Материалы:NC 003143

Вы находитесь в Инкубаторе

Это исходный материал (как правило загружен ботом)

Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_003143            4653728 bp    DNA     circular BCT 26-JAN-2007
   DEFINITION  Yersinia pestis CO92, complete genome.
   ACCESSION   NC_003143
   VERSION     NC_003143.1  GI:16120353
   KEYWORDS    .
   SOURCE      Yersinia pestis CO92
     ORGANISM  Yersinia pestis CO92
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Yersinia.
   REFERENCE   1  (bases 1 to 4653728)
     AUTHORS   Delihas,N.
     TITLE     Annotation and evolutionary relationships of a small regulatory RNA
               gene micF and its target ompF in Yersinia species
     JOURNAL   (er) BMC Microbiol. 3, 13 (2003)
      PUBMED   12834539
   REFERENCE   2  (bases 1 to 4653728)
     AUTHORS   Parkhill,J., Wren,B.W., Thomson,N.R., Titball,R.W., Holden,M.T.G.,
               Prentice,M.B., Sebaihia,M., James,K.D., Churcher,C., Mungall,K.L.,
               Baker,S., Basham,D., Bentley,S.D., Brooks,K., Cerdeno-Tarraga,A.M.,
               Chillingworth,T., Cronin,A., Davies,R.M., Davis,P., Dougan,G.,
               Feltwell,T., Hamlin,N., Holroyd,S., Jagels,K., Leather,S.,
               Karlyshev,A.V., Moule,S., Oyston,P.C.F., Quail,M., Rutherford,K.,
               Simmonds,M., Skelton,J., Stevens,K., Whitehead,S. and Barrell,B.G.
     TITLE     Genome sequence of Yersinia pestis, the causative agent of plague
     JOURNAL   Nature 413 (6855), 523-527 (2001)
      PUBMED   11586360
   REFERENCE   3  (bases 1 to 4653728)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (15-OCT-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 4653728)
     AUTHORS   Parkhill,J.
     TITLE     Direct Submission
     JOURNAL   Submitted (04-OCT-2001) Submitted on behalf of the Yersinia
               sequencing team, Sanger Centre, Wellcome Trust Genome Campus,
               Hinxton, Cambridge CB10 1SA E-mail: parkhill@sanger.ac.uk
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AL590842.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
12292	13763	+	1472	16120353	YPOr01	-	16S ribosomal RNA
13944	14019	+	76	16120353	YPt_01	-	^{04 Glu tRNA}
14272	17178	+	2907	16120353	YPOr02	-	23S ribosomal RNA
17178	17411	+	234	16120353	YPOr03	-	5S ribosomal RNA
25879	25982	+	104	16120353	YPOs01	-
348756	348831	-	76	16120353	YPt_02	-	^{17 Phe tRNA}
379434	379509	+	76	16120353	YPt_03	-	^{01 Gly tRNA}
447362	447448	-	87	16120353	YPt_04	-	^{15 Leu tRNA}
698940	699016	-	77	16120353	YPt_05	-	^{16 Met tRNA}
971477	971550	-	74	16120353	YPt_06	-	^{01 Gly tRNA}
1001993	1002174	+	182	16120353	YPOs02	-
1063926	1064001	+	76	16120353	YPt_07	-	^{17 Phe tRNA}
1164810	1164886	-	77	16120353	YPt_08	-	^{16 Met tRNA}
1165010	1165086	-	77	16120353	YPt_09	-	^{16 Met tRNA}
1177074	1177355	+	282	16120353	YPOs03	-
1217505	1218993	+	1489	16120353	YPOr04	-	16S ribosomal RNA
1219157	1219232	+	76	16120353	YPt_10	-	^{04 Glu tRNA}
1219485	1222391	+	2907	16120353	YPOr05	-	23S ribosomal RNA
1222391	1222624	+	234	16120353	YPOr06	-	5S ribosomal RNA
1222742	1222818	+	77	16120353	YPt_11	-	^{06 Asp tRNA}
1230109	1230185	+	77	16120353	YPt_12	-	^{06 Asp tRNA}
1245588	1245951	+	364	16120353	YPOs04	-
1273048	1273123	+	76	16120353	YPt_13	-	^{10 Lys tRNA}
1273151	1273226	+	76	16120353	YPt_14	-	^{10 Lys tRNA}
1273255	1273324	+	70	16120353	YPt_15	-
1381758	1381899	-	142	16120353	YPOs05	-
1384371	1384458	+	88	16120353	YPt_16	-	^{08 Ser tRNA}
1384464	1384539	+	76	16120353	YPt_17	-	^{12 Thr tRNA}
1416574	1416650	-	77	16120353	YPt_18	-	^{03 Pro tRNA}
1639663	1639750	+	88	16120353	YPt_19	-	^{08 Ser tRNA}
