Геном прокариот/Материалы:NC 002570

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_002570            4202352 bp    DNA     circular BCT 03-DEC-2005
   DEFINITION  Bacillus halodurans C-125, complete genome.
   ACCESSION   NC_002570
   VERSION     NC_002570.2  GI:57596592
   KEYWORDS    .
   SOURCE      Bacillus halodurans C-125
     ORGANISM  Bacillus halodurans C-125
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus.
   REFERENCE   1  (bases 1 to 4202352)
     AUTHORS   Takami,H., Nakasone,K., Takaki,Y., Maeno,G., Sasaki,R., Masui,N.,
               Fuji,F., Hirama,C., Nakamura,Y., Ogasawara,N., Kuhara,S. and
               Horikoshi,K.
     TITLE     Complete genome sequence of the alkaliphilic bacterium Bacillus
               halodurans and genomic sequence comparison with Bacillus subtilis
     JOURNAL   Nucleic Acids Res. 28 (21), 4317-4331 (2000)
      PUBMED   11058132
   REFERENCE   2  (bases 1 to 4202352)
     AUTHORS   Nakasone,K., Masui,N., Takaki,Y., Sasaki,R., Maeno,G., Sakiyama,T.,
               Hirama,C., Fuji,F. and Takami,H.
     TITLE     Characterization and comparative study of the rrn operons of
               alkaliphilic Bacillus halodurans C-125
     JOURNAL   Extremophiles 4 (4), 209-214 (2000)
      PUBMED   10972189
   REFERENCE   3  (sites)
     AUTHORS   Takami,H. and Horikoshi,K.
     TITLE     Analysis of the genome of an alkaliphilic Bacillus strain from an
               industrial point of view
     JOURNAL   Extremophiles 4 (2), 99-108 (2000)
      PUBMED   10805564
   REFERENCE   4  (sites)
     AUTHORS   Takami,H., Takaki,Y., Nakasone,K., Sakiyama,T., Maeno,G.,
               Sasaki,R., Hirama,C., Fuji,F. and Masui,N.
     TITLE     Genetic analysis of the chromosome of alkaliphilic Bacillus
               halodurans C-125
     JOURNAL   Extremophiles 3 (3), 227-233 (1999)
      PUBMED   10484179
   REFERENCE   5  (sites)
     AUTHORS   Takami,H., Masui,N., Nakasone,K. and Horikoshi,K.
     TITLE     Replication origin region of the chromosome of alkaliphilic
               Bacillus halodurans C-125
     JOURNAL   Biosci. Biotechnol. Biochem. 63 (6), 1134-1137 (1999)
      PUBMED   10427704
   REFERENCE   6  (sites)
     AUTHORS   Takami,H., Takaki,Y., Nakasone,K., Hirama,C., Inoue,A. and
               Horikoshi,K.
     TITLE     Sequence analysis of a 32-kb region including the major ribosomal
               protein gene clusters from alkaliphilic Bacillus sp. strain C-125
     JOURNAL   Biosci. Biotechnol. Biochem. 63 (2), 452-455 (1999)
      PUBMED   10192928
   REFERENCE   7  (sites)
     AUTHORS   Takami,H., Nakasone,K., Ogasawara,N., Hirama,C., Nakamura,Y.,
               Masui,N., Fuji,F., Takaki,Y., Inoue,A. and Horikoshi,K.
     TITLE     Sequencing of three lambda clones from the genome of alkaliphilic
               Bacillus sp. strain C-125
     JOURNAL   Extremophiles 3 (1), 29-34 (1999)
      PUBMED   10086842
   REFERENCE   8  (sites)
     AUTHORS   Takami,H., Nakasone,K., Hirama,C., Takaki,Y., Masui,N., Fuji,F.,
               Nakamura,Y. and Inoue,A.
     TITLE     An improved physical and genetic map of the genome of alkaliphilic
               Bacillus sp. C-125
     JOURNAL   Extremophiles 3 (1), 21-28 (1999)
      PUBMED   10086841
   REFERENCE   9  (sites)
     AUTHORS   Takami,H.
     TITLE     Genome analysis of facultatively alkalihilic Bacillus halodurans
               C-125
     JOURNAL   (in) Extremophiles in deep-sea environments (Ed.);
               . HORIKOSHI, K. TSUJII;
               : 249-284; Springer-Verlag (1999)
   REFERENCE   10 (sites)
     AUTHORS   Takami,H. and Horikoshi,K.
