Геном прокариот/Материалы:NC 009675

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009675            5277990 bp    DNA     circular BCT 25-JUL-2007
   DEFINITION  Anaeromyxobacter sp. Fw109-5, complete genome.
   ACCESSION   NC_009675
   VERSION     NC_009675.1  GI:153002879
   KEYWORDS    .
   SOURCE      Anaeromyxobacter sp. Fw109-5
     ORGANISM  Anaeromyxobacter sp. Fw109-5
               Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales;
               Cystobacterineae; Myxococcaceae; Anaeromyxobacter.
   REFERENCE   1  (bases 1 to 5277990)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Lykidis,A., Fields,M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Anaeromyxobacter sp. Fw109-5
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5277990)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5277990)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Lykidis,A., Fields,M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (12-JUL-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000769.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002939
               Source DNA and bacteria available from Matthew Fields
               (matthew.fields@erc.montana.edu)
               Contacts: Matthew Fields (matthew.fields@erc.montana.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
7872	7945	+	74	153002879	Anae109_R0001	-	^{05 Gln tRNA}
21809	21881	+	73	153002879	Anae109_R0002	-	^{17 Phe tRNA}
688710	688786	-	77	153002879	Anae109_R0003	-	^{06 Asp tRNA}
688803	688874	-	72	153002879	Anae109_R0004	-	^{13 Val tRNA}
719011	719094	-	84	153002879	Anae109_R0005	-	^{15 Leu tRNA}
865621	865693	+	73	153002879	Anae109_R0006	-	^{16 Met tRNA}
1070068	1070143	-	76	153002879	Anae109_R0007	-	^{02 Ala tRNA}
1232384	1232457	-	74	153002879	Anae109_R0008	-	^{03 Pro tRNA}
1357057	1357128	+	72	153002879	Anae109_R0009	-	^{19 Cys tRNA}
1429611	1429684	+	74	153002879	Anae109_R0010	-	^{05 Gln tRNA}
1429752	1429826	+	75	153002879	Anae109_R0011	-	^{04 Glu tRNA}
1607905	1607980	+	76	153002879	Anae109_R0012	-	^{02 Ala tRNA}
1745420	1745496	+	77	153002879	Anae109_R0013	-	^{16 Met tRNA}
2138288	2138359	+	72	153002879	Anae109_R0014	-	^{13 Val tRNA}
2230996	2231090	-	95	153002879	Anae109_R0015	-	Sec tRNA
2249904	2249977	-	74	153002879	Anae109_R0016	-	^{16 Met tRNA}
2293797	2293868	+	72	153002879	Anae109_R0017	-	^{13 Val tRNA}
2330892	2330967	-	76	153002879	Anae109_R0018	-	^{12 Thr tRNA}
2529306	2529381	-	76	153002879	Anae109_R0019	-	^{20 Trp tRNA}
2530828	2530903	-	76	153002879	Anae109_R0020	-	^{12 Thr tRNA}
2530932	2531007	-	76	153002879	Anae109_R0021	-	^{01 Gly tRNA}
2531050	2531132	-	83	153002879	Anae109_R0022	-	^{18 Tyr tRNA}
2531189	2531264	-	76	153002879	Anae109_R0023	-	^{12 Thr tRNA}
2561560	2561643	+	84	153002879	Anae109_R0024	-	^{15 Leu tRNA}
2584372	2584453	+	82	153002879	Anae109_R0025	-	^{15 Leu tRNA}
2725647	2725720	-	74	153002879	Anae109_R0026	-	^{11 Arg tRNA}
2960257	2960332	+	76	153002879	Anae109_R0027	-	^{07 Asn tRNA}
2977942	2978057	-	116	153002879	Anae109_R0028	-	5S ribosomal RNA
2978202	2981180	-	2979	153002879	Anae109_R0029	-	23S ribosomal RNA
2981377	2981452	-	76	153002879	Anae109_R0030	-	^{02 Ala tRNA}
2981474	2981551	-	78	153002879	Anae109_R0031	-	^{14 Ile tRNA}
2981747	2983296	-	1550	153002879	Anae109_R0032	-	16S ribosomal RNA
3063372	3063444	+	73	153002879	Anae109_R0033	-	^{10 Lys tRNA}
3074417	3074489	+	73	153002879	Anae109_R0034	-	^{04 Glu tRNA}
3181195	3181271	+	77	153002879	Anae109_R0035	-	^{11 Arg tRNA}
3237668	3238017	+	350	153002879	Anae109_R0036	-	tmRNA
3901308	3901381	-	74	153002879	Anae109_R0037	-	^{03 Pro tRNA}
3923555	3923640	+	86	153002879	Anae109_R0038	-	^{15 Leu tRNA}
3964902	3965017	-	116	153002879	Anae109_R0039	-	5S ribosomal RNA
3965161	3968139	-	2979	153002879	Anae109_R0040	-	23S ribosomal RNA
3968336	3968411	-	76	153002879	Anae109_R0041	-	^{02 Ala tRNA}
3968433	3968510	-	78	153002879	Anae109_R0042	-	^{14 Ile tRNA}
3968706	3970255	-	1550	153002879	Anae109_R0043	-	16S ribosomal RNA
4024732	4024813	-	82	153002879	Anae109_R0044	-	^{15 Leu tRNA}
4025443	4025515	-	73	153002879	Anae109_R0045	-	^{10 Lys tRNA}
4025631	4025707	-	77	153002879	Anae109_R0046	-	^{11 Arg tRNA}
4025728	4025803	-	76	153002879	Anae109_R0047	-	^{09 His tRNA}
4025846	4025922	-	77	153002879	Anae109_R0048	-	^{11 Arg tRNA}
4025984	4026057	-	74	153002879	Anae109_R0049	-	^{03 Pro tRNA}
4295655	4295729	-	75	153002879	Anae109_R0050	-	^{01 Gly tRNA}
4353549	4353876	-	328	153002879	Anae109_R0051	-	RNA component of RNaseP
4385642	4385752	-	111	153002879	Anae109_R0052	-	SRP RNA; RNA component of signal recognition particle
4385814	4385903	-	90	153002879	Anae109_R0053	-	^{08 Ser tRNA}
4385972	4386059	-	88	153002879	Anae109_R0054	-	^{08 Ser tRNA}
4640041	4640130	+	90	153002879	Anae109_R0055	-	^{08 Ser tRNA}
4640152	4640241	+	90	153002879	Anae109_R0056	-	^{08 Ser tRNA}
4640300	4640376	+	77	153002879	Anae109_R0057	-	^{11 Arg tRNA}
4945835	4945910	+	76	153002879	Anae109_R0058	-	^{01 Gly tRNA}