Геном прокариот/Материалы:NC 009655

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009655            2319663 bp    DNA     circular BCT 25-JUL-2007
   DEFINITION  Actinobacillus succinogenes 130Z, complete genome.
   ACCESSION   NC_009655
   VERSION     NC_009655.1  GI:152977688
   KEYWORDS    .
   SOURCE      Actinobacillus succinogenes 130Z
     ORGANISM  Actinobacillus succinogenes 130Z
               Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
               Pasteurellaceae; Actinobacillus.
   REFERENCE   1  (bases 1 to 2319663)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Lowry,S., Clum,A., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Vieille,C.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Actinobacillus succinogenes 130Z
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2319663)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2319663)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Lowry,S., Clum,A., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Vieille,C.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUN-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000746.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000129
               Source DNA and bacteria available from Claire Vieille
               (vieille@msu.edu)
               Contacts: Claire Vieille (vieille@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
33508	33583	-	76	152977688	Asuc_R0001	-	^{20 Trp tRNA}
33602	33678	-	77	152977688	Asuc_R0002	-	^{06 Asp tRNA}
33689	33803	-	115	152977688	Asuc_R0003	-	5S ribosomal RNA
33855	33969	-	115	152977688	Asuc_R0004	-	5S ribosomal RNA
34076	37071	-	2996	152977688	Asuc_R0005	-	23S ribosomal RNA
37365	37440	-	76	152977688	Asuc_R0006	-	^{02 Ala tRNA}
37511	37587	-	77	152977688	Asuc_R0007	-	^{14 Ile tRNA}
37671	39205	-	1535	152977688	Asuc_R0008	-	16S ribosomal RNA
111891	111966	-	76	152977688	Asuc_R0009	-	^{12 Thr tRNA}
111971	112045	-	75	152977688	Asuc_R0010	-	^{01 Gly tRNA}
112082	112166	-	85	152977688	Asuc_R0011	-	^{18 Tyr tRNA}
112194	112269	-	76	152977688	Asuc_R0012	-	^{12 Thr tRNA}
319151	319265	-	115	152977688	Asuc_R0013	-	5S ribosomal RNA
319372	322367	-	2996	152977688	Asuc_R0014	-	23S ribosomal RNA
322661	322736	-	76	152977688	Asuc_R0015	-	^{02 Ala tRNA}
322807	322883	-	77	152977688	Asuc_R0016	-	^{14 Ile tRNA}
322967	324501	-	1535	152977688	Asuc_R0017	-	16S ribosomal RNA
334332	334422	-	91	152977688	Asuc_R0018	-	Sec tRNA
562856	564391	+	1536	152977688	Asuc_R0019	-	16S ribosomal RNA
564543	564618	+	76	152977688	Asuc_R0020	-	^{04 Glu tRNA}
564837	567832	+	2996	152977688	Asuc_R0021	-	23S ribosomal RNA
567939	568053	+	115	152977688	Asuc_R0022	-	5S ribosomal RNA
596425	596500	+	76	152977688	Asuc_R0023	-	^{17 Phe tRNA}
596506	596581	+	76	152977688	Asuc_R0024	-	^{07 Asn tRNA}
613532	613607	-	76	152977688	Asuc_R0025	-	^{02 Ala tRNA}
615299	615374	+	76	152977688	Asuc_R0026	-	^{13 Val tRNA}
615426	615501	+	76	152977688	Asuc_R0027	-	^{13 Val tRNA}
615616	615691	+	76	152977688	Asuc_R0028	-	^{13 Val tRNA}
742664	742757	+	94	152977688	Asuc_R0029	-	^{08 Ser tRNA}
742800	742876	+	77	152977688	Asuc_R0030	-	^{11 Arg tRNA}
