Материалы:NC 004337

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_004337            4607203 bp    DNA     circular BCT 14-SEP-2007
   DEFINITION  Shigella flexneri 2a str. 301, complete genome.
   ACCESSION   NC_004337
   VERSION     NC_004337.1  GI:24111450
   KEYWORDS    .
   SOURCE      Shigella flexneri 2a str. 301
     ORGANISM  Shigella flexneri 2a str. 301
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Shigella.
   REFERENCE   1  (bases 1 to 4607203)
     AUTHORS   Jin,Q., Yuan,Z., Xu,J., Wang,Y., Shen,Y., Lu,W., Wang,J., Liu,H.,
               Yang,J., Yang,F., Zhang,X., Zhang,J., Yang,G., Wu,H., Qu,D.,
               Dong,J., Sun,L., Xue,Y., Zhao,A., Gao,Y., Zhu,J., Kan,B., Ding,K.,
               Chen,S., Cheng,H., Yao,Z., He,B., Chen,R., Ma,D., Qiang,B., Wen,Y.,
               Hou,Y. and Yu,J.
     TITLE     Genome sequence of Shigella flexneri 2a: insights into
               pathogenicity through comparison with genomes of Escherichia coli
               K12 and O157
     JOURNAL   Nucleic Acids Res. 30 (20), 4432-4441 (2002)
      PUBMED   12384590
   REFERENCE   2  (bases 1 to 4607203)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (18-OCT-2002) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4607203)
     AUTHORS   Jin,Q., Shen,Y., Wang,J.H., Liu,H., Yang,J., Yang,F., Zhang,X.B.,
               Zhang,J.Y., Yang,G.W., Wu,H.T., Dong,J., Sun,L.L., Xue,Y.,
               Zhao,A.L., Gao,Y.S., Zhu,J.P., Chen,S.X., Yao,Z.J., Wang,Y.,
               Lu,W.C., Qiang,B.Q., Wen,Y.M. and Hou,Y.D.
     TITLE     Direct Submission
     JOURNAL   Submitted (21-MAY-2001) State Key Laboratory for Moleclular
               Virology and Genetic Engineering, Microbial Genome Center of
               Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA,
               Beijing 100176, P.R.China
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE005674.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
214669	216209	+	1541	24111450	SF4435	-	16S ribosomal RNA
216278	216354	+	77	24111450	SF4436	-	^{14 Ile tRNA}
216397	216472	+	76	24111450	SF4437	-	^{02 Ala tRNA}
216745	216820	+	76	24111450	SF4438	-	^{04 Glu tRNA}
217014	219917	+	2904	24111450	SF4439	-	23S ribosomal RNA
220012	220130	+	119	24111450	SF4440	-	5S ribosomal RNA
220183	220259	+	77	24111450	SF4441	-	^{06 Asp tRNA}
229833	229909	+	77	24111450	SF4442	-	^{06 Asp tRNA}
311201	311276	+	76	24111450	SF4443	-	^{12 Thr tRNA}
412979	413092	+	114	24111450	SF4554	-	4.5S RNA; component of ribonucleoprotein particle
479933	480009	+	77	24111450	SF4444	-	^{11 Arg tRNA}
576337	576412	-	76	24111450	SF4445	-	^{10 Lys tRNA}
576416	576491	-	76	24111450	SF4446	-	^{13 Val tRNA}
576627	576702	-	76	24111450	SF4447	-	^{10 Lys tRNA}
654586	654662	+	77	24111450	SF4448	-	^{16 Met tRNA}
654672	654756	+	85	24111450	SF4449	-	^{15 Leu tRNA}
654780	654854	+	75	24111450	SF4450	-	^{05 Gln tRNA}
654889	654963	+	75	24111450	SF4451	-	^{05 Gln tRNA}
654979	655055	+	77	24111450	SF4452	-	^{16 Met tRNA}
655103	655177	+	75	24111450	SF4453	-	^{05 Gln tRNA}
