Геном прокариот/Материалы:NC 009667

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009667            2887297 bp    DNA     circular BCT 25-JUL-2007
   DEFINITION  Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence.
   ACCESSION   NC_009667
   VERSION     NC_009667.1  GI:153007346
   KEYWORDS    .
   SOURCE      Ochrobactrum anthropi ATCC 49188
     ORGANISM  Ochrobactrum anthropi ATCC 49188
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Brucellaceae; Ochrobactrum.
   REFERENCE   1  (bases 1 to 2887297)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M.,
               Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Garcia,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 1 of Ochrobactrum anthropi ATCC
               49188
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2887297)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M.,
               Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Garcia,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (10-JUL-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   REFERENCE   3  (bases 1 to 2887297)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000758.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2773013
               Source DNA available from Emilio Garcia (garcia12@llnl.gov)
               Bacteria available from ATCC: ATCC 49188
               Contacts: Emilio Garcia (garcia12@llnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional Note: This projects consists of 2 chromosomes and 4
               plasmids.
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
21484	21589	+	106	153007346	Oant_R0001	-	SRP RNA; RNA component of signal recognition particle
34671	34746	+	76	153007346	Oant_R0002	-	^{02 Ala tRNA}
224559	224635	+	77	153007346	Oant_R0003	-	^{03 Pro tRNA}
338356	338431	-	76	153007346	Oant_R0004	-	^{17 Phe tRNA}
344746	344820	+	75	153007346	Oant_R0005	-	^{12 Thr tRNA}
353496	353572	-	77	153007346	Oant_R0006	-	^{11 Arg tRNA}
726699	726773	+	75	153007346	Oant_R0007	-	^{05 Gln tRNA}
935321	935397	-	77	153007346	Oant_R0008	-	^{11 Arg tRNA}
1051227	1051311	-	85	153007346	Oant_R0009	-	^{15 Leu tRNA}
1084028	1085503	+	1476	153007346	Oant_R0010	-	16S ribosomal RNA
1085777	1085853	+	77	153007346	Oant_R0011	-	^{14 Ile tRNA}
1085865	1085940	+	76	153007346	Oant_R0012	-	^{02 Ala tRNA}
1086513	1089117	+	2605	153007346	Oant_R0013	-	23S ribosomal RNA
1089314	1089427	+	114	153007346	Oant_R0014	-	5S ribosomal RNA
1089481	1089557	+	77	153007346	Oant_R0015	-	^{16 Met tRNA}
1096920	1097009	-	90	153007346	Oant_R0016	-	^{08 Ser tRNA}
1312035	1312109	+	75	153007346	Oant_R0017	-	^{04 Glu tRNA}
1346251	1347726	+	1476	153007346	Oant_R0018	-	16S ribosomal RNA
1348000	1348076	+	77	153007346	Oant_R0019	-	^{14 Ile tRNA}
1348088	1348163	+	76	153007346	Oant_R0020	-	^{02 Ala tRNA}
1348736	1351340	+	2605	153007346	Oant_R0021	-	23S ribosomal RNA
1351537	1351650	+	114	153007346	Oant_R0022	-	5S ribosomal RNA
1351704	1351780	+	77	153007346	Oant_R0023	-	^{16 Met tRNA}
1355690	1355764	-	75	153007346	Oant_R0024	-	^{01 Gly tRNA}
1388802	1388891	-	90	153007346	Oant_R0025	-	^{08 Ser tRNA}
1405999	1406085	-	87	153007346	Oant_R0026	-	^{15 Leu tRNA}
1640246	1640322	-	77	153007346	Oant_R0027	-	^{16 Met tRNA}
1779957	1780033	+	77	153007346	Oant_R0028	-	^{16 Met tRNA}
1818979	1819342	+	364	153007346	Oant_R0029	-	RNA component of RNaseP
1881787	1882116	-	330	153007346	Oant_R0030	-	tmRNA
1947096	1947171	-	76	153007346	Oant_R0031	-	^{10 Lys tRNA}
2015201	2015275	-	75	153007346	Oant_R0032	-	^{04 Glu tRNA}
2015422	2015496	-	75	153007346	Oant_R0033	-	^{04 Glu tRNA}
2040545	2040629	+	85	153007346	Oant_R0034	-	^{18 Tyr tRNA}
2040654	2040727	+	74	153007346	Oant_R0035	-	^{01 Gly tRNA}
2042108	2042183	+	76	153007346	Oant_R0036	-	^{20 Trp tRNA}
2168687	2168760	-	74	153007346	Oant_R0037	-	^{01 Gly tRNA}
2245163	2245248	-	86	153007346	Oant_R0038	-	^{15 Leu tRNA}
2269141	2269225	+	85	153007346	Oant_R0039	-	^{15 Leu tRNA}
2333924	2334000	-	77	153007346	Oant_R0040	-	^{11 Arg tRNA}
2342165	2342239	-	75	153007346	Oant_R0041	-	^{13 Val tRNA}
2370594	2370669	+	76	153007346	Oant_R0042	-	^{12 Thr tRNA}
2443445	2443519	-	75	153007346	Oant_R0043	-	^{16 Met tRNA}
2451468	2451550	-	83	153007346	Oant_R0044	-	^{15 Leu tRNA}
2550612	2550688	-	77	153007346	Oant_R0045	-	^{06 Asp tRNA}
2550934	2551010	-	77	153007346	Oant_R0046	-	^{06 Asp tRNA}
2606733	2606808	-	76	153007346	Oant_R0047	-	^{13 Val tRNA}
2641458	2641534	+	77	153007346	Oant_R0048	-	^{03 Pro tRNA}
2697238	2697314	-	77	153007346	Oant_R0049	-	^{11 Arg tRNA}
2697900	2697976	-	77	153007346	Oant_R0050	-	^{03 Pro tRNA}
2773282	2773372	+	91	153007346	Oant_R0051	-	^{08 Ser tRNA}