1797571	1797646	-	76	16120353	YPt_20	-	^{07 Asn tRNA}
1976985	1977060	-	76	16120353	YPt_21	-	^{07 Asn tRNA}
2108507	2108582	+	76	16120353	YPt_22	-	^{10 Lys tRNA}
2115031	2115106	+	76	16120353	YPt_23	-	^{01 Gly tRNA}
2115159	2115232	+	74	16120353	YPt_24	-	^{19 Cys tRNA}
2115243	2115328	+	86	16120353	YPt_25	-	^{15 Leu tRNA}
2171287	2171362	-	76	16120353	YPt_26	-	^{07 Asn tRNA}
2298924	2299013	-	90	16120353	YPt_27	-	^{08 Ser tRNA}
2307334	2307423	-	90	16120353	YPt_28	-	^{08 Ser tRNA}
2440767	2440851	-	85	16120353	YPt_29	-	^{18 Tyr tRNA}
2688776	2688852	+	77	16120353	YPt_30	-	^{13 Val tRNA}
2688912	2688988	+	77	16120353	YPt_31	-	^{13 Val tRNA}
2946029	2946103	-	75	16120353	YPt_32	-	^{05 Gln tRNA}
2946109	2946185	-	77	16120353	YPt_33	-	^{16 Met tRNA}
2946218	2946292	-	75	16120353	YPt_34	-	^{05 Gln tRNA}
2946322	2946406	-	85	16120353	YPt_35	-	^{15 Leu tRNA}
2946414	2946490	-	77	16120353	YPt_36	-	^{16 Met tRNA}
3065197	3065271	+	75	16120353	YPt_37	-	^{11 Arg tRNA}
3151676	3151752	-	77	16120353	YPt_38	-	^{11 Arg tRNA}
3332619	3332694	-	76	16120353	YPt_39	-	^{10 Lys tRNA}
3332894	3332969	-	76	16120353	YPt_40	-	^{13 Val tRNA}
3333014	3333089	-	76	16120353	YPt_41	-	^{13 Val tRNA}
3333126	3333201	-	76	16120353	YPt_42	-	^{13 Val tRNA}
3335833	3335908	+	76	16120353	YPt_43	-	^{02 Ala tRNA}
3335986	3336061	+	76	16120353	YPt_44	-	^{02 Ala tRNA}
3498454	3498573	-	120	16120353	YPOs06	-
3648969	3649202	-	234	16120353	YPOr07	-	5S ribosomal RNA
3649202	3652108	-	2907	16120353	YPOr08	-	23S ribosomal RNA
3652327	3652402	-	76	16120353	YPt_45	-	^{02 Ala tRNA}
3652454	3652530	-	77	16120353	YPt_46	-	^{14 Ile tRNA}
3652660	3654148	-	1489	16120353	YPOr09	-	16S ribosomal RNA
3682605	3682681	-	77	16120353	YPt_47	-	^{11 Arg tRNA}
3682739	3682815	-	77	16120353	YPt_48	-	^{11 Arg tRNA}
3682824	3682916	-	93	16120353	YPt_49	-	^{08 Ser tRNA}
3843474	3843558	-	85	16120353	YPt_50	-	^{15 Leu tRNA}
3909002	3909078	-	77	16120353	YPt_51	-	^{16 Met tRNA}
3909139	3909225	-	87	16120353	YPt_52	-	^{15 Leu tRNA}
3955749	3956125	-	377	16120353	YPOs07	-
4175006	4175140	-	135	16120353	YPOr10	-	5S ribosomal RNA
4175170	4175245	-	76	16120353	YPt_53	-	^{12 Thr tRNA}
4175254	4175486	-	233	16120353	YPOr11	-	5S ribosomal RNA
4175486	4178392	-	2907	16120353	YPOr12	-	5S ribosomal RNA
4178611	4178686	-	76	16120353	YPt_54	-	^{02 Ala tRNA}
4178738	4178814	-	77	16120353	YPt_55	-	^{14 Ile tRNA}
4178944	4180432	-	1489	16120353	YPOr13	-	16S ribosomal RNA
4211082	4211157	-	76	16120353	YPt_56	-	^{12 Thr tRNA}
4211164	4211238	-	75	16120353	YPt_57	-	^{01 Gly tRNA}
4211388	4211472	-	85	16120353	YPt_58	-	^{18 Tyr tRNA}
4211491	4211566	-	76	16120353	YPt_59	-	^{12 Thr tRNA}
4218117	4218350	-	234	16120353	YPOr14	-	5S ribosomal RNA
4218350	4221256	-	2907	16120353	YPOr15	-	23S ribosomal RNA
4221475	4221550	-	76	16120353	YPt_60	-	^{02 Ala tRNA}
4221602	4221678	-	77	16120353	YPt_61	-	^{14 Ile tRNA}
4221808	4223296	-	1489	16120353	YPOr16	-	16S ribosomal RNA
4325247	4325323	-	77	16120353	YPt_62	-	^{03 Pro tRNA}
4325399	4325485	-	87	16120353	YPt_63	-	^{15 Leu tRNA}
4325502	4325577	-	76	16120353	YPt_64	-	^{09 His tRNA}
4325661	4325737	-	77	16120353	YPt_65	-	^{11 Arg tRNA}
4384336	4384411	-	76	16120353	YPt_66	-	^{20 Trp tRNA}
4384420	4384496	-	77	16120353	YPt_67	-	^{06 Asp tRNA}
4384614	4384847	-	234	16120353	YPOr17	-	5S ribosomal RNA
4384847	4387753	-	2907	16120353	YPOr18	-	23S ribosomal RNA
4388006	4388081	-	76	16120353	YPt_68	-	^{04 Glu tRNA}
4388245	4389733	-	1489	16120353	YPOr19	-	16S ribosomal RNA
4517686	4517762	-	77	16120353	YPt_69	-	^{03 Pro tRNA}
4547972	4548062	-	91	16120353	YPt_70	-	Sec tRNA