Геном прокариот/Материалы:NC 009524

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009524            2978976 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Psychrobacter sp. PRwf-1, complete genome.
   ACCESSION   NC_009524
   VERSION     NC_009524.1  GI:148651817
   KEYWORDS    .
   SOURCE      Psychrobacter sp. PRwf-1
     ORGANISM  Psychrobacter sp. PRwf-1
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Moraxellaceae; Psychrobacter.
   REFERENCE   1  (bases 1 to 2978976)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Tiedje,J. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Psychrobacter sp. PEwf-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2978976)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Tiedjej,J. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (24-MAY-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   REFERENCE   3  (bases 1 to 2978976)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-DEC-2003) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000713.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001101
               Source DNA and bacteria available from James Tiedje
               (tiedjej@pilot.msu.edu)
               Contacts: James Tiedje (tiedjej@pilot.msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
72770	72845	-	76	148651817	PsycPRwf_R0001	-	^{17 Phe tRNA}
154137	154212	-	76	148651817	PsycPRwf_R0002	-	^{04 Glu tRNA}
154345	154420	-	76	148651817	PsycPRwf_R0003	-	^{02 Ala tRNA}
183117	183201	+	85	148651817	PsycPRwf_R0004	-	^{15 Leu tRNA}
183580	183656	+	77	148651817	PsycPRwf_R0005	-	^{16 Met tRNA}
250123	250198	+	76	148651817	PsycPRwf_R0006	-	^{01 Gly tRNA}
250335	250410	+	76	148651817	PsycPRwf_R0007	-	^{01 Gly tRNA}
409432	409521	+	90	148651817	PsycPRwf_R0008	-	^{08 Ser tRNA}
409661	409737	+	77	148651817	PsycPRwf_R0009	-	^{11 Arg tRNA}
444879	445195	+	317	148651817	PsycPRwf_R0010	-	RNA component of RNaseP
445350	445426	+	77	148651817	PsycPRwf_R0011	-	^{16 Met tRNA}
512302	512378	-	77	148651817	PsycPRwf_R0012	-	^{03 Pro tRNA}
727348	727424	-	77	148651817	PsycPRwf_R0013	-	^{11 Arg tRNA}
776635	778181	+	1547	148651817	PsycPRwf_R0014	-	16S ribosomal RNA
778231	778307	+	77	148651817	PsycPRwf_R0015	-	^{14 Ile tRNA}
778318	778393	+	76	148651817	PsycPRwf_R0016	-	^{02 Ala tRNA}
778714	781576	+	2863	148651817	PsycPRwf_R0017	-	23S ribosomal RNA
781742	781859	+	118	148651817	PsycPRwf_R0018	-	5S ribosomal RNA
828410	828486	+	77	148651817	PsycPRwf_R0019	-	^{13 Val tRNA}
910864	910939	+	76	148651817	PsycPRwf_R0020	-	^{13 Val tRNA}
910978	911054	+	77	148651817	PsycPRwf_R0021	-	^{06 Asp tRNA}
1190821	1190897	-	77	148651817	PsycPRwf_R0022	-	^{06 Asp tRNA}
1190938	1191013	-	76	148651817	PsycPRwf_R0023	-	^{13 Val tRNA}
1494916	1494991	+	76	148651817	PsycPRwf_R0024	-	^{11 Arg tRNA}
1566834	1566910	+	77	148651817	PsycPRwf_R0025	-	^{16 Met tRNA}
1796175	1796250	+	76	148651817	PsycPRwf_R0026	-	^{13 Val tRNA}
1796289	1796365	+	77	148651817	PsycPRwf_R0027	-	^{06 Asp tRNA}
1821365	1821440	+	76	148651817	PsycPRwf_R0028	-	^{13 Val tRNA}