742943	743019	+	77	152977688	Asuc_R0031	-	^{11 Arg tRNA}
769187	769262	-	76	152977688	Asuc_R0032	-	^{12 Thr tRNA}
821154	821230	-	77	152977688	Asuc_R0033	-	^{11 Arg tRNA}
821283	821359	-	77	152977688	Asuc_R0034	-	^{03 Pro tRNA}
911481	913016	+	1536	152977688	Asuc_R0035	-	16S ribosomal RNA
913168	913243	+	76	152977688	Asuc_R0036	-	^{04 Glu tRNA}
913462	916457	+	2996	152977688	Asuc_R0037	-	23S ribosomal RNA
916564	916678	+	115	152977688	Asuc_R0038	-	5S ribosomal RNA
938187	938263	-	77	152977688	Asuc_R0039	-	^{06 Asp tRNA}
938298	938374	-	77	152977688	Asuc_R0040	-	^{06 Asp tRNA}
973632	973721	-	90	152977688	Asuc_R0041	-	^{08 Ser tRNA}
998788	998864	-	77	152977688	Asuc_R0042	-	^{16 Met tRNA}
1024112	1024198	+	87	152977688	Asuc_R0043	-	^{15 Leu tRNA}
1071626	1071701	-	76	152977688	Asuc_R0044	-	^{01 Gly tRNA}
1083338	1083427	+	90	152977688	Asuc_R0045	-	^{08 Ser tRNA}
1130125	1130201	+	77	152977688	Asuc_R0046	-	^{11 Arg tRNA}
1130231	1130306	+	76	152977688	Asuc_R0047	-	^{09 His tRNA}
1130328	1130404	+	77	152977688	Asuc_R0048	-	^{03 Pro tRNA}
1130551	1132085	+	1535	152977688	Asuc_R0049	-	16S ribosomal RNA
1132169	1132245	+	77	152977688	Asuc_R0050	-	^{14 Ile tRNA}
1132316	1132391	+	76	152977688	Asuc_R0051	-	^{02 Ala tRNA}
1132685	1135680	+	2996	152977688	Asuc_R0052	-	23S ribosomal RNA
1135787	1135901	+	115	152977688	Asuc_R0053	-	5S ribosomal RNA
1180496	1182031	+	1536	152977688	Asuc_R0054	-	16S ribosomal RNA
1182183	1182258	+	76	152977688	Asuc_R0055	-	^{04 Glu tRNA}
1182477	1185472	+	2996	152977688	Asuc_R0056	-	23S ribosomal RNA
1185579	1185693	+	115	152977688	Asuc_R0057	-	5S ribosomal RNA
1202474	1202550	+	77	152977688	Asuc_R0058	-	^{16 Met tRNA}
1202570	1202652	+	83	152977688	Asuc_R0059	-	^{15 Leu tRNA}
1202681	1202755	+	75	152977688	Asuc_R0060	-	^{05 Gln tRNA}
1202798	1202872	+	75	152977688	Asuc_R0061	-	^{05 Gln tRNA}
1202915	1202989	+	75	152977688	Asuc_R0062	-	^{05 Gln tRNA}
1206949	1207024	+	76	152977688	Asuc_R0063	-	^{07 Asn tRNA}
1215624	1215740	-	117	152977688	Asuc_R0064	-	SRP RNA; RNA component of signal recognition particle
1242492	1242568	+	77	152977688	Asuc_R0065	-	^{16 Met tRNA}
1365161	1365236	-	76	152977688	Asuc_R0066	-	^{10 Lys tRNA}
1402662	1403027	-	366	152977688	Asuc_R0067	-	tmRNA
1523540	1523614	+	75	152977688	Asuc_R0068	-	^{10 Lys tRNA}
1582718	1582794	-	77	152977688	Asuc_R0069	-	^{13 Val tRNA}
1657240	1657325	-	86	152977688	Asuc_R0070	-	^{15 Leu tRNA}
1833882	1834174	-	293	152977688	Asuc_R0071	-	RNA component of RNaseP
1876119	1876204	+	86	152977688	Asuc_R0072	-	^{15 Leu tRNA}
1922674	1922749	+	76	152977688	Asuc_R0073	-	^{01 Gly tRNA}
1922779	1922865	+	87	152977688	Asuc_R0074	-	^{15 Leu tRNA}
1968993	1969068	-	76	152977688	Asuc_R0075	-	^{10 Lys tRNA}
1969097	1969172	-	76	152977688	Asuc_R0076	-	^{10 Lys tRNA}
1969202	1969277	-	76	152977688	Asuc_R0077	-	^{10 Lys tRNA}
2030325	2030400	+	76	152977688	Asuc_R0078	-	^{01 Gly tRNA}
2030418	2030504	+	87	152977688	Asuc_R0079	-	^{15 Leu tRNA}
2030564	2030637	+	74	152977688	Asuc_R0080	-	^{19 Cys tRNA}
2211790	2211865	-	76	152977688	Asuc_R0081	-	^{16 Met tRNA}
2261239	2261328	-	90	152977688	Asuc_R0082	-	^{08 Ser tRNA}