Материалы:NC 002695

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   LOCUS       NC_002695            5498450 bp    DNA     circular BCT 30-MAR-2007
   DEFINITION  Escherichia coli O157:H7 str. Sakai, complete genome.
   ACCESSION   NC_002695
   VERSION     NC_002695.1  GI:15829254
   KEYWORDS    .
   SOURCE      Escherichia coli O157:H7 str. Sakai
     ORGANISM  Escherichia coli O157:H7 str. Sakai
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Escherichia.
   REFERENCE   1  (sites)
     AUTHORS   Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K.,
               Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T.,
               Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C.,
               Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and
               Shinagawa,H.
     TITLE     Complete genome sequence of enterohemorrhagic Escherichia coli
               O157:H7 and genomic comparison with a laboratory strain K-12
     JOURNAL   DNA Res. 8 (1), 11-22 (2001)
      PUBMED   11258796
     REMARK    Erratum:[DNA Res 2001 Apr 27;8(2):96]
   REFERENCE   2  (sites)
     AUTHORS   Yokoyama,K., Makino,K., Kubota,Y., Watanabe,M., Kimura,S.,
               Yutsudo,C.H., Kurokawa,K., Ishii,K., Hattori,M., Abe,H., Iida,T.,
               Yamamoto,K., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and
               Shinagawa,H.
     TITLE     Complete nucleotide sequence of the prophage VT1-Sakai carrying the
               Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli
               O157:H7 strain derived from the Sakai outbreak
     JOURNAL   Gene 258 (1-2), 127-139 (2000)
      PUBMED   11111050
   REFERENCE   3  (sites)
     AUTHORS   Ohnishi,M., Murata,T., Nakayama,K., Kuhara,S., Hattori,M.,
               Kurokawa,K., Yasunaga,T., Yokoyama,K., Makino,K., Shinagawa,H. and
               Hayashi,T.
     TITLE     Comparative analysis of the whole set of rRNA operons between an
               enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an
               Escherichia coli K-12 strain MG1655
     JOURNAL   Syst. Appl. Microbiol. 23 (3), 315-324 (2000)
      PUBMED   11108008
   REFERENCE   4  (sites)
     AUTHORS   Makino,K., Yokoyama,K., Kubota,Y., Yutsudo,C.H., Kimura,S.,
               Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Iida,T.,
               Yamamoto,K., Ohnishi,M., Hayashi,T., Yasunaga,T., Honda,T.,
               Sasakawa,C. and Shinagawa,H.
     TITLE     Complete nucleotide sequence of the prophage VT2-Sakai carrying the
               verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7
               derived from the Sakai outbreak
     JOURNAL   Genes Genet. Syst. 74 (5), 227-239 (1999)
      PUBMED   10734605
   REFERENCE   5  (bases 1 to 5498450)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   6  (bases 1 to 5498450)
     CONSRTM   NCBI Microbial Genomes Annotation Project
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUN-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from BA000007.
               COMPLETENESS: full length.
