Геном прокариот/Материалы:NC 003888

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_003888            8667507 bp    DNA     linear   BCT 28-JUN-2007
   DEFINITION  Streptomyces coelicolor A3(2), complete genome.
   ACCESSION   NC_003888
   VERSION     NC_003888.3  GI:32141095
   KEYWORDS    complete genome.
   SOURCE      Streptomyces coelicolor A3(2)
     ORGANISM  Streptomyces coelicolor A3(2)
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Streptomycineae; Streptomycetaceae; Streptomyces.
   REFERENCE   1  (bases 1 to 8667507)
     AUTHORS   Heuts,D.P., van Hellemond,E.W., Janssen,D.B. and Fraaije,M.W.
     TITLE     Discovery, characterization and kinetic analysis of an alditol
               oxidase from streptomyces coelicolor
     JOURNAL   (er) J. Biol. Chem. (2007) In press
      PUBMED   17517896
   REFERENCE   2  (bases 1 to 8667507)
     AUTHORS   Bentley,S.D., Chater,K.F., Cerdeno-Tarraga,A.M., Challis,G.L.,
               Thomson,N.R., James,K.D., Harris,D.E., Quail,M.A., Kieser,H.,
               Harper,D., Bateman,A., Brown,S., Chandra,G., Chen,C.W., Collins,M.,
               Cronin,A., Fraser,A., Goble,A., Hidalgo,J., Hornsby,T., Howarth,S.,
               Huang,C.H., Kieser,T., Larke,L., Murphy,L., Oliver,K., O'Neil,S.,
               Rabbinowitsch,E., Rajandream,M.A., Rutherford,K., Rutter,S.,
               Seeger,K., Saunders,D., Sharp,S., Squares,R., Squares,S.,
               Taylor,K., Warren,T., Wietzorrek,A., Woodward,J., Barrell,B.G.,
               Parkhill,J. and Hopwood,D.A.
     TITLE     Complete genome sequence of the model actinomycete Streptomyces
               coelicolor A3(2)
     JOURNAL   Nature 417 (6885), 141-147 (2002)
      PUBMED   12000953
   REFERENCE   3  (bases 1 to 8667507)
     AUTHORS   Redenbach,M., Kieser,H.M., Denapaite,D., Eichner,A., Cullum,J.,
               Kinashi,H. and Hopwood,D.A.
     TITLE     A set of ordered cosmids and a detailed genetic and physical map
               for the 8 Mb Streptomyces coelicolor A3(2) chromosome
     JOURNAL   Mol. Microbiol. 21 (1), 77-96 (1996)
      PUBMED   8843436
   REFERENCE   4  (bases 1 to 8667507)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-MAY-2002) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   5  (bases 1 to 8667507)
     AUTHORS   Bentley,S.D.
     TITLE     Direct Submission
     JOURNAL   Submitted (09-MAY-2002) Sanger Institute, Wellcome Trust Genome
               Campus, Hinxton, Cambridge CB10 1SA, United Kingdom
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AL645882.
               On Jun 22, 2003 this sequence version replaced gi:31340543.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
1468591	1468710	-	120	32141095	SCOr01	-
1468795	1471916	-	3122	32141095	SCOr02	-
1472193	1473723	-	1531	32141095	SCOr03	-
1641943	1642017	-	75	32141095	SCOt01	-	^{13 Val tRNA}
1649559	1649633	-	75	32141095	SCOt02	-	^{13 Val tRNA}
1656352	1656424	+	73	32141095	SCOt03	-	^{01 Gly tRNA}
1656463	1656536	+	74	32141095	SCOt04	-	^{19 Cys tRNA}
1656538	1656609	+	72	32141095	SCOt05	-	^{13 Val tRNA}
1656646	1656717	+	72	32141095	SCOt06	-	^{13 Val tRNA}
1656743	1656814	+	72	32141095	SCOt07	-	^{13 Val tRNA}
1797166	1797253	+	88	32141095	SCOt08	-	^{15 Leu tRNA}
1916451	1916571	-	121	32141095	SCOr04	-
1916673	1919795	-	3123	32141095	SCOr05	-
1920072	1921599	-	1528	32141095	SCOr06	-
2155886	2155958	+	73	32141095	SCOt09	-	^{15 Leu tRNA}
2462887	2463312	-	426	32141095	SCOs01	-
2523200	2523274	-	75	32141095	SCOt10	-	^{13 Val tRNA}