655215	655289	+	75	24111450	SF4454	-	^{05 Gln tRNA}
711827	711903	+	77	24111450	SF4455	-	^{16 Met tRNA}
711905	711981	+	77	24111450	SF4456	-	^{11 Arg tRNA}
711984	712058	+	75	24111450	SF4457	-	^{12 Thr tRNA}
712062	712136	+	75	24111450	SF4458	-	^{01 Gly tRNA}
720865	720941	+	77	24111450	SF4459	-	^{16 Met tRNA}
720943	721019	+	77	24111450	SF4460	-	^{11 Arg tRNA}
721022	721097	+	76	24111450	SF4461	-	^{12 Thr tRNA}
721101	721175	+	75	24111450	SF4462	-	^{01 Gly tRNA}
877256	877343	-	88	24111450	SF4463	-	^{08 Ser tRNA}
1019548	1019635	-	88	24111450	SF4464	-	^{08 Ser tRNA}
1072445	1072532	-	88	24111450	SF4465	-	^{08 Ser tRNA}
1282577	1282661	-	85	24111450	SF4466	-	^{18 Tyr tRNA}
1578004	1578080	-	77	24111450	SF4467	-	^{11 Arg tRNA}
1578182	1578257	-	76	24111450	SF4468	-	^{16 Met tRNA}
1727499	1727575	+	77	24111450	SF4469	-	^{13 Val tRNA}
1936890	1936964	-	75	24111450	SF4470	-	^{01 Gly tRNA}
1936968	1937043	-	76	24111450	SF4471	-	^{12 Thr tRNA}
1937046	1937122	-	77	24111450	SF4472	-	^{11 Arg tRNA}
1937124	1937199	-	76	24111450	SF4473	-	^{16 Met tRNA}
1988098	1988184	-	87	24111450	SF4474	-	^{15 Leu tRNA}
1988197	1988270	-	74	24111450	SF4475	-	^{19 Cys tRNA}
1988325	1988400	-	76	24111450	SF4476	-	^{01 Gly tRNA}
2025094	2025180	-	87	24111450	SF4555	-	anti-sense RNA silencer of rcsA gene
2060922	2060996	-	75	24111450	SF4477	-	^{01 Gly tRNA}
2061000	2061075	-	76	24111450	SF4478	-	^{12 Thr tRNA}
2061078	2061154	-	77	24111450	SF4479	-	^{10 Lys tRNA}
2061156	2061231	-	76	24111450	SF4480	-	^{16 Met tRNA}
2066450	2066539	-	90	24111450	SF4481	-	^{08 Ser tRNA}
2067531	2067606	+	76	24111450	SF4482	-	^{07 Asn tRNA}
2075382	2075457	-	76	24111450	SF4483	-	^{07 Asn tRNA}
2077190	2077265	+	76	24111450	SF4484	-	^{07 Asn tRNA}
2079600	2079676	+	77	24111450	SF4485	-	Xaa tRNA
2309415	2309492	+	78	24111450	SF4486	-	^{03 Pro tRNA}
2334488	2334579	+	92	24111450	SF4556	-	MicF RNA; inhibitor of OpmF
2476607	2476681	+	75	24111450	SF4487	-	^{11 Arg tRNA}
2519453	2519528	-	76	24111450	SF4488	-	^{02 Ala tRNA}
2519568	2519643	-	76	24111450	SF4489	-	^{02 Ala tRNA}
2522349	2522424	+	76	24111450	SF4490	-	^{13 Val tRNA}
2522468	2522543	+	76	24111450	SF4491	-	^{13 Val tRNA}
2522548	2522623	+	76	24111450	SF4492	-	^{10 Lys tRNA}
2723111	2723229	-	119	24111450	SF4493	-	5S ribosomal RNA
2723324	2726227	-	2904	24111450	SF4494	-	23S ribosomal RNA
2726411	2726486	-	76	24111450	SF4495	-	^{02 Ala tRNA}
2726529	2726605	-	77	24111450	SF4496	-	^{14 Ile tRNA}
2726674	2728214	-	1541	24111450	SF4497	-	16S ribosomal RNA
2754038	2754493	+	456	24111450	SF4557	-	10Sa RNA (tmRNA); tags incomplete translation products for degradation
2758367	2758442	-	76	24111450	SF4498	-	^{16 Met tRNA}
2791550	2791626	-	77	24111450	SF4499	-	^{11 Arg tRNA}
2791691	2791767	-	77	24111450	SF4500	-	^{11 Arg tRNA}
2791832	2791908	-	77	24111450	SF4501	-	^{11 Arg tRNA}
2791973	2792049	-	77	24111450	SF4502	-	^{11 Arg tRNA}
2792053	2792145	-	93	24111450	SF4503	-	^{08 Ser tRNA}
2883156	2883524	-	369	24111450	SF4558	-	CsrB RNA; inhibitor of CsrA
2903131	2903243	+	113	24111450	SF4559	-	gcvB RNA; regulator