               REFSEQ gene predictions performed by GeneMark 2.4/GeneMark.hmm 2.0
               with comparison to original submitter provided annotation.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
227102	228643	+	1542	15829254	ECs5366	-	16S ribosomal RNA
228712	228788	+	77	15829254	ECs5367	-	^{14 Ile tRNA}
228831	228906	+	76	15829254	ECs5368	-	^{02 Ala tRNA}
229090	231992	+	2903	15829254	ECs5369	-	23S ribosomal RNA
232085	232204	+	120	15829254	ECs5370	-	5S ribosomal RNA
232257	232333	+	77	15829254	ECs5371	-	^{06 Asp tRNA}
240481	240557	+	77	15829254	ECs5372	-	^{06 Asp tRNA}
299982	300057	+	76	15829254	ECs5373	-	^{12 Thr tRNA}
542513	542626	+	114	15829254	ECs5378	-	4.5S RNA
657182	657258	+	77	15829254	ECs5379	-	^{11 Arg tRNA}
776591	776665	-	75	15829254	ECs5384	-	^{05 Gln tRNA}
776703	776777	-	75	15829254	ECs5385	-	^{05 Gln tRNA}
776826	776902	-	77	15829254	ECs5386	-	^{16 Met tRNA}
776918	776992	-	75	15829254	ECs5387	-	^{05 Gln tRNA}
777027	777101	-	75	15829254	ECs5388	-	^{05 Gln tRNA}
777125	777209	-	85	15829254	ECs5389	-	^{15 Leu tRNA}
777220	777296	-	77	15829254	ECs5390	-	^{16 Met tRNA}
864979	865054	+	76	15829254	ECs5392	-	^{10 Lys tRNA}
865090	865165	+	76	15829254	ECs5393	-	^{13 Val tRNA}
865168	865243	+	76	15829254	ECs5394	-	^{10 Lys tRNA}
865295	865370	+	76	15829254	ECs5395	-	^{13 Val tRNA}
865374	865449	+	76	15829254	ECs5396	-	^{10 Lys tRNA}
865596	865671	+	76	15829254	ECs5397	-	^{10 Lys tRNA}
1056961	1057048	-	88	15829254	ECs5401	-	^{08 Ser tRNA}
1165731	1165783	-	53	15829254	ECs5402	-	DicF antisense RNA
1179418	1179493	+	76	15829254	ECs5403	-	^{14 Ile tRNA}
1179501	1179577	+	77	15829254	ECs5404	-	^{11 Arg tRNA}
1179591	1179667	+	77	15829254	ECs5405	-	^{11 Arg tRNA}
1210746	1210833	-	88	15829254	ECs5407	-	^{08 Ser tRNA}
1266623	1266698	+	76	15829254	ECs5408	-	^{14 Ile tRNA}
1266708	1266784	+	77	15829254	ECs5409	-	^{11 Arg tRNA}
1266798	1266874	+	77	15829254	ECs5410	-	^{11 Arg tRNA}
1456705	1456792	-	88	15829254	ECs5416	-	^{08 Ser tRNA}
1732289	1732373	-	85	15829254	ECs5424	-	^{18 Tyr tRNA}
1732583	1732667	-	85	15829254	ECs5425	-	^{18 Tyr tRNA}
1762085	1762135	-	51	15829254	ECs5427	-	DicF
1773942	1774017	+	76	15829254	ECs5429	-	^{14 Ile tRNA}
1774098	1774174	+	77	15829254	ECs5430	-	^{11 Arg tRNA}
1940568	1940643	+	76	15829254	ECs5434	-	^{14 Ile tRNA}
1940651	1940730	+	80	15829254	ECs5435	-	Xaa tRNA
1940744	1940820	+	77	15829254	ECs5436	-	^{11 Arg tRNA}
2189515	2189591	-	77	15829254	ECs5447	-	^{11 Arg tRNA}
2189605	2189684	-	80	15829254	ECs5448	-	Xaa tRNA
2189692	2189767	-	76	15829254	ECs5449	-	^{14 Ile tRNA}
2201444	2201496	+	53	15829254	ECs5450	-	DicF
2240486	2240562	-	77	15829254	ECs5453	-	^{11 Arg tRNA}
