Геном прокариот/Материалы:NC 009566

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009566            1813033 bp    DNA     circular BCT 05-SEP-2007
   DEFINITION  Haemophilus influenzae PittEE, complete genome.
   ACCESSION   NC_009566
   VERSION     NC_009566.1  GI:148825133
   KEYWORDS    .
   SOURCE      Haemophilus influenzae PittEE
     ORGANISM  Haemophilus influenzae PittEE
               Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
               Pasteurellaceae; Haemophilus.
   REFERENCE   1  (bases 1 to 1813033)
     AUTHORS   Hogg,J.S., Hu,F.Z., Janto,B., Boissy,R., Hayes,J., Keefe,R.,
               Post,J.C. and Ehrlich,G.D.
     TITLE     Characterization and modeling of the Haemophilus influenzae core
               and supragenomes based on the complete genomic sequences of Rd and
               12 clinical nontypeable strains
     JOURNAL   (er) Genome Biol. 8 (6), R103 (2007) In press
      PUBMED   17550610
   REFERENCE   2  (bases 1 to 1813033)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (05-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1813033)
     AUTHORS   Ehrlich,G.D.
     TITLE     Direct Submission
     JOURNAL   Submitted (10-APR-2007) Center for Genomic Sciences,
               Allegheny-Singer Research Institute, 320 E. North Ave. 11th Floor,
               Pittsburgh, PA 15212-4772, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000671.
               Annotation was added by the NCBI Prokaryotic Genomes Automatic
               Annotation Pipeline Group.  Information about the Pipeline can be
               found here:
               http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
               aware that the annotation is done automatically with little or no
               manual curation.
               Annotation updated by the NCBI Prokaryotic Genomes Automatic
               Annotation Pipeline Group on September 9, 2007.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
146573	146658	-	86	148825133	CGSHiEE_t09342	-	^{15 Leu tRNA}
211332	211407	+	76	148825133	CGSHiEE_t09344	-	^{10 Lys tRNA}
211431	211506	+	76	148825133	CGSHiEE_t09346	-	^{10 Lys tRNA}
263735	263824	+	90	148825133	CGSHiEE_t09348	-	^{08 Ser tRNA}
314773	314848	-	76	148825133	CGSHiEE_t09350	-	^{13 Val tRNA}
314901	314976	-	76	148825133	CGSHiEE_t09352	-	^{13 Val tRNA}
315035	315110	-	76	148825133	CGSHiEE_t09354	-	^{13 Val tRNA}
315154	315229	-	76	148825133	CGSHiEE_t09356	-	^{13 Val tRNA}
316923	316998	+	76	148825133	CGSHiEE_t09358	-	^{02 Ala tRNA}
336292	336381	+	90	148825133	CGSHiEE_t09360	-	^{08 Ser tRNA}
376402	377942	+	1541	148825133	CGSHiEE_r09322	-	16S ribosomal RNA
378074	378149	+	76	148825133	CGSHiEE_t09362	-	^{04 Glu tRNA}
378420	378961	+	542	148825133	CGSHiEE_r09334	-	23S ribosomal RNA
378962	379073	+	112	148825133	CGSHiEE_r09334	-	intervening sequence
379074	381420	+	2347	148825133	CGSHiEE_r09334	-	23S ribosomal RNA
381644	381763	+	120	148825133	CGSHiEE_r09310	-	5S ribosomal RNA
381938	382014	+	77	148825133	CGSHiEE_t09364	-	^{06 Asp tRNA}
382043	382118	+	76	148825133	CGSHiEE_t09366	-	^{20 Trp tRNA}
393538	393614	+	77	148825133	CGSHiEE_t09368	-	^{03 Pro tRNA}
393662	393738	+	77	148825133	CGSHiEE_t09370	-	^{11 Arg tRNA}
409546	411086	+	1541	148825133	CGSHiEE_r09324	-	16S ribosomal RNA
411218	411293	+	76	148825133	CGSHiEE_t09372	-	^{04 Glu tRNA}
411564	412105	+	542	148825133	CGSHiEE_r09336	-	23S ribosomal RNA
412106	412217	+	112	148825133	CGSHiEE_r09336	-	intervening sequence
412218	414564	+	2347	148825133	CGSHiEE_r09336	-	23S ribosomal RNA
414756	414875	+	120	148825133	CGSHiEE_r09312	-	5S ribosomal RNA
513185	513261	+	77	148825133	CGSHiEE_t09374	-	^{06 Asp tRNA}
513285	513361	+	77	148825133	CGSHiEE_t09376	-	^{06 Asp tRNA}
521398	521473	-	76	148825133	CGSHiEE_t09378	-	^{10 Lys tRNA}
521524	521610	-	87	148825133	CGSHiEE_t09380	-	^{15 Leu tRNA}
521615	521690	-	76	148825133	CGSHiEE_t09382	-	^{01 Gly tRNA}
529620	529696	+	77	148825133	CGSHiEE_t09384	-	^{16 Met tRNA}
