Материалы:NC 003910

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_003910            5373180 bp    DNA     circular BCT 17-JAN-2006
   DEFINITION  Colwellia psychrerythraea 34H, complete genome.
   ACCESSION   NC_003910
   VERSION     NC_003910.7  GI:71277742
   KEYWORDS    .
   SOURCE      Colwellia psychrerythraea 34H
     ORGANISM  Colwellia psychrerythraea 34H
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Colwelliaceae; Colwellia.
   REFERENCE   1  (bases 1 to 5373180)
     AUTHORS   Methe,B.A., Nelson,K.E., Deming,J.W., Momen,B., Melamud,E.,
               Zhang,X., Moult,J., Madupu,R., Nelson,W.C., Dodson,R.J.,
               Brinkac,L.M., Daugherty,S.C., Durkin,A.S., Deboy,R.T.,
               Kolonay,J.F., Sullivan,S.A., Zhou,L., Davidsen,T.M., Wu,M.,
               Huston,A.L., Lewis,M., Weaver,B., Weidman,J.F., Khouri,H.,
               Utterback,T.R., Feldblyum,T.V. and Fraser,C.M.
     TITLE     The psychrophilic lifestyle as revealed by the genome sequence of
               Colwellia psychrerythraea 34H through genomic and proteomic
               analyses
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 102 (31), 10913-10918 (2005)
      PUBMED   16043709
   REFERENCE   2  (bases 1 to 5373180)
     AUTHORS   Methe,B.A., Nelson,K.E., Deming,J.W., Momen,B., Melamud,E.,
               Zhang,X., Moult,J., Madupu,R., Nelson,W.C., Dodson,R.J.,
               Brinkac,L.M., Daugherty,S.C., Durkin,A.S., DeBoy,R.T.,
               Kolonay,J.F., Sullivan,S.A., Zhou,L., Davidsen,T.M., Wu,M.,
               Huston,A.L., Lewis,M.R., Weaver,B., Weidman,J.F., Khouri,H.M.,
               Utterback,T.R., Feldblyum,T.V. and Fraser,C.M.
     TITLE     Direct Submission
     JOURNAL   Submitted (07-JUL-2005) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   REFERENCE   3  (bases 1 to 5373180)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-JUN-2002) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000083.
               On Jul 27, 2005 this sequence version replaced gi:34538813.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
34936	36449	+	1514	71277742	CPS_0034	-	16S ribosomal RNA
36547	36623	+	77	71277742	CPS_0035	-	^{14 Ile tRNA}
37077	39970	+	2894	71277742	CPS_0037	-	23S ribosomal RNA
40130	40248	+	119	71277742	CPS_0038	-	5S ribosomal RNA
40354	40470	+	117	71277742	CPS_0039	-	5S ribosomal RNA
40608	40692	+	85	71277742	CPS_0040	-	^{18 Tyr tRNA}
44357	45868	+	1512	71277742	CPS_0043	-	16S ribosomal RNA
45969	46044	+	76	71277742	CPS_0044	-	^{02 Ala tRNA}
46481	49374	+	2894	71277742	CPS_0046	-	23S ribosomal RNA
49542	49660	+	119	71277742	CPS_0048	-	5S ribosomal RNA
50199	51712	+	1514	71277742	CPS_0049	-	16S ribosomal RNA
51813	51888	+	76	71277742	CPS_0050	-	^{02 Ala tRNA}
52325	55218	+	2894	71277742	CPS_0052	-	23S ribosomal RNA
55386	55504	+	119	71277742	CPS_0054	-	5S ribosomal RNA