2240576	2240652	-	77	15829254	ECs5454	-	^{11 Arg tRNA}
2240660	2240735	-	76	15829254	ECs5455	-	^{14 Ile tRNA}
2250670	2250722	+	53	15829254	ECs5459	-	DicF antisense RNA
2346146	2346222	+	77	15829254	ECs5461	-	^{13 Val tRNA}
2346227	2346303	+	77	15829254	ECs5462	-	^{13 Val tRNA}
2614087	2614173	-	87	15829254	ECs5466	-	^{15 Leu tRNA}
2614186	2614259	-	74	15829254	ECs5467	-	^{19 Cys tRNA}
2614313	2614388	-	76	15829254	ECs5468	-	^{01 Gly tRNA}
2649773	2649859	-	87	15829254	ECs5469	-	anti-sense RNA silencer of rcsA gene
2697756	2697832	-	77	15829254	ECs5471	-	^{11 Arg tRNA}
2697846	2697922	-	77	15829254	ECs5472	-	^{11 Arg tRNA}
2697930	2698005	-	76	15829254	ECs5473	-	^{14 Ile tRNA}
2712036	2712125	-	90	15829254	ECs5474	-	^{08 Ser tRNA}
2713117	2713192	+	76	15829254	ECs5475	-	^{07 Asn tRNA}
2727498	2727573	-	76	15829254	ECs5476	-	^{07 Asn tRNA}
2729322	2729397	+	76	15829254	ECs5477	-	^{07 Asn tRNA}
2731730	2731805	+	76	15829254	ECs5478	-	^{07 Asn tRNA}
3021141	3021217	+	77	15829254	ECs5483	-	^{03 Pro tRNA}
3046071	3046163	+	93	15829254	ECs5485	-	MicF
3192908	3192982	+	75	15829254	ECs5488	-	^{11 Arg tRNA}
3244824	3244899	-	76	15829254	ECs5489	-	^{02 Ala tRNA}
3244939	3245014	-	76	15829254	ECs5490	-	^{02 Ala tRNA}
3249460	3249535	+	76	15829254	ECs5491	-	^{13 Val tRNA}
3249580	3249655	+	76	15829254	ECs5492	-	^{13 Val tRNA}
3249702	3249777	+	76	15829254	ECs5493	-	^{13 Val tRNA}
3249782	3249857	+	76	15829254	ECs5494	-	^{10 Lys tRNA}
3446266	3446385	-	120	15829254	ECs5499	-	5S ribosomal RNA
3446478	3449380	-	2903	15829254	ECs5500	-	23S ribosomal RNA
3449574	3449649	-	76	15829254	ECs5501	-	^{04 Glu tRNA}
3449735	3451276	-	1542	15829254	ECs5502	-	16S ribosomal RNA
3475507	3475962	+	456	15829254	ECs5503	-	tmRNA
3507947	3508022	-	76	15829254	ECs5504	-	^{14 Ile tRNA}
3541942	3542018	-	77	15829254	ECs5505	-	^{11 Arg tRNA}
3542121	3542197	-	77	15829254	ECs5506	-	^{11 Arg tRNA}
3542260	3542336	-	77	15829254	ECs5507	-	^{11 Arg tRNA}
3542401	3542477	-	77	15829254	ECs5508	-	^{11 Arg tRNA}
3542481	3542573	-	93	15829254	ECs5509	-	^{08 Ser tRNA}
3646556	3646924	-	369	15829254	ECs5510	-	CsrB
3665096	3665208	+	113	15829254	ECs5511	-	GcvB
3669787	3669863	+	77	15829254	ECs5512	-	^{16 Met tRNA}
3669897	3669973	+	77	15829254	ECs5513	-	^{16 Met tRNA}
3670007	3670083	+	77	15829254	ECs5514	-	^{16 Met tRNA}
3737314	3737387	-	74	15829254	ECs5515	-	^{01 Gly tRNA}
3793112	3793295	+	184	15829254	ECs5516	-	6S RNA
3851960	3852035	+	76	15829254	ECs5517	-	^{17 Phe tRNA}
3955129	3955204	+	76	15829254	ECs5519	-	^{14 Ile tRNA}
4009451	4009827	-	377	15829254	ECs5520	-	Rnase P RNA
4060711	4060787	-	77	15829254	ECs5521	-	^{16 Met tRNA}
