184	+	78	146297766	Fjoh_R0065	-	^{13 Val tRNA}
3525190	3525266	+	77	146297766	Fjoh_R0066	-	^{11 Arg tRNA}
5118548	5118667	-	120	146297766	Fjoh_R0067	-	5S ribosomal RNA
5118824	5121697	-	2874	146297766	Fjoh_R0068	-	23S ribosomal RNA
5121886	5121962	-	77	146297766	Fjoh_R0069	-	^{02 Ala tRNA}
5122103	5122176	-	74	146297766	Fjoh_R0070	-	^{14 Ile tRNA}
5122301	5123819	-	1519	146297766	Fjoh_R0071	-	16S ribosomal RNA
5248419	5248499	+	81	146297766	Fjoh_R0072	-	^{18 Tyr tRNA}
5465948	5466213	-	266	146297766	Fjoh_R0073	-	RNA component of RNase P
5525783	5525882	-	100	146297766	Fjoh_R0074	-	SRP RNA; RNA component of signal recognition particle
5575980	5576056	-	77	146297766	Fjoh_R0075	-	^{11 Arg tRNA}
5576071	5576145	-	75	146297766	Fjoh_R0076	-	^{03 Pro tRNA}
5576160	5576243	-	84	146297766	Fjoh_R0077	-	^{08 Ser tRNA}
5696434	5696509	-	76	146297766	Fjoh_R0078	-	^{09 His tRNA}
5739228	5739348	-	121	146297766	Fjoh_R0079	-	Xaa tRNA
5787394	5787790	+	397	146297766	Fjoh_R0080	-	tmRNA
5965190	5965261	-	72	146297766	Fjoh_R0081	-	^{04 Glu tRNA}
5965304	5965378	-	75	146297766	Fjoh_R0082	-	^{04 Glu tRNA}
6091459	6091532	-	74	146297766	Fjoh_R0083	-	^{20 Trp tRNA}