Геном прокариот/Материалы:NC 009487

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009487            2906700 bp    DNA     circular BCT 08-AUG-2007
   DEFINITION  Staphylococcus aureus subsp. aureus JH9, complete genome.
   ACCESSION   NC_009487
   VERSION     NC_009487.1  GI:148266447
   KEYWORDS    .
   SOURCE      Staphylococcus aureus subsp. aureus JH9
     ORGANISM  Staphylococcus aureus subsp. aureus JH9
               Bacteria; Firmicutes; Bacillales; Staphylococcus.
   REFERENCE   1  (bases 1 to 2906700)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., Tomasz,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Staphylococcus aureus subsp.
               aureus JH9
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2906700)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2906700)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., Tomasz,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (14-MAY-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000703.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001073
               Source DNA and bacteria available from Alexander Tomasz
               (tomasz@rockefeller.edu)
               Contacts: Alexander Tomasz (tomasz@rockefeller.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
24215	24289	+	75	148266447	SaurJH9_R0001	-	^{04 Glu tRNA}
24297	24369	+	73	148266447	SaurJH9_R0002	-	^{06 Asp tRNA}
532173	532265	+	93	148266447	SaurJH9_R0003	-	^{08 Ser tRNA}
536798	536898	+	101	148266447	SaurJH9_R0004	-	SRP RNA; RNA component of signal recognitionparticle
541421	542975	+	1555	148266447	SaurJH9_R0005	-	16S ribosomal RNA
543340	546262	+	2923	148266447	SaurJH9_R0006	-	23S ribosomal RNA
546334	546452	+	119	148266447	SaurJH9_R0007	-	5S ribosomal RNA
584769	584884	+	116	148266447	SaurJH9_R0008	-	5S ribosomal RNA
584894	584969	+	76	148266447	SaurJH9_R0009	-	^{13 Val tRNA}
584986	585061	+	76	148266447	SaurJH9_R0010	-	^{12 Thr tRNA}
585068	585140	+	73	148266447	SaurJH9_R0011	-	^{10 Lys tRNA}
585174	585248	+	75	148266447	SaurJH9_R0012	-	^{01 Gly tRNA}
585256	585344	+	89	148266447	SaurJH9_R0013	-	^{15 Leu tRNA}
585350	585426	+	77	148266447	SaurJH9_R0014	-	^{11 Arg tRNA}
585447	585520	+	74	148266447	SaurJH9_R0015	-	^{03 Pro tRNA}
585544	585619	+	76	148266447	SaurJH9_R0016	-	^{02 Ala tRNA}
585740	587294	+	1555	148266447	SaurJH9_R0017	-	16S ribosomal RNA
587764	590686	+	2923	148266447	SaurJH9_R0018	-	23S ribosomal RNA
590758	590876	+	119	148266447	SaurJH9_R0019	-	5S ribosomal RNA
591085	592639	+	1555	148266447	SaurJH9_R0020	-	16S ribosomal RNA
593004	595926	+	2923	148266447	SaurJH9_R0021	-	23S ribosomal RNA
596001	596114	+	114	148266447	SaurJH9_R0022	-	5S ribosomal RNA
869364	869435	-	72	148266447	SaurJH9_R0023	-	^{11 Arg tRNA}
885621	885979	+	359	148266447	SaurJH9_R0024	-	tmRNA
1127273	1127361	-	89	148266447	SaurJH9_R0025	-	^{08 Ser tRNA}
1127364	1127438	-	75	148266447	SaurJH9_R0026	-	^{07 Asn tRNA}
1276772	1276845	-	74	148266447	SaurJH9_R0027	-	^{11 Arg tRNA}
1608572	1608919	+	348	148266447	SaurJH9_R0028	-	RNAseP RNA
2004094	2004182	-	89	148266447	SaurJH9_R0029	-	^{08 Ser tRNA}
2004237	2004308	-	72	148266447	SaurJH9_R0030	-	^{04 Glu tRNA}