     TITLE     Reidentification of facultatively alkaliphilic Bacillus sp. C-125
               to Bacillus halodurans
     JOURNAL   Biosci. Biotechnol. Biochem. 63, 943-945 (1999)
   REFERENCE   11 (bases 1 to 4202352)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-SEP-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   12 (bases 1 to 4202352)
     CONSRTM   NCBI Microbial Genomes Annotation Project
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUN-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   13 (bases 1 to 4202352)
     AUTHORS   Takami,H. and Takaki,Y.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-MAR-2000) Japan Marine Science and Technology Center,
               Deep-sea Microorganisms Research Group, 2-15 Natsushima, Yokosuka,
               Kanagawa 237-0061, Japan
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from BA000004.
               On Jan 12, 2005 this sequence version replaced gi:15612563.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
22819	24370	+	1552	57596592	BHr001	-	16S ribosomal RNA
25054	27992	+	2939	57596592	BHr002	-	23S ribosomal RNA
28401	28516	+	116	57596592	BHr003	-	5S ribosomal RNA
45480	45572	+	93	57596592	BHt001	-	^{08 Ser tRNA}
50588	52139	+	1552	57596592	BHr004	-	16S ribosomal RNA
52991	55929	+	2939	57596592	BHr005	-	23S ribosomal RNA
56235	56350	+	116	57596592	BHr006	-	5S ribosomal RNA
94883	94956	+	74	57596592	BHt002	-	^{16 Met tRNA}
117374	118925	+	1552	57596592	BHr007	-	16S ribosomal RNA
119378	119454	+	77	57596592	BHt003	-	^{14 Ile tRNA}
119466	119541	+	76	57596592	BHt004	-	^{02 Ala tRNA}
119924	122862	+	2939	57596592	BHr008	-	23S ribosomal RNA
123273	123388	+	116	57596592	BHr009	-	5S ribosomal RNA
123398	123473	+	76	57596592	BHt005	-	^{13 Val tRNA}
123515	123587	+	73	57596592	BHt006	-	^{12 Thr tRNA}
123595	123670	+	76	57596592	BHt007	-	^{10 Lys tRNA}
123679	123764	+	86	57596592	BHt008	-	^{15 Leu tRNA}
123771	123845	+	75	57596592	BHt009	-	^{01 Gly tRNA}
123869	123957	+	89	57596592	BHt010	-	^{15 Leu tRNA}
123973	124049	+	77	57596592	BHt011	-	^{11 Arg tRNA}
124055	124131	+	77	57596592	BHt012	-	^{03 Pro tRNA}
124135	124210	+	76	57596592	BHt013	-	^{02 Ala tRNA}
124393	125945	+	1553	57596592	BHr010	-	16S ribosomal RNA
126753	129691	+	2939	57596592	BHr011	-	23S ribosomal RNA
129997	130112	+	116	57596592	BHr012	-	5S ribosomal RNA
261929	263480	+	1552	57596592	BHr013	-	16S ribosomal RNA
264163	267101	+	2939	57596592	BHr014	-	23S ribosomal RNA
267406	267521	+	116	57596592	BHr015	-	5S ribosomal RNA
267531	267605	+	75	57596592	BHt014	-	^{07 Asn tRNA}
267613	267685	+	73	57596592	BHt015	-	^{12 Thr tRNA}
282063	282137	+	75	57596592	BHt016	-	^{04 Glu tRNA}
282231	282306	+	76	57596592	BHt017	-	^{13 Val tRNA}
282562	282634	+	73	57596592	BHt018	-	^{12 Thr tRNA}
282656	282740	+	85	57596592	BHt019	-	^{18 Tyr tRNA}
282749	282823	+	75	57596592	BHt020	-	^{05 Gln tRNA}
282887	282962	+	76	57596592	BHt021	-	^{10 Lys tRNA}
282970	283044	+	75	57596592	BHt022	-	^{01 Gly tRNA}
283049	283124	+	76	57596592	BHt023	-	^{02 Ala tRNA}
558019	558093	+	75	57596592	BHt024	-	^{07 Asn tRNA}
558096	558186	+	91	57596592	BHt025	-	^{08 Ser tRNA}
558197	558271	+	75	57596592	BHt026	-	^{04 Glu tRNA}
558305	558380	+	76	57596592	BHt027	-	^{13 Val tRNA}
558388	558464	+	77	57596592	BHt028	-	^{06 Asp tRNA}
558492	558574	+	83	57596592	BHt029	-	^{15 Leu tRNA}
