Геном прокариот/Материалы:NC 004070

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_004070            1900521 bp    DNA     circular BCT 17-JAN-2006
   DEFINITION  Streptococcus pyogenes MGAS315, complete genome.
   ACCESSION   NC_004070
   VERSION     NC_004070.1  GI:21909536
   KEYWORDS    .
   SOURCE      Streptococcus pyogenes MGAS315
     ORGANISM  Streptococcus pyogenes MGAS315
               Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
               Streptococcus.
   REFERENCE   1  (bases 1 to 1900521)
     AUTHORS   Beres,S.B., Sylva,G.L., Barbian,K.D., Lei,B., Hoff,J.S.,
               Mammarella,N.D., Liu,M.-Y., Smoot,J.C., Porcella,S.F.,
               Parkins,L.D., McCormick,J.K., Leung,D.Y.M., Schlievert,P.M. and
               Musser,J.M.
     TITLE     Genome sequence of a serotype M3 strain of group A Streptococcus:
               phage-encoded toxins, the high-virulence phenotype, and clone
               emergence
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (15), 10078-10083 (2002)
      PUBMED   12122206
   REFERENCE   2  (bases 1 to 1900521)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (19-JUL-2002) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1900521)
     AUTHORS   Beres,S.B., Sylva,G.L., Barbian,K.D., Lei,B., Hoff,J.S.,
               Mammarella,N.D., Liu,M.-Y., Smoot,J.C., Porcella,S.F.,
               Parkins,L.D., McCormick,J.K., Leung,D.Y.M., Schlievert,P.M. and
               Musser,J.M.
     TITLE     Direct Submission
     JOURNAL   Submitted (14-JUN-2002) Laboratory of Human-Bacterial Pathogenesis,
               Rocky Mountain Laboratories, NIAID, NIH, 903 South Fourth St.,
               Hamilton, MT 59840, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE014074.
               regions of prohages are represented by misc_features. Complete
               genome of 6 S.pygenes prophages can be found  as separate proviral
               genome records:  749108..788645 NC_004584 - Streptococcus pyogenes
               phage 315.1  977267..1018338 NC_004585 - Streptococcus pyogenes
               phage 315.2  c1137554..1171972 NC_004586 - Streptococcus pyogenes
               phage 315.3  c1230115..1271910 NC_004587 - Streptococcus pyogenes
               phage 315.4  c1313194..1351399 NC_004588 - Streptococcus pyogenes
               phage 315.5  c1410542..1450555 NC_004589 - Streptococcus pyogenes
               phage 315.6.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
17066	18620	+	1555	21909536	SpyM3_r01	-	16S ribosomal RNA
18665	18740	+	76	21909536	SpyM3_t01	-	^{02 Ala tRNA}
19036	21941	+	2906	21909536	SpyM3_r02	-	23S ribosomal RNA
22023	22140	+	118	21909536	SpyM3_r13	-	5S ribosomal RNA
22158	22230	+	73	21909536	SpyM3_t02	-	^{13 Val tRNA}
22248	22320	+	73	21909536	SpyM3_t03	-	^{06 Asp tRNA}
22352	22424	+	73	21909536	SpyM3_t04	-	^{10 Lys tRNA}
22430	22511	+	82	21909536	SpyM3_t05	-	^{15 Leu tRNA}
22522	22594	+	73	21909536	SpyM3_t06	-	^{12 Thr tRNA}
22607	22678	+	72	21909536	SpyM3_t07	-	^{01 Gly tRNA}
22687	22771	+	85	21909536	SpyM3_t08	-	^{15 Leu tRNA}
22788	22864	+	77	21909536	SpyM3_t09	-	^{11 Arg tRNA}
22868	22941	+	74	21909536	SpyM3_t10	-	^{03 Pro tRNA}
23068	24622	+	1555	21909536	SpyM3_r03	-	16S ribosomal RNA
24667	24742	+	76	21909536	SpyM3_t11	-	^{02 Ala tRNA}
25038	27943	+	2906	21909536	SpyM3_r04	-	23S ribosomal RNA
28025	28142	+	118	21909536	SpyM3_r14	-	5S ribosomal RNA
28160	28232	+	73	21909536	SpyM3_t12	-	^{13 Val tRNA}
28250	28322	+	73	21909536	SpyM3_t13	-	^{06 Asp tRNA}
28354	28426	+	73	21909536	SpyM3_t14	-	^{10 Lys tRNA}
28432	28513	+	82	21909536	SpyM3_t15	-	^{15 Leu tRNA}