1821497	1821573	+	77	148651817	PsycPRwf_R0029	-	^{06 Asp tRNA}
1910150	1910225	+	76	148651817	PsycPRwf_R0030	-	^{07 Asn tRNA}
1910585	1910660	+	76	148651817	PsycPRwf_R0031	-	^{07 Asn tRNA}
1911466	1911556	+	91	148651817	PsycPRwf_R0032	-	^{08 Ser tRNA}
1911745	1911835	+	91	148651817	PsycPRwf_R0033	-	^{08 Ser tRNA}
2029442	2029796	+	355	148651817	PsycPRwf_R0034	-	tmRNA
2031814	2031927	-	114	148651817	PsycPRwf_R0035	-	SRP RNA; RNA component of signal recognition particle
2055921	2055996	+	76	148651817	PsycPRwf_R0036	-	^{04 Glu tRNA}
2056241	2056316	+	76	148651817	PsycPRwf_R0037	-	^{04 Glu tRNA}
2241199	2241283	+	85	148651817	PsycPRwf_R0038	-	^{15 Leu tRNA}
2241558	2241642	+	85	148651817	PsycPRwf_R0039	-	^{15 Leu tRNA}
2253108	2253181	+	74	148651817	PsycPRwf_R0040	-	^{19 Cys tRNA}
2253300	2253386	+	87	148651817	PsycPRwf_R0041	-	^{15 Leu tRNA}
2280867	2280942	+	76	148651817	PsycPRwf_R0042	-	^{10 Lys tRNA}
2281196	2281271	+	76	148651817	PsycPRwf_R0043	-	^{10 Lys tRNA}
2380096	2380182	+	87	148651817	PsycPRwf_R0044	-	^{15 Leu tRNA}
2526720	2526795	-	76	148651817	PsycPRwf_R0045	-	^{09 His tRNA}
2526852	2526928	-	77	148651817	PsycPRwf_R0046	-	^{11 Arg tRNA}
2527007	2527083	-	77	148651817	PsycPRwf_R0047	-	^{03 Pro tRNA}
2546100	2546175	-	76	148651817	PsycPRwf_R0048	-	^{20 Trp tRNA}
2548007	2548081	-	75	148651817	PsycPRwf_R0049	-	^{12 Thr tRNA}
2548107	2548180	-	74	148651817	PsycPRwf_R0050	-	^{01 Gly tRNA}
2548282	2548365	-	84	148651817	PsycPRwf_R0051	-	^{18 Tyr tRNA}
2548435	2548510	-	76	148651817	PsycPRwf_R0052	-	^{12 Thr tRNA}
2627330	2627405	+	76	148651817	PsycPRwf_R0053	-	^{05 Gln tRNA}
2627627	2627702	+	76	148651817	PsycPRwf_R0054	-	^{05 Gln tRNA}
2660779	2660896	-	118	148651817	PsycPRwf_R0055	-	5S ribosomal RNA
2661047	2663909	-	2863	148651817	PsycPRwf_R0056	-	23S ribosomal RNA
2664229	2664304	-	76	148651817	PsycPRwf_R0057	-	^{02 Ala tRNA}
2664315	2664391	-	77	148651817	PsycPRwf_R0058	-	^{14 Ile tRNA}
2664442	2665988	-	1547	148651817	PsycPRwf_R0059	-	16S ribosomal RNA
2803620	2803737	-	118	148651817	PsycPRwf_R0060	-	5S ribosomal RNA
2803889	2806751	-	2863	148651817	PsycPRwf_R0061	-	23S ribosomal RNA
2807071	2807146	-	76	148651817	PsycPRwf_R0062	-	^{02 Ala tRNA}
2807157	2807233	-	77	148651817	PsycPRwf_R0063	-	^{14 Ile tRNA}
2807284	2808830	-	1547	148651817	PsycPRwf_R0064	-	16S ribosomal RNA
2809513	2809630	-	118	148651817	PsycPRwf_R0065	-	5S ribosomal RNA
2809782	2812644	-	2863	148651817	PsycPRwf_R0066	-	23S ribosomal RNA
2812964	2813039	-	76	148651817	PsycPRwf_R0067	-	^{02 Ala tRNA}
2813050	2813126	-	77	148651817	PsycPRwf_R0068	-	^{14 Ile tRNA}
2813177	2814723	-	1547	148651817	PsycPRwf_R0069	-	16S ribosomal RNA
2815438	2815555	-	118	148651817	PsycPRwf_R0070	-	5S ribosomal RNA
2815707	2818569	-	2863	148651817	PsycPRwf_R0071	-	23S ribosomal RNA
2818889	2818964	-	76	148651817	PsycPRwf_R0072	-	^{02 Ala tRNA}
2818975	2819051	-	77	148651817	PsycPRwf_R0073	-	^{14 Ile tRNA}
2819102	2820648	-	1547	148651817	PsycPRwf_R0074	-	16S ribosomal RNA
2863153	2863243	+	91	148651817	PsycPRwf_R0075	-	^{08 Ser tRNA}