2646860	2646933	-	74	32141095	SCOt11	-	^{16 Met tRNA}
2647132	2647204	-	73	32141095	SCOt12	-	^{07 Asn tRNA}
2647210	2647282	-	73	32141095	SCOt13	-	^{07 Asn tRNA}
2781922	2781994	-	73	32141095	SCOt14	-	^{02 Ala tRNA}
2782760	2782835	-	76	32141095	SCOt15	-	^{02 Ala tRNA}
2847576	2847652	-	77	32141095	SCOt16	-	^{03 Pro tRNA}
2847816	2847889	+	74	32141095	SCOt17	-	^{01 Gly tRNA}
2929681	2929756	+	76	32141095	SCOt18	-	^{11 Arg tRNA}
3049397	3049469	+	73	32141095	SCOt19	-	^{09 His tRNA}
3079125	3079198	-	74	32141095	SCOt20	-	^{10 Lys tRNA}
3091827	3091900	+	74	32141095	SCOt21	-	^{10 Lys tRNA}
3095139	3095215	+	77	32141095	SCOt22	-	^{10 Lys tRNA}
3155187	3155273	+	87	32141095	SCOt23	-	^{15 Leu tRNA}
3226540	3226936	-	397	32141095	SCOs02	-
3296634	3296750	-	117	32141095	SCOr07	-
3296833	3300011	-	3179	32141095	SCOr08	-
3300208	3301965	-	1758	32141095	SCOr09	-
3380890	3380976	-	87	32141095	SCOt24	-	^{15 Leu tRNA}
3422227	3422299	+	73	32141095	SCOt25	-	Xaa tRNA
3481839	3481912	-	74	32141095	SCOt26	-	^{02 Ala tRNA}
3602609	3602684	+	76	32141095	SCOt27	-	^{11 Arg tRNA}
3685404	3685522	-	119	32141095	SCOr10	-
3685606	3688729	-	3124	32141095	SCOr11	-
3689010	3690537	-	1528	32141095	SCOr12	-
3908335	3908411	-	77	32141095	SCOt28	-	^{12 Thr tRNA}
3963111	3963184	+	74	32141095	SCOt29	-	^{03 Pro tRNA}
4062164	4062237	+	74	32141095	SCOt30	-	^{01 Gly tRNA}
4226761	4226847	-	87	32141095	SCOt31	-	^{15 Leu tRNA}
4243682	4243757	-	76	32141095	SCOt32	-	^{02 Ala tRNA}
4259791	4259867	-	77	32141095	SCOt33	-	^{14 Ile tRNA}
4382684	4382768	+	85	32141095	SCOt34	-	^{08 Ser tRNA}
4407512	4407602	+	91	32141095	SCOt35	-	^{08 Ser tRNA}
4407794	4407866	+	73	32141095	SCOt36	-	^{11 Arg tRNA}
4433546	4433630	-	85	32141095	SCOt37	-	^{08 Ser tRNA}
4456865	4456952	-	88	32141095	SCOt38	-	^{08 Ser tRNA}
4457032	4457113	+	82	32141095	SCOs03	-
4465950	4466025	-	76	32141095	SCOt39	-	^{01 Gly tRNA}
4469882	4469954	-	73	32141095	SCOt40	-	^{01 Gly tRNA}
4486471	4486545	-	75	32141095	SCOt41	-	^{06 Asp tRNA}
4490732	4490805	-	74	32141095	SCOt42	-	^{17 Phe tRNA}
4490830	4490904	-	75	32141095	SCOt43	-	^{06 Asp tRNA}
4490939	4491011	-	73	32141095	SCOt44	-	^{04 Glu tRNA}
4498149	4498221	+	73	32141095	SCOt45	-	^{10 Lys tRNA}
4505460	4505533	+	74	32141095	SCOt46	-	^{16 Met tRNA}
4530650	4532177	+	1528	32141095	SCOr13	-
4532454	4535576	+	3123	32141095	SCOr14	-
4535678	4535798	+	121	32141095	SCOr15	-
4646531	4646607	+	77	32141095	SCOt47	-	^{12 Thr tRNA}
5038512	5038593	+	82	32141095	SCOt48	-	^{18 Tyr tRNA}
5061316	5061388	+	73	32141095	SCOt49	-	^{12 Thr tRNA}
5061435	5061507	+	73	32141095	SCOt50	-	^{16 Met tRNA}
5071215	5071290	+	76	32141095	SCOt51	-	^{20 Trp tRNA}
5664562	5664635	+	74	32141095	SCOt52	-	^{16 Met tRNA}
5666820	5666893	-	74	32141095	SCOt53	-	^{16 Met tRNA}
5797608	5797677	-	70	32141095	SCOt54	-
5818721	5818795	-	75	32141095	SCOt55	-	^{11 Arg tRNA}
6049148	6049219	+	72	32141095	SCOt56	-	^{05 Gln tRNA}
6049259	6049331	+	73	32141095	SCOt57	-	^{04 Glu tRNA}
6049394	6049469	+	76	32141095	SCOt58	-	^{04 Glu tRNA}
6049487	6049558	+	72	32141095	SCOt59	-	^{05 Gln tRNA}
6049603	6049675	+	73	32141095	SCOt60	-	^{04 Glu tRNA}
6269992	6271519	+	1528	32141095	SCOr16	-
6271800	6274919	+	3120	32141095	SCOr17	-
6275003	6275121	+	119	32141095	SCOr18	-
6275983	6276058	+	76	32141095	SCOt61	-	^{12 Thr tRNA}
7300604	7300688	+	85	32141095	SCOt62	-	^{15 Leu tRNA}
7565958	7566031	+	74	32141095	SCOt63	-	^{03 Pro tRNA}
7740493	7740566	+	74	32141095	SCOt64	-	^{03 Pro tRNA}
7759229	7759302	+	74	32141095	SCOt65	-	^{03 Pro tRNA}