Материалы:NC 004088

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_004088            4600755 bp    DNA     circular BCT 26-JAN-2006
   DEFINITION  Yersinia pestis KIM, complete genome.
   ACCESSION   NC_004088
   VERSION     NC_004088.1  GI:22123922
   KEYWORDS    .
   SOURCE      Yersinia pestis KIM
     ORGANISM  Yersinia pestis KIM
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Yersinia.
   REFERENCE   1  (bases 1 to 4600755)
     AUTHORS   Deng,W., Burland,V., Plunkett,G. III, Boutin,A., Mayhew,G.F.,
               Liss,P., Perna,N.T., Rose,D.J., Mau,B., Zhou,S., Schwartz,D.C.,
               Fetherston,J.D., Lindler,L.E., Brubaker,R.R., Plana,G.V.,
               Straley,S.C., McDonough,K.A., Nilles,M.L., Matson,J.S.,
               Blattner,F.R. and Perry,R.D.
     TITLE     Genome Sequence of Yersinia pestis KIM
     JOURNAL   J. Bacteriol. 184 (16), 4601-4611 (2002)
      PUBMED   12142430
   REFERENCE   2  (bases 1 to 4600755)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4600755)
     AUTHORS   Deng,W., Burland,V., Plunkett,G. III, Boutin,A., Mayhew,G.F.,
               Liss,P., Perna,N.T., Rose,D.J., Mau,B., Zhou,S., Schwartz,D.C.,
               Fetherston,J.D., Lindler,L.E., Brubaker,R.R., Plana,G.V.,
               Straley,S.C., McDonough,K.A., Nilles,M.L., Matson,J.S.,
               Blattner,F.R. and Perry,R.D.
     TITLE     Direct Submission
     JOURNAL   Submitted (21-FEB-2002) Genetics, University of Wisconsin, 445
               Henry Mall, Madison, WI 53706, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE009952.
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
12016	13600	+	1585	22123922	yr001	-	16S ribosomal RNA
13694	13766	+	73	22123922	yt001	-	^{04 Glu tRNA}
14022	16928	+	2907	22123922	yr002	-	23S ribosomal RNA
17036	17155	+	120	22123922	yr003	-	5S ribosomal RNA
17169	17241	+	73	22123922	yt002	-	^{12 Thr tRNA}
17285	17399	+	115	22123922	yr004	-	5S ribosomal RNA
125522	125898	-	377	22123922	ys001	-	RNase P, RNA component
355930	357514	+	1585	22123922	yr005	-	16S ribosomal RNA
357608	357680	+	73	22123922	yt003	-	^{04 Glu tRNA}
357936	360842	+	2907	22123922	yr006	-	23S ribosomal RNA
360950	361069	+	120	22123922	yr007	-	5S ribosomal RNA
361193	361272	+	80	22123922	yt004	-	^{06 Asp tRNA}
361278	361350	+	73	22123922	yt005	-	^{20 Trp tRNA}
419952	420025	+	74	22123922	yt006	-	^{11 Arg tRNA}
420112	420184	+	73	22123922	yt007	-	^{09 His tRNA}
420204	420287	+	84	22123922	yt008	-	^{15 Leu tRNA}
420366	420439	+	74	22123922	yt009	-	^{03 Pro tRNA}
522393	523977	+	1585	22123922	yr008	-	16S ribosomal RNA
524037	524110	+	74	22123922	yt010	-	^{14 Ile tRNA}
524165	524237	+	73	22123922	yt011	-	^{02 Ala tRNA}
524459	527365	+	2907	22123922	yr009	-	23S ribosomal RNA
527473	527592	+	120	22123922	yr010	-	5S ribosomal RNA
534149	534221	+	73	22123922	yt012	-	^{12 Thr tRNA}
534243	534324	+	82	22123922	yt013	-	^{18 Tyr tRNA}
534477	534548	+	72	22123922	yt014	-	^{01 Gly tRNA}
534558	534630	+	73	22123922	yt015	-	^{12 Thr tRNA}
565257	566841	+	1585	22123922	yr011	-	16S ribosomal RNA
566935	567007	+	73	22123922	yt016	-	^{04 Glu tRNA}
567263	570169	+	2907	22123922	yr012	-	23S ribosomal RNA
570277	570396	+	120	22123922	yr013	-	5S ribosomal RNA
674907	674979	-	73	22123922	yt017	-	^{17 Phe tRNA}
704627	704699	+	73	22123922	yt018	-	^{01 Gly tRNA}
704794	704866	+	73	22123922	yt019	-	^{01 Gly tRNA}
769517	769600	+	84	22123922	yt020	-	^{15 Leu tRNA}
769664	769737	+	74	22123922	yt021	-	^{16 Met tRNA}
