Материалы:NC 004129

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_004129            7074893 bp    DNA     circular BCT 13-SEP-2007
   DEFINITION  Pseudomonas fluorescens Pf-5, complete genome.
   ACCESSION   NC_004129
   VERSION     NC_004129.6  GI:70728250
   KEYWORDS    .
   SOURCE      Pseudomonas fluorescens Pf-5
     ORGANISM  Pseudomonas fluorescens Pf-5
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Pseudomonadaceae; Pseudomonas.
   REFERENCE   1  (bases 1 to 7074893)
     AUTHORS   Gross,H., Stockwell,V.O., Henkels,M.D., Nowak-Thompson,B.,
               Loper,J.E. and Gerwick,W.H.
     TITLE     The Genomisotopic Approach: A Systematic Method to Isolate Products
               of Orphan Biosynthetic Gene Clusters
     JOURNAL   Chem. Biol. 14 (1), 53-63 (2007)
      PUBMED   17254952
   REFERENCE   2  (bases 1 to 7074893)
     AUTHORS   Paulsen,I.T., Press,C.M., Ravel,J., Kobayashi,D.Y., Myers,G.S.,
               Mavrodi,D.V., DeBoy,R.T., Seshadri,R., Ren,Q., Madupu,R.,
               Dodson,R.J., Durkin,A.S., Brinkac,L.M., Daugherty,S.C.,
               Sullivan,S.A., Rosovitz,M.J., Gwinn,M.L., Zhou,L., Schneider,D.J.,
               Cartinhour,S.W., Nelson,W.C., Weidman,J., Watkins,K., Tran,K.,
               Khouri,H., Pierson,E.A., Pierson,L.S., Thomashow,L.S. and
               Loper,J.E.
     TITLE     Complete genome sequence of the plant commensal Pseudomonas
               fluorescens Pf-5
     JOURNAL   Nature Biotech 23 (7), 873-878 (2005)
      PUBMED   15980861
     REMARK    Erratum:[Nat Biotechnol. 2006 Apr;24(4):466]
   REFERENCE   3  (bases 1 to 7074893)
     AUTHORS   Anderson,W.J., Hall,B.M., Roessler,C.G., Roberts,S.A., Ingram,W.M.,
               Weichel,A., Heroux,A., Montfort,W.R. and Cordes,M.H.
     TITLE     Discovery of similar natural protein sequences with different folds
               using transitive homology relationships
     JOURNAL   Unpublished
   REFERENCE   4  (bases 1 to 7074893)
     AUTHORS   Paulsen,I.T., Press,C., Ravel,J., Kobayashi,D., Myers,G.S.,
               Mavrodi,D., DeBoy,R.T., Seshadri,R., Ren,Q., Madupu,R.,
               Dodson,R.J., Durkin,S., Brinkac,L.M., Daugherty,S.C.,
               Sullivan,S.A., Rosovitz,M., Gwinn,M.L., Zhou,L., Nelson,W.C.,
               Weidman,J., Watkins,K., Tran,K., Khouri,H.M., Pierson,E.,
               Pierson,L.III, Thomashow,L. and Loper,J.
     TITLE     Direct Submission
     JOURNAL   Submitted (13-MAY-2005) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   REFERENCE   5  (bases 1 to 7074893)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (30-AUG-2002) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000076.
               On Jul 12, 2005 this sequence version replaced gi:41584502.
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
122811	124349	+	1539	70728250	PFL_0119	-	16S ribosomal RNA
124473	124549	+	77	70728250	PFL_0120	-	^{14 Ile tRNA}
124560	124635	+	76	70728250	PFL_0121	-	^{02 Ala tRNA}
124869	127769	+	2901	70728250	PFL_0122	-	23S ribosomal RNA
127896	128023	+	128	70728250	PFL_r01	-	5S ribosomal RNA
128126	128244	+	119	70728250	PFL_0123	-	5S ribosomal RNA
215506	215582	-	77	70728250	PFL_0178	-	^{11 Arg tRNA}
374422	374497	-	76	70728250	PFL_0324	-	^{12 Thr tRNA}
408994	409069	-	76	70728250	PFL_0356	-	^{17 Phe tRNA}
670787	670873	-	87	70728250	PFL_0575	-	^{15 Leu tRNA}
671039	671125	-	87	70728250	PFL_0576	-	^{15 Leu tRNA}
854052	855590	+	1539	70728250	PFL_0735	-	16S ribosomal RNA
855714	855790	+	77	70728250	PFL_0736	-	^{14 Ile tRNA}
855801	855876	+	76	70728250	PFL_0737	-	^{02 Ala tRNA}
856110	859010	+	2901	70728250	PFL_0738	-	23S ribosomal RNA
859138	859257	+	120	70728250	PFL_0739	-	5S ribosomal RNA
938293	938686	-	394	70728250	PFL_0811	-	sRNA
970963	971048	+	86	70728250	PFL_0840	-	^{15 Leu tRNA}
971145	971221	+	77	70728250	PFL_0841	-	^{16 Met tRNA}