532111	532187	+	77	148825133	CGSHiEE_t09386	-	^{11 Arg tRNA}
532214	532289	+	76	148825133	CGSHiEE_t09388	-	^{09 His tRNA}
532311	532387	+	77	148825133	CGSHiEE_t09390	-	^{03 Pro tRNA}
532564	534103	+	1540	148825133	CGSHiEE_r09326	-	16S ribosomal RNA
534183	534259	+	77	148825133	CGSHiEE_t09392	-	^{14 Ile tRNA}
534345	534420	+	76	148825133	CGSHiEE_t09394	-	^{02 Ala tRNA}
534826	535367	+	542	148825133	CGSHiEE_r09338	-	23S ribosomal RNA
535368	535479	+	112	148825133	CGSHiEE_r09338	-	intervening sequence
535480	536096	+	617	148825133	CGSHiEE_r09338	-	23S ribosomal RNA
536097	536217	+	121	148825133	CGSHiEE_r09338	-	intervening sequence
536218	537939	+	1722	148825133	CGSHiEE_r09338	-	23S ribosomal RNA
538131	538250	+	120	148825133	CGSHiEE_r09314	-	5S ribosomal RNA
575938	576013	-	76	148825133	CGSHiEE_t09396	-	^{10 Lys tRNA}
576064	576150	-	87	148825133	CGSHiEE_t09398	-	^{15 Leu tRNA}
576178	576251	-	74	148825133	CGSHiEE_t09400	-	^{19 Cys tRNA}
576258	576333	-	76	148825133	CGSHiEE_t09402	-	^{01 Gly tRNA}
620061	620150	-	90	148825133	CGSHiEE_t09404	-	^{08 Ser tRNA}
675304	676843	+	1540	148825133	CGSHiEE_r09328	-	16S ribosomal RNA
676923	676999	+	77	148825133	CGSHiEE_t09406	-	^{14 Ile tRNA}
677085	677160	+	76	148825133	CGSHiEE_t09408	-	^{02 Ala tRNA}
677566	678107	+	542	148825133	CGSHiEE_r09340	-	23S ribosomal RNA
678108	678219	+	112	148825133	CGSHiEE_r09340	-	intervening sequence
678220	678836	+	617	148825133	CGSHiEE_r09340	-	23S ribosomal RNA
678837	678957	+	121	148825133	CGSHiEE_r09340	-	intervening sequence
678958	680679	+	1722	148825133	CGSHiEE_r09340	-	23S ribosomal RNA
680920	681038	+	119	148825133	CGSHiEE_r09316	-	5S ribosomal RNA
702662	702737	-	76	148825133	CGSHiEE_t09410	-	^{01 Gly tRNA}
702762	702837	-	76	148825133	CGSHiEE_t09412	-	^{01 Gly tRNA}
823150	823225	+	76	148825133	CGSHiEE_t09414	-	^{07 Asn tRNA}
855427	855503	+	77	148825133	CGSHiEE_t09416	-	^{16 Met tRNA}
967932	968017	-	86	148825133	CGSHiEE_t09418	-	^{15 Leu tRNA}
1089273	1089349	-	77	148825133	CGSHiEE_t09420	-	^{13 Val tRNA}
1157323	1157397	-	75	148825133	CGSHiEE_t09422	-	^{05 Gln tRNA}
1157445	1157519	-	75	148825133	CGSHiEE_t09424	-	^{05 Gln tRNA}
1157548	1157632	-	85	148825133	CGSHiEE_t09426	-	^{15 Leu tRNA}
1157638	1157714	-	77	148825133	CGSHiEE_t09428	-	^{16 Met tRNA}
1462617	1462693	+	77	148825133	CGSHiEE_t09430	-	^{16 Met tRNA}
1627845	1627920	-	76	148825133	CGSHiEE_t09432	-	^{07 Asn tRNA}
1627923	1627998	-	76	148825133	CGSHiEE_t09434	-	^{17 Phe tRNA}
1675760	1675879	-	120	148825133	CGSHiEE_r09318	-	5S ribosomal RNA
1676104	1677826	-	1723	148825133	CGSHiEE_r09342	-	23S ribosomal RNA
1677827	1677947	-	121	148825133	CGSHiEE_r09342	-	intervening sequence
1677948	1678564	-	617	148825133	CGSHiEE_r09342	-	23S ribosomal RNA
1678565	1678676	-	112	148825133	CGSHiEE_r09342	-	intervening sequence
1678677	1679218	-	542	148825133	CGSHiEE_r09342	-	23S ribosomal RNA
1679624	1679699	-	76	148825133	CGSHiEE_t09436	-	^{02 Ala tRNA}
1679785	1679861	-	77	148825133	CGSHiEE_t09438	-	^{14 Ile tRNA}
1679941	1681480	-	1540	148825133	CGSHiEE_r09330	-	16S ribosomal RNA
1699571	1699665	+	95	148825133	CGSHiEE_t09440	-	Sec tRNA
1777253	1777347	+	95	148825133	CGSHiEE_t09442	-	^{08 Ser tRNA}
1777368	1777444	+	77	148825133	CGSHiEE_t09444	-	^{11 Arg tRNA}
1777502	1777578	+	77	148825133	CGSHiEE_t09446	-	^{11 Arg tRNA}
1787499	1787574	-	76	148825133	CGSHiEE_t09448	-	^{12 Thr tRNA}
1787578	1787652	-	75	148825133	CGSHiEE_t09450	-	^{01 Gly tRNA}
1787695	1787779	-	85	148825133	CGSHiEE_t09452	-	^{18 Tyr tRNA}
1787809	1787884	-	76	148825133	CGSHiEE_t09454	-	^{12 Thr tRNA}
1798519	1798638	-	120	148825133	CGSHiEE_r09320	-	5S ribosomal RNA
1798862	1801208	-	2347	148825133	CGSHiEE_r09344	-	23S ribosomal RNA
1801209	1801320	-	112	148825133	CGSHiEE_r09344	-	intervening sequence
1801321	1801862	-	542	148825133	CGSHiEE_r09344	-	23S ribosomal RNA
1802133	1802208	-	76	148825133	CGSHiEE_t09456	-	^{04 Glu tRNA}
1802340	1803880	-	1541	148825133	CGSHiEE_r09332	-	16S ribosomal RNA