Геном прокариот/Материалы:NC 009445

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009445            7456587 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Bradyrhizobium sp. ORS278, complete genome.
   ACCESSION   NC_009445
   VERSION     NC_009445.1  GI:146337175
   KEYWORDS    complete genome; PRO.
   SOURCE      Bradyrhizobium sp. ORS278
     ORGANISM  Bradyrhizobium sp. ORS278
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Bradyrhizobium.
   REFERENCE   1  (bases 1 to 7456587)
     AUTHORS   Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytrin,E.,
               Avarre,J.C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G.,
               Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A.,
               Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C.,
               Franck,W.L., Chang,W.S., Saunders,E., Bruce,D., Richardson,P.,
               Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D.,
               Vermeglio,A., Medigue,C. and Sadowsky,M.
     TITLE     The Rhizobial Nod Factors are not Universally Required for Legume
               Nodulation
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 7456587)
     AUTHORS   Jaubert,M., Lavergne,J., Fardoux,J., Hannibal,L., Vuillet,L.,
               Adriano,J.M., Bouyer,P., Pignol,D., Giraud,E. and Vermeglio,A.
     TITLE     A singular bacteriophytochrome acquired by lateral gene transfer
     JOURNAL   Unpublished
   REFERENCE   3  (bases 1 to 7456587)
     AUTHORS   Genoscope.
     CONSRTM   1:Genoscope, UMR 8030, France 2:LSTM, France 3:Dep SWC ; and
               BioTechnology Institute, USA 4:CEA/Cadarache,DEVM,UMR 6191, France
               5:NCSB , USA 6:DOE , USA 7:DOE , USA 8:Universite Lyon1, France;
               UMR5557, France; IFR 41, France.
     TITLE     Direct Submission
     JOURNAL   Submitted (21-NOV-2006) Genoscope - Centre National de Sequencage :
               BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
               - Web : www.genoscope.cns.fr)
   REFERENCE   4  (bases 1 to 7456587)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-NOV-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CU234118.
               Annotation data relative to BLAST similarities, COG assignations,
               enzymatic function prediction (PRIAM software), TMHMM and SignalP
               predictions, and synteny results (Syntonizer software) are
               available in FrankiaScope database via the MaGe annotation system
               http://www.genoscope.cns.fr/agc/mage/frankia.
               Each annotation includes a confidence level as follow: 1 : Function
               experimentally demonstrated in the studied organism 2a : Function
               of homologous gene experimentally demonstrated in an other organism
               2b : Function of strongly homologous gene
               3 : Function proposed based on presence of conserved amino acid
               motif, structural feature or limited homology
               4 : Homologs of previously reported genes of unknown function 5 :
               No homology to any previously reported sequences 6 : Doubtful CDS
               7 : Gene remnant.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
116406	116481	+	76	146337175	BRADOtRNA1	-	^{02 Ala tRNA}
143183	143269	-	87	146337175	BRADOtRNA50	-	^{15 Leu tRNA}
292712	292787	+	76	146337175	BRADOtRNA2	-	^{02 Ala tRNA}
311530	311605	-	76	146337175	BRADOtRNA49	-	^{12 Thr tRNA}
332058	332132	+	75	146337175	BRADOtRNA3	-	^{01 Gly tRNA}
449051	449140	+	90	146337175	BRADOtRNA4	-	^{08 Ser tRNA}