28524	28596	+	73	21909536	SpyM3_t16	-	^{12 Thr tRNA}
28609	28680	+	72	21909536	SpyM3_t17	-	^{01 Gly tRNA}
28689	28773	+	85	21909536	SpyM3_t18	-	^{15 Leu tRNA}
28790	28866	+	77	21909536	SpyM3_t19	-	^{11 Arg tRNA}
28870	28943	+	74	21909536	SpyM3_t20	-	^{03 Pro tRNA}
28949	29022	+	74	21909536	SpyM3_t21	-	^{16 Met tRNA}
29043	29116	+	74	21909536	SpyM3_t22	-	^{16 Met tRNA}
29139	29228	+	90	21909536	SpyM3_t23	-	^{08 Ser tRNA}
29238	29311	+	74	21909536	SpyM3_t24	-	^{16 Met tRNA}
29332	29404	+	73	21909536	SpyM3_t25	-	^{17 Phe tRNA}
29417	29487	+	71	21909536	SpyM3_t26	-	^{01 Gly tRNA}
29522	29595	+	74	21909536	SpyM3_t27	-	^{14 Ile tRNA}
29605	29692	+	88	21909536	SpyM3_t28	-	^{08 Ser tRNA}
80046	81600	+	1555	21909536	SpyM3_r05	-	16S ribosomal RNA
81645	81720	+	76	21909536	SpyM3_t29	-	^{02 Ala tRNA}
82016	84920	+	2905	21909536	SpyM3_r06	-	23S ribosomal RNA
85002	85119	+	118	21909536	SpyM3_r15	-	5S ribosomal RNA
85137	85209	+	73	21909536	SpyM3_t30	-	^{13 Val tRNA}
85215	85285	+	71	21909536	SpyM3_t31	-	^{01 Gly tRNA}
85320	85393	+	74	21909536	SpyM3_t32	-	^{14 Ile tRNA}
85416	85487	+	72	21909536	SpyM3_t33	-	^{04 Glu tRNA}
85498	85587	+	90	21909536	SpyM3_t34	-	^{08 Ser tRNA}
85597	85670	+	74	21909536	SpyM3_t35	-	^{16 Met tRNA}
85691	85763	+	73	21909536	SpyM3_t36	-	^{17 Phe tRNA}
85783	85863	+	81	21909536	SpyM3_t37	-	^{18 Tyr tRNA}
85870	85940	+	71	21909536	SpyM3_t38	-	^{20 Trp tRNA}
85952	86024	+	73	21909536	SpyM3_t39	-	^{09 His tRNA}
86033	86104	+	72	21909536	SpyM3_t40	-	^{05 Gln tRNA}
86124	86207	+	84	21909536	SpyM3_t41	-	^{15 Leu tRNA}
256188	257742	+	1555	21909536	SpyM3_r07	-	16S ribosomal RNA
257787	257862	+	76	21909536	SpyM3_t42	-	^{02 Ala tRNA}
258158	261063	+	2906	21909536	SpyM3_r08	-	23S ribosomal RNA
261145	261262	+	118	21909536	SpyM3_r16	-	5S ribosomal RNA
261268	261341	+	74	21909536	SpyM3_t43	-	^{07 Asn tRNA}
261421	261494	+	74	21909536	SpyM3_t44	-	^{11 Arg tRNA}
521499	521570	+	72	21909536	SpyM3_t45	-	^{11 Arg tRNA}
689643	689723	+	81	21909536	SpyM3_t46	-	^{18 Tyr tRNA}
689796	689870	+	75	21909536	SpyM3_t47	-	^{05 Gln tRNA}
691312	691383	+	72	21909536	SpyM3_t48	-	^{11 Arg tRNA}
976938	977282	+	345	21909536	SpyM3_s01	-	tmRNA
1283233	1283303	+	71	21909536	SpyM3_t49	-	^{12 Thr tRNA}
1353919	1353990	-	72	21909536	SpyM3_t50	-	^{04 Glu tRNA}
1354013	1354086	-	74	21909536	SpyM3_t51	-	^{14 Ile tRNA}
1354122	1354194	-	73	21909536	SpyM3_t52	-	^{12 Thr tRNA}
1354205	1354286	-	82	21909536	SpyM3_t53	-	^{15 Leu tRNA}
1354292	1354364	-	73	21909536	SpyM3_t54	-	^{10 Lys tRNA}
1354396	1354468	-	73	21909536	SpyM3_t55	-	^{06 Asp tRNA}
1354486	1354558	-	73	21909536	SpyM3_t56	-	^{13 Val tRNA}
1354576	1354693	-	118	21909536	SpyM3_r17	-	5S ribosomal RNA
1354775	1357680	-	2906	21909536	SpyM3_r09	-	23S ribosomal RNA
1357976	1358051	-	76	21909536	SpyM3_t57	-	^{02 Ala tRNA}
1358096	1359650	-	1555	21909536	SpyM3_r10	-	16S ribosomal RNA
1493756	1493842	-	87	21909536	SpyM3_t58	-	^{08 Ser tRNA}
1631764	1631849	-	86	21909536	SpyM3_t59	-	^{15 Leu tRNA}
1641465	1641538	-	74	21909536	SpyM3_t60	-	^{11 Arg tRNA}
1641618	1641691	-	74	21909536	SpyM3_t61	-	^{07 Asn tRNA}
1641697	1641814	-	118	21909536	SpyM3_r18	-	5S ribosomal RNA
1641896	1644801	-	2906	21909536	SpyM3_r11	-	23S ribosomal RNA
1645097	1645172	-	76	21909536	SpyM3_t62	-	^{02 Ala tRNA}
1645217	1646771	-	1555	21909536	SpyM3_r12	-	16S ribosomal RNA
1731541	1731613	+	73	21909536	SpyM3_t63	-	^{10 Lys tRNA}
1791364	1791434	-	71	21909536	SpyM3_t64	-	^{19 Cys tRNA}
1895993	1896066	-	74	21909536	SpyM3_t65	-	^{07 Asn tRNA}
1896100	1896171	+	72	21909536	SpyM3_t66	-	^{04 Glu tRNA}
1897512	1897585	+	74	21909536	SpyM3_t67	-	^{11 Arg tRNA}