980179	980254	+	76	70728250	PFL_0849	-	^{12 Thr tRNA}
1424493	1424569	-	77	70728250	PFL_1252	-	^{16 Met tRNA}
1424772	1424848	-	77	70728250	PFL_1253	-	^{16 Met tRNA}
1608375	1608448	-	74	70728250	PFL_1428	-	^{01 Gly tRNA}
1640063	1640152	+	90	70728250	PFL_1461	-	^{08 Ser tRNA}
1966832	1966907	+	76	70728250	PFL_1759	-	^{04 Glu tRNA}
1966910	1966985	+	76	70728250	PFL_1760	-	^{01 Gly tRNA}
1967091	1967166	+	76	70728250	PFL_1761	-	^{04 Glu tRNA}
1967170	1967245	+	76	70728250	PFL_1762	-	^{01 Gly tRNA}
1967350	1967425	+	76	70728250	PFL_1763	-	^{04 Glu tRNA}
1967429	1967504	+	76	70728250	PFL_1764	-	^{01 Gly tRNA}
2042089	2042178	+	90	70728250	PFL_1841	-	^{08 Ser tRNA}
2270242	2270317	-	76	70728250	PFL_2042	-	^{07 Asn tRNA}
2279398	2279473	+	76	70728250	PFL_2050	-	^{02 Ala tRNA}
2279553	2279628	+	76	70728250	PFL_2051	-	^{04 Glu tRNA}
2279681	2279756	+	76	70728250	PFL_2052	-	^{02 Ala tRNA}
2279836	2279911	+	76	70728250	PFL_2053	-	^{04 Glu tRNA}
2279964	2280039	+	76	70728250	PFL_2054	-	^{02 Ala tRNA}
2280118	2280193	+	76	70728250	PFL_2055	-	^{04 Glu tRNA}
2307592	2307667	+	76	70728250	PFL_2080	-	^{13 Val tRNA}
2307727	2307803	+	77	70728250	PFL_2081	-	^{06 Asp tRNA}
2307906	2307982	+	77	70728250	PFL_2082	-	^{06 Asp tRNA}
2309663	2309739	+	77	70728250	PFL_2084	-	^{13 Val tRNA}
2338296	2338372	+	77	70728250	PFL_2119	-	^{03 Pro tRNA}
3070553	3070627	-	75	70728250	PFL_2765	-	^{05 Gln tRNA}
3944175	3944261	-	87	70728250	PFL_3425	-	^{15 Leu tRNA}
3982048	3982121	-	74	70728250	PFL_3465	-	^{19 Cys tRNA}
4107954	4108029	-	76	70728250	PFL_3560	-	^{01 Gly tRNA}
4338335	4338422	+	88	70728250	PFL_3739	-	^{08 Ser tRNA}
4608208	4608292	-	85	70728250	PFL_3989	-	^{15 Leu tRNA}
4608350	4608425	-	76	70728250	PFL_3990	-	^{09 His tRNA}
4608458	4608534	-	77	70728250	PFL_3991	-	^{11 Arg tRNA}
4809976	4810095	-	120	70728250	PFL_4141	-	5S ribosomal RNA
4810223	4813123	-	2901	70728250	PFL_4142	-	23S ribosomal RNA
4813357	4813432	-	76	70728250	PFL_4143	-	^{02 Ala tRNA}
4813443	4813519	-	77	70728250	PFL_4144	-	^{14 Ile tRNA}
4813643	4815181	-	1539	70728250	PFL_4145	-	16S ribosomal RNA
5112634	5112710	-	77	70728250	PFL_4402	-	^{06 Asp tRNA}
5112730	5112805	-	76	70728250	PFL_4403	-	^{13 Val tRNA}
5112993	5113069	-	77	70728250	PFL_4404	-	^{06 Asp tRNA}
5113089	5113164	-	76	70728250	PFL_4405	-	^{13 Val tRNA}
5209370	5209446	-	77	70728250	PFL_4495	-	^{11 Arg tRNA}
5213418	5213494	-	77	70728250	PFL_4501	-	^{11 Arg tRNA}
5213567	5213643	-	77	70728250	PFL_4502	-	^{11 Arg tRNA}
5213751	5213841	-	91	70728250	PFL_4503	-	^{08 Ser tRNA}
5378468	5378541	-	74	70728250	PFL_4658	-	Xaa tRNA
5493511	5493586	-	76	70728250	PFL_4753	-	^{10 Lys tRNA}
5728407	5728491	+	85	70728250	PFL_4976	-	^{15 Leu tRNA}
5924323	5924397	+	75	70728250	PFL_5164	-	^{05 Gln tRNA}
5940615	5940691	+	77	70728250	PFL_5179	-	^{16 Met tRNA}
6008928	6009047	-	120	70728250	PFL_5245	-	5S ribosomal RNA
6009175	6012075	-	2901	70728250	PFL_5246	-	23S ribosomal RNA
6012309	6012384	-	76	70728250	PFL_5247	-	^{02 Ala tRNA}
6012395	6012471	-	77	70728250	PFL_5248	-	^{14 Ile tRNA}
6012595	6014133	-	1539	70728250	PFL_5249	-	16S ribosomal RNA
6068097	6068173	-	77	70728250	PFL_5300	-	^{03 Pro tRNA}
6068269	6068344	-	76	70728250	PFL_5301	-	^{10 Lys tRNA}
6068350	6068426	-	77	70728250	PFL_5302	-	^{03 Pro tRNA}
6068436	6068511	-	76	70728250	PFL_5303	-	^{07 Asn tRNA}
6379174	6379249	-	76	70728250	PFL_5596	-	^{20 Trp tRNA}
6380582	6380657	-	76	70728250	PFL_5598	-	^{12 Thr tRNA}
6380684	6380757	-	74	70728250	PFL_5599	-	^{01 Gly tRNA}
6380782	6380866	-	85	70728250	PFL_5600	-	^{18 Tyr tRNA}
6382748	6382867	-	120	70728250	PFL_5602	-	5S ribosomal RNA
6382995	6385895	-	2901	70728250	PFL_5603	-	23S ribosomal RNA
6386129	6386204	-	76	70728250	PFL_5604	-	^{02 Ala tRNA}
6386215	6386291	-	77	70728250	PFL_5605	-	^{14 Ile tRNA}
6386415	6387953	-	1539	70728250	PFL_5606	-	16S ribosomal RNA
6455714	6455790	+	77	70728250	PFL_5665	-	^{16 Met tRNA}