350954	352465	+	1512	71277742	CPS_0339	-	16S ribosomal RNA
352566	352641	+	76	71277742	CPS_0340	-	^{02 Ala tRNA}
353078	355971	+	2894	71277742	CPS_0342	-	23S ribosomal RNA
356139	356257	+	119	71277742	CPS_0344	-	5S ribosomal RNA
356803	358316	+	1514	71277742	CPS_0345	-	16S ribosomal RNA
358417	358492	+	76	71277742	CPS_0346	-	^{02 Ala tRNA}
358929	361822	+	2894	71277742	CPS_0348	-	23S ribosomal RNA
361990	362108	+	119	71277742	CPS_0350	-	5S ribosomal RNA
554664	556175	+	1512	71277742	CPS_0556	-	16S ribosomal RNA
556276	556351	+	76	71277742	CPS_0557	-	^{02 Ala tRNA}
556788	559681	+	2894	71277742	CPS_0559	-	23S ribosomal RNA
559849	559967	+	119	71277742	CPS_0561	-	5S ribosomal RNA
560506	562019	+	1514	71277742	CPS_0562	-	16S ribosomal RNA
562120	562195	+	76	71277742	CPS_0563	-	^{02 Ala tRNA}
562629	565522	+	2894	71277742	CPS_0565	-	23S ribosomal RNA
565682	565800	+	119	71277742	CPS_0567	-	5S ribosomal RNA
752180	752264	+	85	71277742	CPS_0748	-	^{15 Leu tRNA}
1072433	1072524	+	92	71277742	CPS_1044	-	^{08 Ser tRNA}
1072605	1072681	+	77	71277742	CPS_1045	-	^{11 Arg tRNA}
1072747	1072823	+	77	71277742	CPS_1046	-	^{11 Arg tRNA}
1072968	1073044	+	77	71277742	CPS_1047	-	^{11 Arg tRNA}
1139287	1139363	-	77	71277742	CPS_1116	-	^{20 Trp tRNA}
1656456	1657967	+	1512	71277742	CPS_1609	-	16S ribosomal RNA
1658065	1658141	+	77	71277742	CPS_1610	-	^{14 Ile tRNA}
1658608	1661501	+	2894	71277742	CPS_1611	-	23S ribosomal RNA
1661653	1661771	+	119	71277742	CPS_1612	-	5S ribosomal RNA
1782999	1783074	+	76	71277742	CPS_1734	-	^{10 Lys tRNA}
1783184	1783259	+	76	71277742	CPS_1735	-	^{10 Lys tRNA}
1783296	1783371	+	76	71277742	CPS_1736	-	^{10 Lys tRNA}
1783465	1783540	+	76	71277742	CPS_1737	-	^{10 Lys tRNA}
1783574	1783649	+	76	71277742	CPS_1738	-	^{10 Lys tRNA}
1783817	1783892	+	76	71277742	CPS_1739	-	^{10 Lys tRNA}
1785624	1785713	+	90	71277742	CPS_1742	-	^{08 Ser tRNA}
2356076	2356152	+	77	71277742	CPS_2258	-	^{06 Asp tRNA}
2356220	2356296	+	77	71277742	CPS_2259	-	^{06 Asp tRNA}
2356364	2356440	+	77	71277742	CPS_2260	-	^{06 Asp tRNA}
2356508	2356584	+	77	71277742	CPS_2261	-	^{06 Asp tRNA}
2356703	2356779	+	77	71277742	CPS_2262	-	^{06 Asp tRNA}
2447928	2448018	+	91	71277742	CPS_2352	-	^{08 Ser tRNA}
2448124	2448214	+	91	71277742	CPS_2353	-	^{08 Ser tRNA}
2711988	2712064	-	77	71277742	CPS_2609	-	^{03 Pro tRNA}
2822174	2822264	-	91	71277742	CPS_2705	-	^{08 Ser tRNA}
2962855	2962930	-	76	71277742	CPS_2828	-	^{04 Glu tRNA}
2963143	2963218	-	76	71277742	CPS_2829	-	^{04 Glu tRNA}
2963310	2963385	-	76	71277742	CPS_2830	-	^{04 Glu tRNA}
2963476	2963551	-	76	71277742	CPS_2831	-	^{04 Glu tRNA}
2963642	2963717	-	76	71277742	CPS_2832	-	^{04 Glu tRNA}
2963930	2964005	-	76	71277742	CPS_2833	-	^{04 Glu tRNA}
2964109	2964184	-	76	71277742	CPS_2834	-	^{02 Ala tRNA}
3024992	3025067	+	76	71277742	CPS_2889	-	^{07 Asn tRNA}
3025108	3025183	+	76	71277742	CPS_2890	-	^{07 Asn tRNA}