558590	558673	+	84	57596592	BHt030	-	^{15 Leu tRNA}
558683	558759	+	77	57596592	BHt031	-	^{11 Arg tRNA}
558780	558856	+	77	57596592	BHt032	-	^{03 Pro tRNA}
558863	558936	+	74	57596592	BHt033	-	^{01 Gly tRNA}
558976	559052	+	77	57596592	BHt034	-	^{14 Ile tRNA}
559243	560794	+	1552	57596592	BHr016	-	16S ribosomal RNA
561522	564460	+	2939	57596592	BHr017	-	23S ribosomal RNA
564869	564984	+	116	57596592	BHr018	-	5S ribosomal RNA
577146	577261	+	116	57596592	BHr019	-	5S ribosomal RNA
577380	577453	+	74	57596592	BHt035	-	^{16 Met tRNA}
656197	657748	+	1552	57596592	BHr020	-	16S ribosomal RNA
658205	658281	+	77	57596592	BHt036	-	^{14 Ile tRNA}
658293	658368	+	76	57596592	BHt037	-	^{02 Ala tRNA}
658720	661658	+	2939	57596592	BHr021	-	23S ribosomal RNA
662067	662182	+	116	57596592	BHr022	-	5S ribosomal RNA
1017921	1019473	+	1553	57596592	BHr023	-	16S ribosomal RNA
1020325	1023263	+	2939	57596592	BHr024	-	23S ribosomal RNA
1023672	1023787	+	116	57596592	BHr025	-	5S ribosomal RNA
1023797	1023871	+	75	57596592	BHt038	-	^{07 Asn tRNA}
1023873	1023966	+	94	57596592	BHt039	-	^{08 Ser tRNA}
1023980	1024051	+	72	57596592	BHt040	-	^{04 Glu tRNA}
1024086	1024161	+	76	57596592	BHt041	-	^{13 Val tRNA}
1024337	1024413	+	77	57596592	BHt042	-	^{16 Met tRNA}
1024418	1024494	+	77	57596592	BHt043	-	^{06 Asp tRNA}
1024505	1024580	+	76	57596592	BHt044	-	^{17 Phe tRNA}
1024586	1024661	+	76	57596592	BHt045	-	^{12 Thr tRNA}
1024716	1024800	+	85	57596592	BHt046	-	^{18 Tyr tRNA}
1024812	1024885	+	74	57596592	BHt047	-	^{20 Trp tRNA}
1024904	1024979	+	76	57596592	BHt048	-	^{09 His tRNA}
1024993	1025067	+	75	57596592	BHt049	-	^{05 Gln tRNA}
1025072	1025146	+	75	57596592	BHt050	-	^{01 Gly tRNA}
1025154	1025224	+	71	57596592	BHt051	-	^{19 Cys tRNA}
1025251	1025339	+	89	57596592	BHt052	-	^{15 Leu tRNA}
1025355	1025431	+	77	57596592	BHt053	-	^{11 Arg tRNA}
1039353	1039438	+	86	57596592	BHt054	-	^{15 Leu tRNA}
1491438	1491512	+	75	57596592	BHt055	-	^{07 Asn tRNA}
1491519	1491592	+	74	57596592	BHt056	-	^{16 Met tRNA}
1491644	1491720	+	77	57596592	BHt057	-	^{16 Met tRNA}
1491735	1491827	+	93	57596592	BHt058	-	^{08 Ser tRNA}
2860216	2860288	-	73	57596592	BHt059	-	^{13 Val tRNA}
2876632	2876706	-	75	57596592	BHt060	-	^{11 Arg tRNA}
2948437	2948507	-	71	57596592	BHt061	-	^{01 Gly tRNA}
2948693	2948769	-	77	57596592	BHt062	-	^{11 Arg tRNA}
2948771	2948845	-	75	57596592	BHt063	-	^{01 Gly tRNA}
2948850	2948924	-	75	57596592	BHt064	-	^{05 Gln tRNA}
2948940	2949015	-	76	57596592	BHt065	-	^{09 His tRNA}
2949028	2949112	-	85	57596592	BHt066	-	^{18 Tyr tRNA}
2949118	2949194	-	77	57596592	BHt067	-	^{16 Met tRNA}
2949366	2949458	-	93	57596592	BHt068	-	^{08 Ser tRNA}
2949476	2949551	-	76	57596592	BHt069	-	^{02 Ala tRNA}
2952402	2952473	+	72	57596592	BHt070	-	^{05 Gln tRNA}
3188039	3188115	-	77	57596592	BHt071	-	^{11 Arg tRNA}
3188120	3188193	-	74	57596592	BHt072	-	^{01 Gly tRNA}
3457775	3457850	-	76	57596592	BHt073	-	^{02 Ala tRNA}
3617681	3618103	-	423	57596592	BHs001	-	RNA component of ribonuclease P
3652245	3652598	-	354	57596592	BHs002	-	small stable 10Sa RNA
4163186	4163258	-	73	57596592	BHt074	-	^{12 Thr tRNA}
4163644	4163719	-	76	57596592	BHt075	-	^{17 Phe tRNA}
4163729	4163805	-	77	57596592	BHt076	-	^{06 Asp tRNA}
4163816	4163890	-	75	57596592	BHt077	-	^{04 Glu tRNA}
4163900	4163975	-	76	57596592	BHt078	-	^{10 Lys tRNA}