Геном прокариот/Материалы:NC 009632

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009632            2906507 bp    DNA     circular BCT 03-JUL-2007
   DEFINITION  Staphylococcus aureus subsp. aureus JH1, complete genome.
   ACCESSION   NC_009632
   VERSION     NC_009632.1  GI:150392480
   KEYWORDS    .
   SOURCE      Staphylococcus aureus subsp. aureus JH1
     ORGANISM  Staphylococcus aureus subsp. aureus JH1
               Bacteria; Firmicutes; Bacillales; Staphylococcus.
   REFERENCE   1  (bases 1 to 2906507)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Tomasz,A. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Staphylococcus aureus subsp.
               aureus JH1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2906507)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2906507)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Tomasz,A. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (20-JUN-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000736.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001072
               Source DNA and bacteria available from Alexander Tomasz
               (tomasz@rockefeller.edu)
               Contacts: Alexander Tomasz (tomasz@rockefeller.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
24284	24358	+	75	150392480	SaurJH1_R0001	-	^{04 Glu tRNA}
24366	24438	+	73	150392480	SaurJH1_R0002	-	^{06 Asp tRNA}
532244	532336	+	93	150392480	SaurJH1_R0003	-	^{08 Ser tRNA}
536869	536969	+	101	150392480	SaurJH1_R0004	-	SRP RNA; RNA component of signal recognition particle
541500	543044	+	1545	150392480	SaurJH1_R0005	-	16S ribosomal RNA
543411	546333	+	2923	150392480	SaurJH1_R0006	-	23S ribosomal RNA
546408	546521	+	114	150392480	SaurJH1_R0007	-	5S ribosomal RNA
584840	584953	+	114	150392480	SaurJH1_R0008	-	5S ribosomal RNA
584965	585040	+	76	150392480	SaurJH1_R0009	-	^{13 Val tRNA}
585057	585132	+	76	150392480	SaurJH1_R0010	-	^{12 Thr tRNA}
585139	585211	+	73	150392480	SaurJH1_R0011	-	^{10 Lys tRNA}
585245	585319	+	75	150392480	SaurJH1_R0012	-	^{01 Gly tRNA}
585327	585415	+	89	150392480	SaurJH1_R0013	-	^{15 Leu tRNA}
585421	585497	+	77	150392480	SaurJH1_R0014	-	^{11 Arg tRNA}
585518	585591	+	74	150392480	SaurJH1_R0015	-	^{03 Pro tRNA}
585615	585690	+	76	150392480	SaurJH1_R0016	-	^{02 Ala tRNA}
585819	587363	+	1545	150392480	SaurJH1_R0017	-	16S ribosomal RNA
587458	587534	+	77	150392480	SaurJH1_R0018	-	^{14 Ile tRNA}
587702	590624	+	2923	150392480	SaurJH1_R0019	-	23S ribosomal RNA
590699	590812	+	114	150392480	SaurJH1_R0020	-	5S ribosomal RNA
591031	592575	+	1545	150392480	SaurJH1_R0021	-	16S ribosomal RNA
592880	595802	+	2923	150392480	SaurJH1_R0022	-	23S ribosomal RNA
595877	595990	+	114	150392480	SaurJH1_R0023	-	5S ribosomal RNA
869239	869310	-	72	150392480	SaurJH1_R0024	-	^{11 Arg tRNA}
885496	885856	+	361	150392480	SaurJH1_R0025	-	tmRNA
1127147	1127235	-	89	150392480	SaurJH1_R0026	-	^{08 Ser tRNA}
1127238	1127312	-	75	150392480	SaurJH1_R0027	-	^{07 Asn tRNA}
1276646	1276719	-	74	150392480	SaurJH1_R0028	-	^{11 Arg tRNA}
2003968	2004056	-	89	150392480	SaurJH1_R0029	-	^{08 Ser tRNA}
2004111	2004182	-	72	150392480	SaurJH1_R0030	-	^{04 Glu tRNA}