834911	834992	+	82	22123922	yt022	-	^{15 Leu tRNA}
995663	995752	+	90	22123922	yt023	-	^{08 Ser tRNA}
995764	995837	+	74	22123922	yt024	-	^{11 Arg tRNA}
995898	995971	+	74	22123922	yt025	-	^{11 Arg tRNA}
996054	996127	+	74	22123922	yt026	-	^{11 Arg tRNA}
1024389	1025973	+	1585	22123922	yr014	-	16S ribosomal RNA
1026033	1026106	+	74	22123922	yt027	-	^{14 Ile tRNA}
1026161	1026233	+	73	22123922	yt028	-	^{02 Ala tRNA}
1026455	1029361	+	2907	22123922	yr015	-	23S ribosomal RNA
1029469	1029588	+	120	22123922	yr016	-	5S ribosomal RNA
1179164	1179277	+	114	22123922	yr017	-	4.5S RNA
1249406	1249479	+	74	22123922	yt029	-	^{11 Arg tRNA}
1342164	1342235	-	72	22123922	yt030	-	^{05 Gln tRNA}
1342244	1342317	-	74	22123922	yt031	-	^{16 Met tRNA}
1342353	1342424	-	72	22123922	yt032	-	^{05 Gln tRNA}
1342511	1342582	-	72	22123922	yt033	-	^{05 Gln tRNA}
1342615	1342696	-	82	22123922	yt034	-	^{15 Leu tRNA}
1342707	1342780	-	74	22123922	yt035	-	^{16 Met tRNA}
1658581	1658659	-	79	22123922	yt036	-	^{02 Ala tRNA}
1658740	1658812	-	73	22123922	yt037	-	^{02 Ala tRNA}
1661444	1661516	+	73	22123922	yt038	-	^{13 Val tRNA}
1661556	1661628	+	73	22123922	yt039	-	^{13 Val tRNA}
1661676	1661748	+	73	22123922	yt040	-	^{13 Val tRNA}
1661951	1662023	+	73	22123922	yt041	-	^{10 Lys tRNA}
1733801	1733872	+	72	22123922	yt042	-	^{11 Arg tRNA}
2145274	2145347	-	74	22123922	yt043	-	^{13 Val tRNA}
2145410	2145483	-	74	22123922	yt044	-	^{13 Val tRNA}
2379356	2379437	+	82	22123922	yt045	-	^{18 Tyr tRNA}
2512097	2512183	+	87	22123922	yt046	-	^{08 Ser tRNA}
2520506	2520592	+	87	22123922	yt047	-	^{08 Ser tRNA}
2645436	2645508	+	73	22123922	yt048	-	^{07 Asn tRNA}
2701503	2701585	-	83	22123922	yt049	-	^{15 Leu tRNA}
2701599	2701669	-	71	22123922	yt050	-	^{19 Cys tRNA}
2701725	2701797	-	73	22123922	yt051	-	^{01 Gly tRNA}
2708249	2708321	-	73	22123922	yt052	-	^{10 Lys tRNA}
2837679	2837751	+	73	22123922	yt053	-	^{07 Asn tRNA}
2851956	2852028	+	73	22123922	yt054	-	^{07 Asn tRNA}
3007878	3007962	-	85	22123922	yt055	-	^{08 Ser tRNA}
3231057	3231130	+	74	22123922	yt056	-	^{03 Pro tRNA}
3263205	3263277	-	73	22123922	yt057	-	^{12 Thr tRNA}
3263286	3263370	-	85	22123922	yt058	-	^{08 Ser tRNA}
3361500	3361569	-	70	22123922	yt059	-	Xaa tRNA
3361603	3361675	-	73	22123922	yt060	-	^{10 Lys tRNA}
3361706	3361778	-	73	22123922	yt061	-	^{10 Lys tRNA}
3388875	3389238	+	364	22123922	ys002	-	10Sa RNA (tmRNA)
3404626	3404699	-	74	22123922	yt062	-	^{06 Asp tRNA}
3411993	3412066	-	74	22123922	yt063	-	^{06 Asp tRNA}
3412190	3412309	-	120	22123922	yr018	-	5S ribosomal RNA
3412417	3415323	-	2907	22123922	yr019	-	23S ribosomal RNA
3415579	3415651	-	73	22123922	yt064	-	^{04 Glu tRNA}
3415745	3417329	-	1585	22123922	yr020	-	16S ribosomal RNA
3471666	3471739	+	74	22123922	yt065	-	^{16 Met tRNA}
3471866	3471939	+	74	22123922	yt066	-	^{16 Met tRNA}
3601512	3601582	-	71	22123922	yt067	-	^{01 Gly tRNA}
3632001	3632183	+	183	22123922	yr021	-	6S RNA
3692004	3692076	+	73	22123922	yt068	-	^{17 Phe tRNA}
3923482	3923555	+	74	22123922	yt069	-	^{16 Met tRNA}
4173142	4173225	+	84	22123922	yt070	-	^{15 Leu tRNA}
4232828	4232934	-	107	22123922	ys003	-	spot 42 RNA, inhibition of DNA synthesis
4241418	4241537	-	120	22123922	yr022	-	5S ribosomal RNA
4241645	4244551	-	2907	22123922	yr023	-	23S ribosomal RNA
4244807	4244879	-	73	22123922	yt071	-	^{04 Glu tRNA}
4244973	4246557	-	1585	22123922	yr024	-	16S ribosomal RNA
4251363	4251436	+	74	22123922	yt072	-	^{03 Pro tRNA}
4494759	4494849	-	91	22123922	yt073	-	Sec tRNA