2004310	2004384	-	75	148266447	SaurJH9_R0031	-	^{07 Asn tRNA}
2004402	2004475	-	74	148266447	SaurJH9_R0032	-	^{01 Gly tRNA}
2004491	2004566	-	76	148266447	SaurJH9_R0033	-	^{09 His tRNA}
2004580	2004652	-	73	148266447	SaurJH9_R0034	-	^{17 Phe tRNA}
2004669	2004744	-	76	148266447	SaurJH9_R0035	-	^{06 Asp tRNA}
2004766	2004839	-	74	148266447	SaurJH9_R0036	-	^{16 Met tRNA}
2039984	2040067	-	84	148266447	SaurJH9_R0037	-	^{15 Leu tRNA}
2040106	2040180	-	75	148266447	SaurJH9_R0038	-	Xaa tRNA
2040284	2040358	-	75	148266447	SaurJH9_R0039	-	^{01 Gly tRNA}
2040366	2040439	-	74	148266447	SaurJH9_R0040	-	^{19 Cys tRNA}
2040445	2040516	-	72	148266447	SaurJH9_R0041	-	^{05 Gln tRNA}
2040528	2040600	-	73	148266447	SaurJH9_R0042	-	^{09 His tRNA}
2040603	2040676	-	74	148266447	SaurJH9_R0043	-	^{20 Trp tRNA}
2040692	2040773	-	82	148266447	SaurJH9_R0044	-	^{18 Tyr tRNA}
2040779	2040854	-	76	148266447	SaurJH9_R0045	-	^{12 Thr tRNA}
2040862	2040934	-	73	148266447	SaurJH9_R0046	-	^{17 Phe tRNA}
2040953	2041028	-	76	148266447	SaurJH9_R0047	-	^{06 Asp tRNA}
2041050	2041123	-	74	148266447	SaurJH9_R0048	-	^{16 Met tRNA}
2041138	2041230	-	93	148266447	SaurJH9_R0049	-	^{08 Ser tRNA}
2041269	2041344	-	76	148266447	SaurJH9_R0050	-	^{06 Asp tRNA}
2041355	2041444	-	90	148266447	SaurJH9_R0051	-	^{08 Ser tRNA}
2041454	2041527	-	74	148266447	SaurJH9_R0052	-	^{16 Met tRNA}
2041553	2041629	-	77	148266447	SaurJH9_R0053	-	^{16 Met tRNA}
2041651	2041726	-	76	148266447	SaurJH9_R0054	-	^{02 Ala tRNA}
2041744	2041817	-	74	148266447	SaurJH9_R0055	-	^{03 Pro tRNA}
2041827	2041900	-	74	148266447	SaurJH9_R0056	-	^{11 Arg tRNA}
2041919	2042007	-	89	148266447	SaurJH9_R0057	-	^{15 Leu tRNA}
2042018	2042092	-	75	148266447	SaurJH9_R0058	-	^{01 Gly tRNA}
2042096	2042177	-	82	148266447	SaurJH9_R0059	-	^{15 Leu tRNA}
2042181	2042256	-	76	148266447	SaurJH9_R0060	-	^{10 Lys tRNA}
2042262	2042337	-	76	148266447	SaurJH9_R0061	-	^{12 Thr tRNA}
2042354	2042429	-	76	148266447	SaurJH9_R0062	-	^{13 Val tRNA}
2042440	2042553	-	114	148266447	SaurJH9_R0063	-	5S ribosomal RNA
2042628	2045550	-	2923	148266447	SaurJH9_R0064	-	23S ribosomal RNA
2045764	2045839	-	76	148266447	SaurJH9_R0065	-	^{02 Ala tRNA}
2045858	2045934	-	77	148266447	SaurJH9_R0066	-	^{14 Ile tRNA}
2046017	2047578	-	1562	148266447	SaurJH9_R0067	-	16S ribosomal RNA
2215389	2215502	-	114	148266447	SaurJH9_R0068	-	5S ribosomal RNA
2215577	2218499	-	2923	148266447	SaurJH9_R0069	-	23S ribosomal RNA
2218962	2220523	-	1562	148266447	SaurJH9_R0070	-	16S ribosomal RNA
2220641	2220714	-	74	148266447	SaurJH9_R0071	-	^{01 Gly tRNA}
2220733	2220818	-	86	148266447	SaurJH9_R0072	-	^{15 Leu tRNA}
2329960	2330035	-	76	148266447	SaurJH9_R0073	-	^{10 Lys tRNA}
2330039	2330113	-	75	148266447	SaurJH9_R0074	-	^{05 Gln tRNA}
2330123	2330206	-	84	148266447	SaurJH9_R0075	-	^{18 Tyr tRNA}
2330236	2330311	-	76	148266447	SaurJH9_R0076	-	^{13 Val tRNA}
2330319	2330390	-	72	148266447	SaurJH9_R0077	-	^{04 Glu tRNA}
2330392	2330466	-	75	148266447	SaurJH9_R0078	-	^{07 Asn tRNA}
2330475	2330593	-	119	148266447	SaurJH9_R0079	-	5S ribosomal RNA
2330664	2333586	-	2923	148266447	SaurJH9_R0080	-	23S ribosomal RNA
2334049	2335610	-	1562	148266447	SaurJH9_R0081	-	16S ribosomal RNA