3025224	3025299	+	76	71277742	CPS_2891	-	^{07 Asn tRNA}
3025340	3025415	+	76	71277742	CPS_2892	-	^{07 Asn tRNA}
3050462	3050538	+	77	71277742	CPS_2916	-	^{13 Val tRNA}
3350912	3350987	-	76	71277742	CPS_3218	-	^{13 Val tRNA}
3351019	3351094	-	76	71277742	CPS_3219	-	^{13 Val tRNA}
3351202	3351277	-	76	71277742	CPS_3220	-	^{13 Val tRNA}
3351385	3351460	-	76	71277742	CPS_3221	-	^{13 Val tRNA}
3351569	3351644	-	76	71277742	CPS_3222	-	^{13 Val tRNA}
3351749	3351824	-	76	71277742	CPS_3223	-	^{13 Val tRNA}
3397668	3397752	-	85	71277742	CPS_3261	-	^{15 Leu tRNA}
3397886	3397961	-	76	71277742	CPS_3262	-	^{01 Gly tRNA}
3398001	3398085	-	85	71277742	CPS_3263	-	^{15 Leu tRNA}
3398159	3398234	-	76	71277742	CPS_3264	-	^{01 Gly tRNA}
3398304	3398379	-	76	71277742	CPS_3265	-	^{01 Gly tRNA}
3398423	3398507	-	85	71277742	CPS_3266	-	^{15 Leu tRNA}
3398514	3398587	-	74	71277742	CPS_3267	-	^{19 Cys tRNA}
3398652	3398727	-	76	71277742	CPS_3268	-	^{01 Gly tRNA}
3411131	3411207	+	77	71277742	CPS_3280	-	^{16 Met tRNA}
3411266	3411342	+	77	71277742	CPS_3281	-	^{16 Met tRNA}
3411653	3411729	+	77	71277742	CPS_3282	-	^{16 Met tRNA}
3411841	3411917	+	77	71277742	CPS_3283	-	^{16 Met tRNA}
3412027	3412103	+	77	71277742	CPS_3284	-	^{16 Met tRNA}
3412238	3412314	+	77	71277742	CPS_3285	-	^{16 Met tRNA}
3582462	3582546	-	85	71277742	CPS_3446	-	^{15 Leu tRNA}
3699650	3699726	+	77	71277742	CPS_3562	-	^{16 Met tRNA}
3699902	3699986	+	85	71277742	CPS_3563	-	^{15 Leu tRNA}
3700029	3700103	+	75	71277742	CPS_3564	-	^{05 Gln tRNA}
3700167	3700241	+	75	71277742	CPS_3565	-	^{05 Gln tRNA}
3700294	3700378	+	85	71277742	CPS_3566	-	^{15 Leu tRNA}
3700464	3700540	+	77	71277742	CPS_3567	-	^{16 Met tRNA}
3953099	3953175	-	77	71277742	CPS_3787	-	^{03 Pro tRNA}
3953225	3953300	-	76	71277742	CPS_3788	-	^{09 His tRNA}
3953332	3953408	-	77	71277742	CPS_3789	-	^{11 Arg tRNA}
3953453	3953529	-	77	71277742	CPS_3790	-	^{03 Pro tRNA}
3996724	3997073	+	350	71277742	CPS_3830	-	sRNA
4074731	4074849	-	119	71277742	CPS_3902	-	5S ribosomal RNA
4075015	4077908	-	2894	71277742	CPS_3904	-	23S ribosomal RNA
4078362	4078437	-	76	71277742	CPS_3906	-	^{02 Ala tRNA}
4078538	4080049	-	1512	71277742	CPS_3907	-	16S ribosomal RNA
4355498	4355573	-	76	71277742	CPS_4139	-	^{17 Phe tRNA}
4364104	4364179	+	76	71277742	CPS_4150	-	^{17 Phe tRNA}
4364281	4364356	+	76	71277742	CPS_4151	-	^{12 Thr tRNA}
4565728	4565804	-	77	71277742	CPS_4332	-	^{16 Met tRNA}
4912381	4912456	+	76	71277742	CPS_4649	-	^{09 His tRNA}
4912504	4912580	+	77	71277742	CPS_4650	-	^{03 Pro tRNA}
4913971	4914047	+	77	71277742	CPS_4652	-	^{03 Pro tRNA}
5064084	5064160	-	77	71277742	CPS_4779	-	^{20 Trp tRNA}
5065893	5065968	-	76	71277742	CPS_4781	-	^{12 Thr tRNA}
5065985	5066058	-	74	71277742	CPS_4782	-	^{01 Gly tRNA}
5066120	5066204	-	85	71277742	CPS_4783	-	^{18 Tyr tRNA}
5066265	5066340	-	76	71277742	CPS_4784	-	^{12 Thr tRNA}
5356461	5356537	-	77	71277742	CPS_5037	-	^{11 Arg tRNA}