2004184	2004258	-	75	150392480	SaurJH1_R0031	-	^{07 Asn tRNA}
2004276	2004349	-	74	150392480	SaurJH1_R0032	-	^{01 Gly tRNA}
2004365	2004440	-	76	150392480	SaurJH1_R0033	-	^{09 His tRNA}
2004454	2004526	-	73	150392480	SaurJH1_R0034	-	^{17 Phe tRNA}
2004543	2004618	-	76	150392480	SaurJH1_R0035	-	^{06 Asp tRNA}
2004640	2004713	-	74	150392480	SaurJH1_R0036	-	^{16 Met tRNA}
2039859	2039942	-	84	150392480	SaurJH1_R0037	-	^{15 Leu tRNA}
2039981	2040055	-	75	150392480	SaurJH1_R0038	-	Xaa tRNA
2040159	2040233	-	75	150392480	SaurJH1_R0039	-	^{01 Gly tRNA}
2040241	2040314	-	74	150392480	SaurJH1_R0040	-	^{19 Cys tRNA}
2040320	2040391	-	72	150392480	SaurJH1_R0041	-	^{05 Gln tRNA}
2040403	2040475	-	73	150392480	SaurJH1_R0042	-	^{09 His tRNA}
2040478	2040551	-	74	150392480	SaurJH1_R0043	-	^{20 Trp tRNA}
2040567	2040647	-	81	150392480	SaurJH1_R0044	-	^{18 Tyr tRNA}
2040653	2040728	-	76	150392480	SaurJH1_R0045	-	^{12 Thr tRNA}
2040736	2040808	-	73	150392480	SaurJH1_R0046	-	^{17 Phe tRNA}
2040827	2040902	-	76	150392480	SaurJH1_R0047	-	^{06 Asp tRNA}
2040924	2040997	-	74	150392480	SaurJH1_R0048	-	^{16 Met tRNA}
2041012	2041104	-	93	150392480	SaurJH1_R0049	-	^{08 Ser tRNA}
2041143	2041218	-	76	150392480	SaurJH1_R0050	-	^{06 Asp tRNA}
2041229	2041318	-	90	150392480	SaurJH1_R0051	-	^{08 Ser tRNA}
2041328	2041401	-	74	150392480	SaurJH1_R0052	-	^{16 Met tRNA}
2041427	2041503	-	77	150392480	SaurJH1_R0053	-	^{16 Met tRNA}
2041525	2041600	-	76	150392480	SaurJH1_R0054	-	^{02 Ala tRNA}
2041618	2041691	-	74	150392480	SaurJH1_R0055	-	^{03 Pro tRNA}
2041701	2041774	-	74	150392480	SaurJH1_R0056	-	^{11 Arg tRNA}
2041793	2041881	-	89	150392480	SaurJH1_R0057	-	^{15 Leu tRNA}
2041892	2041966	-	75	150392480	SaurJH1_R0058	-	^{01 Gly tRNA}
2041970	2042051	-	82	150392480	SaurJH1_R0059	-	^{15 Leu tRNA}
2042055	2042130	-	76	150392480	SaurJH1_R0060	-	^{10 Lys tRNA}
2042136	2042211	-	76	150392480	SaurJH1_R0061	-	^{12 Thr tRNA}
2042228	2042303	-	76	150392480	SaurJH1_R0062	-	^{13 Val tRNA}
2042314	2042427	-	114	150392480	SaurJH1_R0063	-	5S ribosomal RNA
2042502	2045424	-	2923	150392480	SaurJH1_R0064	-	23S ribosomal RNA
2045638	2045713	-	76	150392480	SaurJH1_R0065	-	^{02 Ala tRNA}
2045732	2045808	-	77	150392480	SaurJH1_R0066	-	^{14 Ile tRNA}
2045900	2047444	-	1545	150392480	SaurJH1_R0067	-	16S ribosomal RNA
2215264	2215377	-	114	150392480	SaurJH1_R0068	-	5S ribosomal RNA
2215452	2218374	-	2923	150392480	SaurJH1_R0069	-	23S ribosomal RNA
2218846	2220390	-	1545	150392480	SaurJH1_R0070	-	16S ribosomal RNA
2220516	2220589	-	74	150392480	SaurJH1_R0071	-	^{01 Gly tRNA}
2220608	2220693	-	86	150392480	SaurJH1_R0072	-	^{15 Leu tRNA}
2329835	2329910	-	76	150392480	SaurJH1_R0073	-	^{10 Lys tRNA}
2329914	2329988	-	75	150392480	SaurJH1_R0074	-	^{05 Gln tRNA}
2329998	2330081	-	84	150392480	SaurJH1_R0075	-	^{18 Tyr tRNA}
2330111	2330186	-	76	150392480	SaurJH1_R0076	-	^{13 Val tRNA}
2330194	2330265	-	72	150392480	SaurJH1_R0077	-	^{04 Glu tRNA}
2330267	2330341	-	75	150392480	SaurJH1_R0078	-	^{07 Asn tRNA}
2330351	2330464	-	114	150392480	SaurJH1_R0079	-	5S ribosomal RNA
2330539	2333461	-	2923	150392480	SaurJH1_R0080	-	23S ribosomal RNA
2333933	2335477	-	1545	150392480	SaurJH1_R0081	-	16S ribosomal RNA