495267	495343	-	77	146337175	BRADOtRNA48	-	^{11 Arg tRNA}
689746	689822	+	77	146337175	BRADOtRNA5	-	^{11 Arg tRNA}
808247	808344	+	98	146337175	BRADOmisc_RNA_1	-	SRP_bact
831114	831190	+	77	146337175	BRADOtRNA6	-	^{11 Arg tRNA}
898436	898509	+	74	146337175	BRADOmisc_RNA_7	-	Intron_gpII
1315633	1315709	+	77	146337175	BRADOtRNA7	-	^{09 His tRNA}
1418511	1418587	-	77	146337175	BRADOtRNA47	-	Xaa tRNA
1459003	1459077	+	75	146337175	BRADOtRNA8	-	^{04 Glu tRNA}
1575020	1575094	-	75	146337175	BRADOtRNA46	-	^{13 Val tRNA}
1991182	1991255	+	74	146337175	BRADOmisc_RNA_8	-	Intron_gpII
2193505	2193581	+	77	146337175	BRADOtRNA9	-	^{03 Pro tRNA}
2313556	2313630	+	75	146337175	BRADOtRNA10	-	^{05 Gln tRNA}
3139393	3139479	-	87	146337175	BRADOtRNA45	-	^{15 Leu tRNA}
3203705	3203779	-	75	146337175	BRADOtRNA44	-	^{12 Thr tRNA}
3206841	3206926	+	86	146337175	BRADOtRNA11	-	^{18 Tyr tRNA}
3211570	3211643	+	74	146337175	BRADOtRNA12	-	^{01 Gly tRNA}
3244585	3244660	+	76	146337175	BRADOtRNA13	-	^{20 Trp tRNA}
3421313	3421389	-	77	146337175	BRADOtRNA43	-	^{11 Arg tRNA}
3464225	3464309	+	85	146337175	BRADOtRNA14	-	^{15 Leu tRNA}
3789846	3789920	+	75	146337175	BRADOtRNA15	-	^{04 Glu tRNA}
3841026	3841102	+	77	146337175	BRADOtRNA16	-	^{03 Pro tRNA}
3878669	3878743	-	75	146337175	BRADOtRNA42	-	^{08 Ser tRNA}
3918329	3918404	-	76	146337175	BRADOtRNA41	-	^{10 Lys tRNA}
3989099	3989188	-	90	146337175	BRADOtRNA40	-	^{08 Ser tRNA}
4061385	4061459	+	75	146337175	BRADOtRNA17	-	^{07 Asn tRNA}
4072398	4072471	-	74	146337175	BRADOtRNA39	-	^{19 Cys tRNA}
4107680	4107756	+	77	146337175	BRADOtRNA18	-	^{11 Arg tRNA}
4388856	4388932	-	77	146337175	BRADOtRNA38	-	^{06 Asp tRNA}
4394377	4394453	-	77	146337175	BRADOtRNA37	-	^{13 Val tRNA}
4401555	4401639	-	85	146337175	BRADOtRNA36	-	^{15 Leu tRNA}
4618540	4618617	-	78	146337175	BRADOtRNA35	-	^{03 Pro tRNA}
4682839	4682932	-	94	146337175	BRADOtRNA34	-	^{08 Ser tRNA}
4849563	4849636	+	74	146337175	BRADOtRNA19	-	^{05 Gln tRNA}
5049703	5049825	-	123	146337175	BRADO_5S_2	-	ribosomal RNA 5S
5049923	5052563	-	2641	146337175	BRADO_23S_2	-	ribosomal RNA 23S
5053288	5053363	-	76	146337175	BRADOtRNA33	-	^{02 Ala tRNA}
5053511	5053587	-	77	146337175	BRADOtRNA32	-	^{14 Ile tRNA}
5053832	5055324	-	1493	146337175	BRADO_16S_2	-	ribosomal RNA 16S
5111599	5111792	-	194	146337175	BRADOmisc_RNA_2	-	Cobalamin
5178592	5178698	+	107	146337175	BRADOmisc_RNA_3	-	gcvT
5178702	5178792	+	91	146337175	BRADOmisc_RNA_4	-	gcvT
5708280	5708355	-	76	146337175	BRADOtRNA31	-	^{10 Lys tRNA}
5866943	5867305	+	363	146337175	BRADOmisc_RNA_6	-	RNaseP_bact_a
5912070	5912166	+	97	146337175	BRADOmisc_RNA_10	-	THI
6059839	6059914	+	76	146337175	BRADOtRNA20	-	^{16 Met tRNA}
6111805	6111881	-	77	146337175	BRADOtRNA30	-	^{16 Met tRNA}
6258242	6258436	-	195	146337175	BRADOmisc_RNA_9	-	RFN
6448675	6448749	-	75	146337175	BRADOtRNA29	-	^{13 Val tRNA}
6671825	6671901	-	77	146337175	BRADOtRNA28	-	^{16 Met tRNA}
6690866	6690988	-	123	146337175	BRADO_5S_1	-	ribosomal RNA 5S
6691081	6693721	-	2641	146337175	BRADO_23S_1	-	ribosomal RNA 23S
6694446	6694521	-	76	146337175	BRADOtRNA27	-	^{02 Ala tRNA}
6694669	6694745	-	77	146337175	BRADOtRNA26	-	^{14 Ile tRNA}
6694990	6696482	-	1493	146337175	BRADO_16S_1	-	ribosomal RNA 16S
6797711	6797795	+	85	146337175	BRADOtRNA21	-	^{15 Leu tRNA}
6887044	6887119	-	76	146337175	BRADOtRNA25	-	^{17 Phe tRNA}
6894920	6894994	+	75	146337175	BRADOtRNA22	-	^{12 Thr tRNA}
7022035	7022108	-	74	146337175	BRADOtRNA24	-	^{01 Gly tRNA}
7058665	7058767	-	103	146337175	BRADOmisc_RNA_5	-	ykkC-yxkD
7235113	7235202	-	90	146337175	BRADOtRNA23	-	^{08 Ser tRNA}