2907821	2907897	+	77	24111450	SF4504	-	^{16 Met tRNA}
2907931	2908007	+	77	24111450	SF4505	-	^{16 Met tRNA}
2957652	2957725	-	74	24111450	SF4506	-	^{01 Gly tRNA}
2989897	2990080	+	184	24111450	SF4560	-	6S RNA
3052464	3052539	+	76	24111450	SF4507	-	^{17 Phe tRNA}
3206073	3206148	+	76	24111450	SF4508	-	^{16 Met tRNA}
3261710	3262086	-	377	24111450	SF4561	-	RNase P, RNA component; M1 RNA; processes tRNA, 4.5S RNA
3310396	3310472	-	77	24111450	SF4509	-	^{16 Met tRNA}
3314256	3314342	-	87	24111450	SF4510	-	^{15 Leu tRNA}
3406299	3406417	-	119	24111450	SF4511	-	5S ribosomal RNA
3406456	3406531	-	76	24111450	SF4512	-	^{12 Thr tRNA}
3406544	3406662	-	119	24111450	SF4513	-	5S ribosomal RNA
3406757	3409660	-	2904	24111450	SF4514	-	23S ribosomal RNA
3409854	3409929	-	76	24111450	SF4515	-	^{04 Glu tRNA}
3410015	3411556	-	1542	24111450	SF4516	-	16S ribosomal RNA
3679680	3679756	-	77	24111450	SF4517	-	^{03 Pro tRNA}
3806404	3806494	+	91	24111450	SF4518	-	Sec tRNA
3951291	3952832	+	1542	24111450	SF4519	-	16S ribosomal RNA
3952918	3952993	+	76	24111450	SF4564	-	^{04 Glu tRNA}
3953187	3956090	+	2904	24111450	SF4521	-	23S ribosomal RNA
3956185	3956303	+	119	24111450	SF4522	-	5S ribosomal RNA
3956356	3956432	+	77	24111450	SF4523	-	^{06 Asp tRNA}
3956441	3956516	+	76	24111450	SF4524	-	^{20 Trp tRNA}
3990939	3991015	+	77	24111450	SF4525	-	^{11 Arg tRNA}
3991074	3991149	+	76	24111450	SF4526	-	^{09 His tRNA}
3991170	3991256	+	87	24111450	SF4527	-	^{15 Leu tRNA}
3991299	3991375	+	77	24111450	SF4528	-	^{03 Pro tRNA}
4048482	4050023	+	1542	24111450	SF4529	-	16S ribosomal RNA
4050109	4050184	+	76	24111450	SF4530	-	^{04 Glu tRNA}
4050378	4053281	+	2904	24111450	SF4531	-	23S ribosomal RNA
4053376	4053494	+	119	24111450	SF4532	-	5S ribosomal RNA
4062588	4062696	+	109	24111450	SF4562	-	spot 42 RNA, inhibition of DNA synthesis
4178307	4178416	-	110	24111450	SF4563	-	OxyS RNA; regulator
4186671	4188212	+	1542	24111450	SF4533	-	16S ribosomal RNA
4188298	4188373	+	76	24111450	SF4534	-	^{04 Glu tRNA}
4188567	4191470	+	2904	24111450	SF4535	-	23S ribosomal RNA
4191565	4191683	+	119	24111450	SF4536	-	5S ribosomal RNA
4195141	4195216	+	76	24111450	SF4537	-	^{12 Thr tRNA}
4195225	4195309	+	85	24111450	SF4538	-	^{18 Tyr tRNA}
4195426	4195500	+	75	24111450	SF4539	-	^{01 Gly tRNA}
4195507	4195582	+	76	24111450	SF4540	-	^{12 Thr tRNA}
4227109	4228650	+	1542	24111450	SF4541	-	16S ribosomal RNA
4228736	4228811	+	76	24111450	SF4542	-	^{04 Glu tRNA}
4229005	4231908	+	2904	24111450	SF4543	-	23S ribosomal RNA
4232003	4232121	+	119	24111450	SF4544	-	5S ribosomal RNA
4396148	4396232	-	85	24111450	SF4545	-	^{15 Leu tRNA}
4466171	4466246	-	76	24111450	SF4546	-	^{17 Phe tRNA}
4496947	4497022	+	76	24111450	SF4547	-	^{01 Gly tRNA}
4497180	4497255	+	76	24111450	SF4548	-	^{01 Gly tRNA}
4497291	4497366	+	76	24111450	SF4549	-	^{01 Gly tRNA}
4497402	4497477	+	76	24111450	SF4550	-	^{01 Gly tRNA}
4572939	4573025	-	87	24111450	SF4551	-	^{15 Leu tRNA}
4573061	4573149	-	89	24111450	SF4552	-	^{15 Leu tRNA}
4573178	4573264	-	87	24111450	SF4553	-	^{15 Leu tRNA}