4064570	4064656	-	87	15829254	ECs5522	-	^{15 Leu tRNA}
4158428	4158547	-	120	15829254	ECs5523	-	5S ribosomal RNA
4158585	4158660	-	76	15829254	ECs5524	-	^{12 Thr tRNA}
4158673	4158792	-	120	15829254	ECs5525	-	5S ribosomal RNA
4158885	4161787	-	2903	15829254	ECs5526	-	23S ribosomal RNA
4161971	4162046	-	76	15829254	ECs5527	-	^{02 Ala tRNA}
4162089	4162165	-	77	15829254	ECs5528	-	^{14 Ile tRNA}
4162234	4163775	-	1542	15829254	ECs5529	-	16S ribosomal RNA
4450439	4450515	-	77	15829254	ECs5535	-	^{03 Pro tRNA}
4580769	4580863	+	95	15829254	ECs5538	-	Sec tRNA
4735252	4736793	+	1542	15829254	ECs5543	-	16S ribosomal RNA
4736879	4736954	+	76	15829254	ECs5544	-	^{04 Glu tRNA}
4737148	4740052	+	2905	15829254	ECs5545	-	23S ribosomal RNA
4740145	4740264	+	120	15829254	ECs5546	-	5S ribosomal RNA
4740317	4740392	+	76	15829254	ECs5547	-	^{06 Asp tRNA}
4740401	4740476	+	76	15829254	ECs5548	-	^{20 Trp tRNA}
4775781	4775857	+	77	15829254	ECs5550	-	^{11 Arg tRNA}
4775916	4775991	+	76	15829254	ECs5551	-	^{09 His tRNA}
4776012	4776098	+	87	15829254	ECs5552	-	^{15 Leu tRNA}
4776142	4776215	+	74	15829254	ECs5553	-	Xaa tRNA
4776238	4776324	+	87	15829254	ECs5554	-	^{15 Leu tRNA}
4776367	4776442	+	76	15829254	ECs5555	-	^{03 Pro tRNA}
4831654	4833195	+	1542	15829254	ECs5557	-	16S ribosomal RNA
4833264	4833340	+	77	15829254	ECs5558	-	^{14 Ile tRNA}
4833383	4833458	+	76	15829254	ECs5559	-	^{02 Ala tRNA}
4833642	4836546	+	2905	15829254	ECs5560	-	23S ribosomal RNA
4836639	4836758	+	120	15829254	ECs5561	-	5S ribosomal RNA
4845852	4845960	+	109	15829254	ECs5563	-	Spot 42 RNA
4964922	4965031	-	110	15829254	ECs5566	-	OxyS RNA
4975927	4977468	+	1542	15829254	ECs5567	-	16S ribosomal RNA
4977554	4977629	+	76	15829254	ECs5568	-	^{04 Glu tRNA}
4977823	4980727	+	2905	15829254	ECs5569	-	23S ribosomal RNA
4980820	4980939	+	120	15829254	ECs5570	-	5S ribosomal RNA
4984405	4984480	+	76	15829254	ECs5571	-	^{12 Thr tRNA}
4984489	4984573	+	85	15829254	ECs5572	-	^{18 Tyr tRNA}
4984690	4984764	+	75	15829254	ECs5573	-	^{01 Gly tRNA}
4984771	4984846	+	76	15829254	ECs5574	-	^{12 Thr tRNA}
5016953	5018494	+	1542	15829254	ECs5576	-	16S ribosomal RNA
5018580	5018655	+	76	15829254	ECs5577	-	^{04 Glu tRNA}
5018849	5021753	+	2905	15829254	ECs5578	-	23S ribosomal RNA
5021846	5021965	+	120	15829254	ECs5579	-	5S ribosomal RNA
5217002	5217077	-	76	15829254	ECs5585	-	^{17 Phe tRNA}
5246085	5246160	+	76	15829254	ECs5587	-	^{01 Gly tRNA}
5246197	5246272	+	76	15829254	ECs5588	-	^{01 Gly tRNA}
5246308	5246383	+	76	15829254	ECs5589	-	^{01 Gly tRNA}
5346999	5347083	+	85	15829254	ECs5590	-	^{15 Leu tRNA}
5464439	5464525	-	87	15829254	ECs5594	-	^{15 Leu tRNA}