Геном прокариот/Материалы:NC 009455

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   LOCUS       NC_009455            1341892 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Dehalococcoides sp. BAV1, complete genome.
   ACCESSION   NC_009455
   VERSION     NC_009455.1  GI:147668652
   KEYWORDS    .
   SOURCE      Dehalococcoides sp. BAV1
     ORGANISM  Dehalococcoides sp. BAV1
               Bacteria; Chloroflexi; Dehalococcoidetes; Dehalococcoides.
   REFERENCE   1  (bases 1 to 1341892)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Lowry,S., Clum,A.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Ritalahti,K.M., Loeffler,F. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Dehalococcoides sp. BAV1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1341892)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Lowry,S., Clum,A.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Ritalahti,K.M., Loeffler,F. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (03-MAY-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   REFERENCE   3  (bases 1 to 1341892)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (01-NOV-2002) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000688.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000264
               Source DNA and bacteria available from Frank Loeffler
               (frank.loeffler@ce.gatech.edu)
               Contacts: Frank Loeffler (frank.loeffler@ce.gatech.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК править

Начало Конец Направление Длина PID Ген COG Комментарий
47151 50104 + 2954 147668652 DehaBAV1_R0001 - 23S ribosomal RNA
50199 50321 + 123 147668652 DehaBAV1_R0002 - 5S ribosomal RNA
57444 57519 + 76 147668652 DehaBAV1_R0003 - 02 Ala tRNA
223784 223859 - 76 147668652 DehaBAV1_R0004 - 13 Val tRNA
312176 312251 - 76 147668652 DehaBAV1_R0005 - 02 Ala tRNA
350362 350665 + 304 147668652 DehaBAV1_R0006 - RNAse P
372125 372199 + 75 147668652 DehaBAV1_R0007 - 12 Thr tRNA
403848 403922 - 75 147668652 DehaBAV1_R0008 - 16 Met tRNA
535171 535260 - 90 147668652 DehaBAV1_R0009 - 08 Ser tRNA
644324 644413 - 90 147668652 DehaBAV1_R0010 - 08 Ser tRNA
644450 644539 - 90 147668652 DehaBAV1_R0011 - 08 Ser tRNA
646274 646345 + 72 147668652 DehaBAV1_R0012 - 11 Arg tRNA
652466 652543 + 78 147668652 DehaBAV1_R0013 - 03 Pro tRNA
654991 655065 - 75 147668652 DehaBAV1_R0014 - 01 Gly tRNA
655617 655691 + 75 147668652 DehaBAV1_R0015 - 16 Met tRNA
667738 667814 + 77 147668652 DehaBAV1_R0016 - 11 Arg tRNA
677376 677460 - 85 147668652 DehaBAV1_R0017 - 15 Leu tRNA
679908 679984 + 77 147668652 DehaBAV1_R0018 - 03 Pro tRNA
719505 719580 + 76 147668652 DehaBAV1_R0019 - 17 Phe tRNA
719655 719741 + 87 147668652 DehaBAV1_R0020 - 15 Leu tRNA
719772 719845 + 74 147668652 DehaBAV1_R0021 - 05 Gln tRNA
719856 719930 + 75 147668652 DehaBAV1_R0022 - 07 Asn tRNA
726826 726898 - 73 147668652 DehaBAV1_R0023 - 10 Lys tRNA
760830 760904 + 75 147668652 DehaBAV1_R0024 - 01 Gly tRNA
782120 782195 - 76 147668652 DehaBAV1_R0025 - 10 Lys tRNA
839073 839148 - 76 147668652 DehaBAV1_R0026 - 11 Arg tRNA
839164 839239 - 76 147668652 DehaBAV1_R0027 - 09 His tRNA
874886 874961 - 76 147668652 DehaBAV1_R0028 - 12 Thr tRNA
875024 875107 - 84 147668652 DehaBAV1_R0029 - 18 Tyr tRNA
875147 875219 - 73 147668652 DehaBAV1_R0030 - 12 Thr tRNA
891868 891944 - 77 147668652 DehaBAV1_R0031 - 14 Ile tRNA
892247 893755 - 1509 147668652 DehaBAV1_R0032 - 16S ribosomal RNA
895133 895209 - 77 147668652 DehaBAV1_R0033 - 04 Glu tRNA
895222 895295 - 74 147668652 DehaBAV1_R0034 - 05 Gln tRNA
914980 915056 + 77 147668652 DehaBAV1_R0035 - 06 Asp tRNA
985134 985210 - 77 147668652 DehaBAV1_R0036 - 13 Val tRNA
1112963 1113037 + 75 147668652 DehaBAV1_R0037 - 16 Met tRNA
1171930 1172021 - 92 147668652 DehaBAV1_R0038 - 08 Ser tRNA
1226125 1226201 + 77 147668652 DehaBAV1_R0039 - 20 Trp tRNA
1226207 1226293 + 87 147668652 DehaBAV1_R0040 - 15 Leu tRNA
1226307 1226381 + 75 147668652 DehaBAV1_R0041 - 01 Gly tRNA
1226419 1226493 + 75 147668652 DehaBAV1_R0042 - 19 Cys tRNA
1227433 1227517 + 85 147668652 DehaBAV1_R0043 - 15 Leu tRNA
1243299 1243385 + 87 147668652 DehaBAV1_R0044 - 15 Leu tRNA
1243391 1243468 + 78 147668652 DehaBAV1_R0045 - 11 Arg tRNA
1243479 1243555 + 77 147668652 DehaBAV1_R0046 - 13 Val tRNA
1266790 1267140 + 351 147668652 DehaBAV1_R0047 - tmRNA
1276021 1276093 + 73 147668652 DehaBAV1_R0048 - 02 Ala tRNA
1295758 1295834 + 77 147668652 DehaBAV1_R0049 - 11 Arg tRNA
1325135 1325210 - 76 147668652 DehaBAV1_R0050 - 04 Glu tRNA
1337474 1337551 + 78 147668652 DehaBAV1_R0051 - 03 Pro tRNA